RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.92■□□□□ 0.46
PCDHGA3-202ENST00000612467 VAMP4O75379 141 aa17.92■□□□□ 0.46
PCDHGA3-202ENST00000612467 C8orf58Q8NAV2 365 aa17.92■□□□□ 0.46
PCDHGA3-202ENST00000612467 DDX19BQ9UMR2 479 aa17.91■□□□□ 0.46
PCDHGA3-202ENST00000612467 HSP90AB2PQ58FF8 381 aa17.91■□□□□ 0.46
PCDHGA3-202ENST00000612467 VIRMAQ69YN4 1812 aaKnown RBP17.9■□□□□ 0.46
PCDHGA3-202ENST00000612467 SULT6B1Q6IMI4 303 aa17.9■□□□□ 0.46
PCDHGA3-202ENST00000612467 PTPRUQ92729 1446 aa17.9■□□□□ 0.46
PCDHGA3-202ENST00000612467 EIF4A2Q14240 407 aaKnown RBP17.9■□□□□ 0.46
PCDHGA3-202ENST00000612467 ZBTB40Q9NUA8 1239 aa17.9■□□□□ 0.46
PCDHGA3-202ENST00000612467 TTC21BQ7Z4L5 1316 aa17.89■□□□□ 0.45
PCDHGA3-202ENST00000612467 HDGFP51858 240 aaKnown RBP17.89■□□□□ 0.45
PCDHGA3-202ENST00000612467 NFKBIBQ15653 356 aa17.89■□□□□ 0.45
PCDHGA3-202ENST00000612467 DLG5Q8TDM6 1919 aa17.89■□□□□ 0.45
PCDHGA3-202ENST00000612467 MON2Q7Z3U7 1717 aa17.89■□□□□ 0.45
PCDHGA3-202ENST00000612467 CDK12Q9NYV4 1490 aaPredicted RBP17.88■□□□□ 0.45
PCDHGA3-202ENST00000612467 TECPR2O15040 1411 aa17.88■□□□□ 0.45
PCDHGA3-202ENST00000612467 KIF16BQ96L93 1317 aa17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 MCM10Q7L590 875 aa17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 MRPL50Q8N5N7 158 aaKnown RBP17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 LNPKQ9C0E8 428 aa17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 AMOTL2Q9Y2J4 779 aa17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 C3P01024 1663 aa17.87■□□□□ 0.45
PCDHGA3-202ENST00000612467 ITSN1Q15811 1721 aa17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 TWISTNBQ3B726 338 aaPredicted RBP17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 NUTM2GQ5VZR2 741 aa17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 SLKQ9H2G2 1235 aaPredicted RBP17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 AATKQ6ZMQ8 1374 aa17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 AKAP12Q02952 1782 aa17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 KNDC1Q76NI1 1749 aa17.86■□□□□ 0.45
PCDHGA3-202ENST00000612467 AAMPQ13685 434 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 IPO8O15397 1037 aaKnown RBP17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 ZNF853P0CG23 659 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 ALDH1L2Q3SY69 923 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 SPRYD3Q8NCJ5 442 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 RBM33Q96EV2 1170 aaKnown RBP17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 MIS18AQ9NYP9 233 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 GNAI1P63096 354 aa17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 HDAC1Q13547 482 aaPredicted RBP17.85■□□□□ 0.45
PCDHGA3-202ENST00000612467 FOXO3O43524 673 aa17.84■□□□□ 0.45
PCDHGA3-202ENST00000612467 FRAT2O75474 233 aaPredicted RBP17.84■□□□□ 0.45
PCDHGA3-202ENST00000612467 MFAP1P55081 439 aaKnown RBP17.84■□□□□ 0.45
PCDHGA3-202ENST00000612467 ZNF692Q9BU19 519 aaPredicted RBP17.84■□□□□ 0.45
PCDHGA3-202ENST00000612467 IFT57Q9NWB7 429 aa17.84■□□□□ 0.45
PCDHGA3-202ENST00000612467 SIRT1Q96EB6 747 aa17.83■□□□□ 0.45
PCDHGA3-202ENST00000612467 SMC5Q8IY18 1101 aa17.82■□□□□ 0.44
PCDHGA3-202ENST00000612467 CFAP44Q96MT7 982 aa17.82■□□□□ 0.44
PCDHGA3-202ENST00000612467 ZBTB7BO15156 539 aaPredicted RBP17.82■□□□□ 0.44
PCDHGA3-202ENST00000612467 PLEKHG1Q9ULL1 1385 aa17.81■□□□□ 0.44
PCDHGA3-202ENST00000612467 PEAK1Q9H792 1746 aa17.81■□□□□ 0.44
PCDHGA3-202ENST00000612467 USP6P35125 1406 aa17.8■□□□□ 0.44
PCDHGA3-202ENST00000612467 TBC1D32Q96NH3 1257 aa17.8■□□□□ 0.44
PCDHGA3-202ENST00000612467 EID1Q9Y6B2 187 aa17.8■□□□□ 0.44
PCDHGA3-202ENST00000612467 SIRT2Q8IXJ6 389 aa17.8■□□□□ 0.44
PCDHGA3-202ENST00000612467 RGPD8O14715 1765 aaPredicted RBP17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 NGDNQ8NEJ9 315 aaKnown RBP17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 MAP3K19Q56UN5 1328 aa17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 OVOS2A0A0J9YW53 1432 aa17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 OVOS2Q6IE36 1432 aa17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 RIMS1Q86UR5 1692 aaKnown RBP17.79■□□□□ 0.44
PCDHGA3-202ENST00000612467 PLEKHG3A1L390 1219 aa17.78■□□□□ 0.44
PCDHGA3-202ENST00000612467 ANKRD45Q5TZF3 282 aa17.78■□□□□ 0.44
PCDHGA3-202ENST00000612467 NRKQ7Z2Y5 1582 aa17.77■□□□□ 0.44
PCDHGA3-202ENST00000612467 PLEKHG5O94827 1062 aa17.77■□□□□ 0.44
PCDHGA3-202ENST00000612467 CALD1Q05682 793 aaKnown RBP17.77■□□□□ 0.44
PCDHGA3-202ENST00000612467 NUCB1Q02818 461 aa17.77■□□□□ 0.43
PCDHGA3-202ENST00000612467 TBC1D2Q9BYX2 928 aa17.77■□□□□ 0.43
PCDHGA3-202ENST00000612467 UPF2Q9HAU5 1272 aaKnown RBP17.77■□□□□ 0.43
PCDHGA3-202ENST00000612467 CHD1LQ86WJ1 897 aa17.76■□□□□ 0.43
PCDHGA3-202ENST00000612467 USP35Q9P2H5 1018 aa17.76■□□□□ 0.43
PCDHGA3-202ENST00000612467 KCNA6P17658 529 aa17.75■□□□□ 0.43
PCDHGA3-202ENST00000612467 TOPAZ1Q8N9V7 1692 aa17.75■□□□□ 0.43
PCDHGA3-202ENST00000612467 LMOD3Q0VAK6 560 aa17.75■□□□□ 0.43
PCDHGA3-202ENST00000612467 PTCH1Q13635 1447 aa17.75■□□□□ 0.43
PCDHGA3-202ENST00000612467 ABCC4O15439 1325 aa17.74■□□□□ 0.43
PCDHGA3-202ENST00000612467 BRPF1P55201 1214 aaPredicted RBP17.74■□□□□ 0.43
PCDHGA3-202ENST00000612467 MTHFSDQ2M296 383 aaKnown RBP17.74■□□□□ 0.43
PCDHGA3-202ENST00000612467 LTV1Q96GA3 475 aaPredicted RBP17.74■□□□□ 0.43
PCDHGA3-202ENST00000612467 C22orf23Q9BZE7 217 aa17.73■□□□□ 0.43
PCDHGA3-202ENST00000612467 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
PCDHGA3-202ENST00000612467 ANO8Q9HCE9 1232 aaPredicted RBP17.72■□□□□ 0.43
PCDHGA3-202ENST00000612467 APBB1O00213 710 aa17.72■□□□□ 0.43
PCDHGA3-202ENST00000612467 AMPHP49418 695 aa17.72■□□□□ 0.43
PCDHGA3-202ENST00000612467 NLRP6P59044 892 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 C14orf37Q86TY3 774 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 ZNF428Q96B54 188 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 EYA1Q99502 592 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 SSH2Q76I76 1423 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 ARHGAP45Q92619 1136 aa17.71■□□□□ 0.43
PCDHGA3-202ENST00000612467 CHL1O00533 1208 aa17.71■□□□□ 0.42
PCDHGA3-202ENST00000612467 BECN1Q14457 450 aa17.71■□□□□ 0.42
PCDHGA3-202ENST00000612467 NECTIN2Q92692 538 aa17.71■□□□□ 0.42
PCDHGA3-202ENST00000612467 PIK3R4Q99570 1358 aa17.7■□□□□ 0.42
PCDHGA3-202ENST00000612467 TBX22Q9Y458 520 aa17.7■□□□□ 0.42
PCDHGA3-202ENST00000612467 G2E3Q7L622 706 aa17.7■□□□□ 0.42
PCDHGA3-202ENST00000612467 C16orf71Q8IYS4 520 aaPredicted RBP17.7■□□□□ 0.42
PCDHGA3-202ENST00000612467 USP31Q70CQ4 1352 aa17.69■□□□□ 0.42
PCDHGA3-202ENST00000612467 DIP2AQ14689 1571 aa17.69■□□□□ 0.42
PCDHGA3-202ENST00000612467 CEP170BQ9Y4F5 1589 aaPredicted RBP17.69■□□□□ 0.42
PCDHGA3-202ENST00000612467 USHBP1Q8N6Y0 703 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms