RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 COL5A2P05997 1499 aaPredicted RBP26.66■■□□□ 1.86
UPF1-212ENST00000601689 CGNL1Q0VF96 1302 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 NSD3Q9BZ95 1437 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 NFAT5O94916 1531 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 KIF20BQ96Q89 1820 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 FYB1O15117 783 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 TCP11L2Q8N4U5 519 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 ABCC6O95255 1503 aa26.65■■□□□ 1.86
UPF1-212ENST00000601689 LTN1O94822 1766 aa26.64■■□□□ 1.86
UPF1-212ENST00000601689 GGNBP2Q9H3C7 697 aa26.64■■□□□ 1.86
UPF1-212ENST00000601689 CRB1P82279 1406 aa26.63■■□□□ 1.85
UPF1-212ENST00000601689 BARGINQ6ZT62 677 aa26.62■■□□□ 1.85
UPF1-212ENST00000601689 KRT27Q7Z3Y8 459 aa26.62■■□□□ 1.85
UPF1-212ENST00000601689 COL18A1P39060 1754 aa26.61■■□□□ 1.85
UPF1-212ENST00000601689 AMPHP49418 695 aa26.61■■□□□ 1.85
UPF1-212ENST00000601689 CARD14Q9BXL6 1004 aa26.61■■□□□ 1.85
UPF1-212ENST00000601689 WDR17Q8IZU2 1322 aa26.61■■□□□ 1.85
UPF1-212ENST00000601689 RGPD5Q99666 1765 aa26.61■■□□□ 1.85
UPF1-212ENST00000601689 UPF1Q92900 1129 aaKnown RBP eCLIP26.6■■□□□ 1.85
UPF1-212ENST00000601689 PANK3Q9H999 370 aa26.6■■□□□ 1.85
UPF1-212ENST00000601689 AXIN2Q9Y2T1 843 aa26.6■■□□□ 1.85
UPF1-212ENST00000601689 BRWD3Q6RI45 1802 aa26.59■■□□□ 1.85
UPF1-212ENST00000601689 CCDC125Q86Z20 511 aa26.57■■□□□ 1.84
UPF1-212ENST00000601689 PDE3BQ13370 1112 aa26.56■■□□□ 1.84
UPF1-212ENST00000601689 IP6K1Q92551 441 aa26.56■■□□□ 1.84
UPF1-212ENST00000601689 CDCA7Q9BWT1 371 aaPredicted RBP26.56■■□□□ 1.84
UPF1-212ENST00000601689 KNSTRNQ9Y448 316 aa26.56■■□□□ 1.84
UPF1-212ENST00000601689 KIF7Q2M1P5 1343 aa26.56■■□□□ 1.84
UPF1-212ENST00000601689 BLMP54132 1417 aaPredicted RBP26.56■■□□□ 1.84
UPF1-212ENST00000601689 C11orf95C9JLR9 678 aaPredicted RBP26.55■■□□□ 1.84
UPF1-212ENST00000601689 SF3B2Q13435 895 aaKnown RBP26.54■■□□□ 1.84
UPF1-212ENST00000601689 CARD10Q9BWT7 1032 aa26.54■■□□□ 1.84
UPF1-212ENST00000601689 ANKRD24Q8TF21 1146 aa26.53■■□□□ 1.84
UPF1-212ENST00000601689 CCDC7Q96M83 1385 aa26.53■■□□□ 1.84
UPF1-212ENST00000601689 ERBB3P21860 1342 aa26.52■■□□□ 1.84
UPF1-212ENST00000601689 MAP3K19Q56UN5 1328 aa26.52■■□□□ 1.84
UPF1-212ENST00000601689 NLRP2Q9NX02 1062 aa26.52■■□□□ 1.84
UPF1-212ENST00000601689 THSD7AQ9UPZ6 1657 aa26.51■■□□□ 1.83
UPF1-212ENST00000601689 RTL1A6NKG5 1358 aa26.5■■□□□ 1.83
UPF1-212ENST00000601689 NSD2O96028 1365 aa26.49■■□□□ 1.83
UPF1-212ENST00000601689 HOXC9P31274 260 aa26.49■■□□□ 1.83
UPF1-212ENST00000601689 RRS1Q15050 365 aaKnown RBP26.49■■□□□ 1.83
UPF1-212ENST00000601689 SMG6Q86US8 1419 aaKnown RBP26.48■■□□□ 1.83
UPF1-212ENST00000601689 KIF24Q5T7B8 1368 aa26.48■■□□□ 1.83
UPF1-212ENST00000601689 LTV1Q96GA3 475 aaPredicted RBP26.48■■□□□ 1.83
UPF1-212ENST00000601689 DDB1Q16531 1140 aa26.47■■□□□ 1.83
UPF1-212ENST00000601689 ZEB1P37275 1124 aaPredicted RBP26.46■■□□□ 1.83
UPF1-212ENST00000601689 FAM196AQ6ZSG2 479 aa26.46■■□□□ 1.83
UPF1-212ENST00000601689 FAM208AQ9UK61 1670 aaKnown RBP26.46■■□□□ 1.83
UPF1-212ENST00000601689 ANKRD26Q9UPS8 1709 aa26.45■■□□□ 1.83
UPF1-212ENST00000601689 FBLN1P23142 703 aa26.45■■□□□ 1.82
UPF1-212ENST00000601689 PPM1GO15355 546 aaPredicted RBP26.44■■□□□ 1.82
UPF1-212ENST00000601689 PARP4Q9UKK3 1724 aaKnown RBP26.44■■□□□ 1.82
UPF1-212ENST00000601689 FLT4P35916 1363 aa26.44■■□□□ 1.82
UPF1-212ENST00000601689 MAP2P11137 1827 aaKnown RBP26.44■■□□□ 1.82
UPF1-212ENST00000601689 EXOC5O00471 708 aa26.43■■□□□ 1.82
UPF1-212ENST00000601689 MORC1Q86VD1 984 aa26.43■■□□□ 1.82
UPF1-212ENST00000601689 IL2RBP14784 551 aa26.41■■□□□ 1.82
UPF1-212ENST00000601689 WNK3Q9BYP7 1800 aa26.4■■□□□ 1.82
UPF1-212ENST00000601689 TNNT2P45379 298 aaPredicted RBP26.4■■□□□ 1.82
UPF1-212ENST00000601689 WASHC2AQ641Q2 1341 aa26.39■■□□□ 1.82
UPF1-212ENST00000601689 EP400Q96L91 3159 aa26.39■■□□□ 1.82
UPF1-212ENST00000601689 INSRP06213 1382 aa26.39■■□□□ 1.82
UPF1-212ENST00000601689 FAM182BQ5T319 152 aa26.37■■□□□ 1.81
UPF1-212ENST00000601689 BAG6P46379 1132 aa26.36■■□□□ 1.81
UPF1-212ENST00000601689 HSP90AB2PQ58FF8 381 aa26.36■■□□□ 1.81
UPF1-212ENST00000601689 EMILIN1Q9Y6C2 1016 aa26.36■■□□□ 1.81
UPF1-212ENST00000601689 OVOS2A0A0G2JMS6 1433 aa26.34■■□□□ 1.81
UPF1-212ENST00000601689 RGPD1P0DJD0 1748 aa26.34■■□□□ 1.81
UPF1-212ENST00000601689 LRRC37A3O60309 1634 aa26.33■■□□□ 1.81
UPF1-212ENST00000601689 POLKQ9UBT6 870 aa26.33■■□□□ 1.81
UPF1-212ENST00000601689 DISP2A7MBM2 1401 aa26.32■■□□□ 1.8
UPF1-212ENST00000601689 AMER1Q5JTC6 1135 aaPredicted RBP26.31■■□□□ 1.8
UPF1-212ENST00000601689 RAPGEF4Q8WZA2 1011 aa26.31■■□□□ 1.8
UPF1-212ENST00000601689 TRIM37O94972 964 aa26.3■■□□□ 1.8
UPF1-212ENST00000601689 PEAK1Q9H792 1746 aa26.29■■□□□ 1.8
UPF1-212ENST00000601689 PER1O15534 1290 aaPredicted RBP26.29■■□□□ 1.8
UPF1-212ENST00000601689 TNS2Q63HR2 1409 aa26.29■■□□□ 1.8
UPF1-212ENST00000601689 RGPD2P0DJD1 1756 aa26.28■■□□□ 1.8
UPF1-212ENST00000601689 CC2D1BQ5T0F9 858 aaKnown RBP26.28■■□□□ 1.8
UPF1-212ENST00000601689 NBPF6Q5VWK0 638 aa26.28■■□□□ 1.8
UPF1-212ENST00000601689 NBPF4Q96M43 638 aa26.28■■□□□ 1.8
UPF1-212ENST00000601689 TATP17735 454 aaPredicted RBP26.27■■□□□ 1.8
UPF1-212ENST00000601689 KAT6BQ8WYB5 2073 aa26.26■■□□□ 1.79
UPF1-212ENST00000601689 NPC1L1Q9UHC9 1359 aa26.25■■□□□ 1.79
UPF1-212ENST00000601689 APBA3O96018 575 aa26.25■■□□□ 1.79
UPF1-212ENST00000601689 MARCH10Q8NA82 808 aaPredicted RBP26.25■■□□□ 1.79
UPF1-212ENST00000601689 DEFB132Q7Z7B7 95 aa26.24■■□□□ 1.79
UPF1-212ENST00000601689 ZCRB1Q8TBF4 217 aaKnown RBP26.23■■□□□ 1.79
UPF1-212ENST00000601689 CNGB1Q14028 1251 aaPredicted RBP26.22■■□□□ 1.79
UPF1-212ENST00000601689 USHBP1Q8N6Y0 703 aa26.22■■□□□ 1.79
UPF1-212ENST00000601689 DDX54Q8TDD1 881 aaKnown RBP26.22■■□□□ 1.79
UPF1-212ENST00000601689 BCL9O00512 1426 aa26.21■■□□□ 1.79
UPF1-212ENST00000601689 EIF4A2Q14240 407 aaKnown RBP26.19■■□□□ 1.78
UPF1-212ENST00000601689 BCL11BQ9C0K0 894 aaPredicted RBP26.19■■□□□ 1.78
UPF1-212ENST00000601689 SBF2Q86WG5 1849 aa26.18■■□□□ 1.78
UPF1-212ENST00000601689 EN1Q05925 392 aaPredicted RBP26.18■■□□□ 1.78
UPF1-212ENST00000601689 TNS1Q9HBL0 1735 aaKnown RBP26.18■■□□□ 1.78
UPF1-212ENST00000601689 EYA1Q99502 592 aa26.17■■□□□ 1.78
UPF1-212ENST00000601689 PARD3Q8TEW0 1356 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms