RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ARHGEF25Q86VW2 580 aa26.51■■□□□ 1.83
PNKP-213ENST00000599543 WDR17Q8IZU2 1322 aa26.5■■□□□ 1.83
PNKP-213ENST00000599543 TMC1Q8TDI8 760 aa26.5■■□□□ 1.83
PNKP-213ENST00000599543 CD163L1Q9NR16 1453 aa26.49■■□□□ 1.83
PNKP-213ENST00000599543 APBA3O96018 575 aa26.49■■□□□ 1.83
PNKP-213ENST00000599543 EZH2Q15910 746 aaKnown RBP26.49■■□□□ 1.83
PNKP-213ENST00000599543 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.49■■□□□ 1.83
PNKP-213ENST00000599543 AXIN2Q9Y2T1 843 aa26.49■■□□□ 1.83
PNKP-213ENST00000599543 PARD3Q8TEW0 1356 aa26.48■■□□□ 1.83
PNKP-213ENST00000599543 ABCC6O95255 1503 aa26.48■■□□□ 1.83
PNKP-213ENST00000599543 HDGFL2Q7Z4V5 671 aaPredicted RBP26.47■■□□□ 1.83
PNKP-213ENST00000599543 RREB1Q92766 1687 aa26.47■■□□□ 1.83
PNKP-213ENST00000599543 OVOS2A0A0G2JMS6 1433 aa26.47■■□□□ 1.83
PNKP-213ENST00000599543 OVOS2A0A0J9YW53 1432 aa26.47■■□□□ 1.83
PNKP-213ENST00000599543 OVOS2Q6IE36 1432 aa26.47■■□□□ 1.83
PNKP-213ENST00000599543 LTN1O94822 1766 aa26.46■■□□□ 1.83
PNKP-213ENST00000599543 PEAK1Q9H792 1746 aa26.46■■□□□ 1.83
PNKP-213ENST00000599543 C11orf95C9JLR9 678 aaPredicted RBP26.46■■□□□ 1.83
PNKP-213ENST00000599543 CAMKK2Q96RR4 588 aa26.46■■□□□ 1.83
PNKP-213ENST00000599543 CSB-PGBD3P0DP91 1061 aa26.45■■□□□ 1.82
PNKP-213ENST00000599543 SBF2Q86WG5 1849 aa26.44■■□□□ 1.82
PNKP-213ENST00000599543 DDB1Q16531 1140 aa26.44■■□□□ 1.82
PNKP-213ENST00000599543 EDC4Q6P2E9 1401 aaKnown RBP26.44■■□□□ 1.82
PNKP-213ENST00000599543 USP31Q70CQ4 1352 aa26.44■■□□□ 1.82
PNKP-213ENST00000599543 NUP188Q5SRE5 1749 aa26.43■■□□□ 1.82
PNKP-213ENST00000599543 R3HDM1Q15032 1099 aaKnown RBP26.43■■□□□ 1.82
PNKP-213ENST00000599543 SLC12A5Q9H2X9 1139 aa26.43■■□□□ 1.82
PNKP-213ENST00000599543 TERF2IPQ9NYB0 399 aa26.43■■□□□ 1.82
PNKP-213ENST00000599543 NME9Q86XW9 330 aa26.42■■□□□ 1.82
PNKP-213ENST00000599543 PUS7Q96PZ0 661 aaKnown RBP26.42■■□□□ 1.82
PNKP-213ENST00000599543 CDCA7Q9BWT1 371 aaPredicted RBP26.42■■□□□ 1.82
PNKP-213ENST00000599543 A0A1W2PP64 1363 aa26.42■■□□□ 1.82
PNKP-213ENST00000599543 CARD10Q9BWT7 1032 aa26.4■■□□□ 1.82
PNKP-213ENST00000599543 NINLQ9Y2I6 1382 aa26.39■■□□□ 1.82
PNKP-213ENST00000599543 ST20-MTHFSA0A0A6YYL1 179 aa26.39■■□□□ 1.82
PNKP-213ENST00000599543 TESK2Q96S53 571 aa26.38■■□□□ 1.81
PNKP-213ENST00000599543 RGPD3A6NKT7 1758 aaPredicted RBP26.38■■□□□ 1.81
PNKP-213ENST00000599543 RGPD4Q7Z3J3 1758 aa26.38■■□□□ 1.81
PNKP-213ENST00000599543 CCDC7Q96M83 1385 aa26.37■■□□□ 1.81
PNKP-213ENST00000599543 SLC24A1O60721 1099 aa26.37■■□□□ 1.81
PNKP-213ENST00000599543 ERBB3P21860 1342 aa26.33■■□□□ 1.81
PNKP-213ENST00000599543 NBPF14Q5TI25 921 aa26.32■■□□□ 1.8
PNKP-213ENST00000599543 MARCH10Q8NA82 808 aaPredicted RBP26.31■■□□□ 1.8
PNKP-213ENST00000599543 BCL9O00512 1426 aa26.31■■□□□ 1.8
PNKP-213ENST00000599543 TNS2Q63HR2 1409 aa26.31■■□□□ 1.8
PNKP-213ENST00000599543 EXOC5O00471 708 aa26.3■■□□□ 1.8
PNKP-213ENST00000599543 USP47Q96K76 1375 aa26.3■■□□□ 1.8
PNKP-213ENST00000599543 CCER1Q8TC90 406 aaPredicted RBP26.29■■□□□ 1.8
PNKP-213ENST00000599543 BCL11BQ9C0K0 894 aaPredicted RBP26.29■■□□□ 1.8
PNKP-213ENST00000599543 NLRP2Q9NX02 1062 aa26.29■■□□□ 1.8
PNKP-213ENST00000599543 FAM208AQ9UK61 1670 aaKnown RBP26.27■■□□□ 1.8
PNKP-213ENST00000599543 PLSCR1O15162 318 aa26.26■■□□□ 1.79
PNKP-213ENST00000599543 ANKRD24Q8TF21 1146 aa26.26■■□□□ 1.79
PNKP-213ENST00000599543 ANKRD36BQ8N2N9 1353 aa26.25■■□□□ 1.79
PNKP-213ENST00000599543 TMF1P82094 1093 aa26.25■■□□□ 1.79
PNKP-213ENST00000599543 COG3Q96JB2 828 aa26.24■■□□□ 1.79
PNKP-213ENST00000599543 PTF1AQ7RTS3 328 aa26.23■■□□□ 1.79
PNKP-213ENST00000599543 NHSQ6T4R5 1651 aa26.22■■□□□ 1.79
PNKP-213ENST00000599543 IL2RBP14784 551 aa26.22■■□□□ 1.79
PNKP-213ENST00000599543 KAT6BQ8WYB5 2073 aa26.21■■□□□ 1.79
PNKP-213ENST00000599543 IP6K1Q92551 441 aa26.2■■□□□ 1.78
PNKP-213ENST00000599543 KIF20BQ96Q89 1820 aa26.18■■□□□ 1.78
PNKP-213ENST00000599543 CDCA8Q53HL2 280 aa26.18■■□□□ 1.78
PNKP-213ENST00000599543 LTV1Q96GA3 475 aaPredicted RBP26.17■■□□□ 1.78
PNKP-213ENST00000599543 MAP3K19Q56UN5 1328 aa26.16■■□□□ 1.78
PNKP-213ENST00000599543 TIMELESSQ9UNS1 1208 aa26.16■■□□□ 1.78
PNKP-213ENST00000599543 AMPHP49418 695 aa26.15■■□□□ 1.78
PNKP-213ENST00000599543 RGPD2P0DJD1 1756 aa26.15■■□□□ 1.78
PNKP-213ENST00000599543 ANO8Q9HCE9 1232 aaPredicted RBP26.14■■□□□ 1.78
PNKP-213ENST00000599543 BTAF1O14981 1849 aa26.14■■□□□ 1.77
PNKP-213ENST00000599543 CLSPNQ9HAW4 1339 aa26.14■■□□□ 1.77
PNKP-213ENST00000599543 MYOM1P52179 1685 aa26.13■■□□□ 1.77
PNKP-213ENST00000599543 KCNQ2O43526 872 aa26.13■■□□□ 1.77
PNKP-213ENST00000599543 HOXC9P31274 260 aa26.13■■□□□ 1.77
PNKP-213ENST00000599543 ACSBG1Q96GR2 724 aa26.13■■□□□ 1.77
PNKP-213ENST00000599543 RTL1A6NKG5 1358 aa26.12■■□□□ 1.77
PNKP-213ENST00000599543 PROM2Q8N271 834 aa26.12■■□□□ 1.77
PNKP-213ENST00000599543 CASZ1Q86V15 1759 aa26.12■■□□□ 1.77
PNKP-213ENST00000599543 FBLN1P23142 703 aa26.11■■□□□ 1.77
PNKP-213ENST00000599543 TXNRD1Q16881 649 aa26.11■■□□□ 1.77
PNKP-213ENST00000599543 GGNBP2Q9H3C7 697 aa26.11■■□□□ 1.77
PNKP-213ENST00000599543 SPON1Q9HCB6 807 aa26.11■■□□□ 1.77
PNKP-213ENST00000599543 FYB1O15117 783 aa26.1■■□□□ 1.77
PNKP-213ENST00000599543 PPP1R1BQ9UD71 204 aaPredicted RBP26.08■■□□□ 1.77
PNKP-213ENST00000599543 RRS1Q15050 365 aaKnown RBP26.07■■□□□ 1.76
PNKP-213ENST00000599543 SMG6Q86US8 1419 aaKnown RBP26.06■■□□□ 1.76
PNKP-213ENST00000599543 STK32BQ9NY57 414 aa26.06■■□□□ 1.76
PNKP-213ENST00000599543 DDX54Q8TDD1 881 aaKnown RBP26.05■■□□□ 1.76
PNKP-213ENST00000599543 SHANK3Q9BYB0 1731 aa26.05■■□□□ 1.76
PNKP-213ENST00000599543 DOT1LQ8TEK3 1739 aa26.03■■□□□ 1.76
PNKP-213ENST00000599543 NSD3Q9BZ95 1437 aa26.03■■□□□ 1.76
PNKP-213ENST00000599543 MEGF6O75095 1541 aa26.02■■□□□ 1.76
PNKP-213ENST00000599543 PAPPAQ13219 1627 aa26.01■■□□□ 1.75
PNKP-213ENST00000599543 SLC15A2Q16348 729 aa26.01■■□□□ 1.75
PNKP-213ENST00000599543 PDGFDQ9GZP0 370 aaPredicted RBP26■■□□□ 1.75
PNKP-213ENST00000599543 FLT4P35916 1363 aa25.99■■□□□ 1.75
PNKP-213ENST00000599543 KIF24Q5T7B8 1368 aa25.98■■□□□ 1.75
PNKP-213ENST00000599543 ZBTB7AO95365 584 aa25.98■■□□□ 1.75
PNKP-213ENST00000599543 NBPF6Q5VWK0 638 aa25.98■■□□□ 1.75
PNKP-213ENST00000599543 ZCRB1Q8TBF4 217 aaKnown RBP25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms