RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 HMOX1P09601 288 aa22.19■■□□□ 1.14
SHKBP1-216ENST00000598201 PNNQ9H307 717 aaKnown RBP22.19■■□□□ 1.14
SHKBP1-216ENST00000598201 TTC21AQ8NDW8 1320 aa22.18■■□□□ 1.14
SHKBP1-216ENST00000598201 RIPK4P57078 832 aa22.18■■□□□ 1.14
SHKBP1-216ENST00000598201 PHF8Q9UPP1 1060 aa22.18■■□□□ 1.14
SHKBP1-216ENST00000598201 USP31Q70CQ4 1352 aa22.18■■□□□ 1.14
SHKBP1-216ENST00000598201 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-216ENST00000598201 PHACTR3Q96KR7 559 aa22.16■■□□□ 1.14
SHKBP1-216ENST00000598201 MYH16Q9H6N6 1097 aa22.15■■□□□ 1.14
SHKBP1-216ENST00000598201 ROBO1Q9Y6N7 1651 aa22.15■■□□□ 1.14
SHKBP1-216ENST00000598201 SOX12O15370 315 aa22.14■■□□□ 1.13
SHKBP1-216ENST00000598201 FOXO3O43524 673 aa22.14■■□□□ 1.13
SHKBP1-216ENST00000598201 PEAK1Q9H792 1746 aa22.13■■□□□ 1.13
SHKBP1-216ENST00000598201 TSR2Q969E8 191 aaKnown RBP22.13■■□□□ 1.13
SHKBP1-216ENST00000598201 RARSP54136 660 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-216ENST00000598201 EIF4A2Q14240 407 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-216ENST00000598201 FANCIQ9NVI1 1328 aa22.12■■□□□ 1.13
SHKBP1-216ENST00000598201 PIK3C2AO00443 1686 aa22.12■■□□□ 1.13
SHKBP1-216ENST00000598201 DDX17Q92841 729 aaKnown RBP22.11■■□□□ 1.13
SHKBP1-216ENST00000598201 FBXO41Q8TF61 875 aa22.11■■□□□ 1.13
SHKBP1-216ENST00000598201 HSP90AB2PQ58FF8 381 aa22.1■■□□□ 1.13
SHKBP1-216ENST00000598201 NFE2L2Q16236 605 aa22.1■■□□□ 1.13
SHKBP1-216ENST00000598201 IL16Q14005 1332 aa22.1■■□□□ 1.13
SHKBP1-216ENST00000598201 KIF1AQ12756 1690 aa22.1■■□□□ 1.13
SHKBP1-216ENST00000598201 NPHP3Q7Z494 1330 aa22.09■■□□□ 1.13
SHKBP1-216ENST00000598201 NEFMP07197 916 aa22.09■■□□□ 1.13
SHKBP1-216ENST00000598201 MAP3K19Q56UN5 1328 aa22.08■■□□□ 1.13
SHKBP1-216ENST00000598201 PSME1Q06323 249 aa22.08■■□□□ 1.13
SHKBP1-216ENST00000598201 RBM19Q9Y4C8 960 aaKnown RBP22.08■■□□□ 1.13
SHKBP1-216ENST00000598201 NLRP6P59044 892 aa22.07■■□□□ 1.12
SHKBP1-216ENST00000598201 XPCQ01831 940 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-216ENST00000598201 NUTM2GQ5VZR2 741 aa22.07■■□□□ 1.12
SHKBP1-216ENST00000598201 AEBP1Q8IUX7 1158 aa22.07■■□□□ 1.12
SHKBP1-216ENST00000598201 EXOSC9Q06265 439 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-216ENST00000598201 BCL2L13Q9BXK5 485 aa22.06■■□□□ 1.12
SHKBP1-216ENST00000598201 KRT28Q7Z3Y7 464 aa22.05■■□□□ 1.12
SHKBP1-216ENST00000598201 THUMPD2Q9BTF0 503 aaKnown RBP22.04■■□□□ 1.12
SHKBP1-216ENST00000598201 MARF1Q9Y4F3 1742 aaKnown RBP22.04■■□□□ 1.12
SHKBP1-216ENST00000598201 PAK3O75914 559 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 SULT6B1Q6IMI4 303 aa22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 FRAT1Q92837 279 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 NHSL1Q5SYE7 1610 aa22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 SOS2Q07890 1332 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 PDE3AQ14432 1141 aa22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 ABTB2Q8N961 1025 aa22.03■■□□□ 1.12
SHKBP1-216ENST00000598201 AHDC1Q5TGY3 1603 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-216ENST00000598201 SBNO1A3KN83 1393 aa22.02■■□□□ 1.12
SHKBP1-216ENST00000598201 CANXP27824 592 aaKnown RBP22.02■■□□□ 1.11
SHKBP1-216ENST00000598201 PANK1Q8TE04 598 aa22.02■■□□□ 1.11
SHKBP1-216ENST00000598201 RGPD1P0DJD0 1748 aa22.01■■□□□ 1.11
SHKBP1-216ENST00000598201 FLT4P35916 1363 aa22.01■■□□□ 1.11
SHKBP1-216ENST00000598201 CT47B1P0C2W7 299 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-216ENST00000598201 PXDNQ92626 1479 aa22.01■■□□□ 1.11
SHKBP1-216ENST00000598201 HSPA1LP34931 641 aa22■■□□□ 1.11
SHKBP1-216ENST00000598201 TNNQ9UQP3 1299 aa22■■□□□ 1.11
SHKBP1-216ENST00000598201 USP54Q70EL1 1684 aa21.99■■□□□ 1.11
SHKBP1-216ENST00000598201 AMPHP49418 695 aa21.99■■□□□ 1.11
SHKBP1-216ENST00000598201 PHLPP1O60346 1717 aa21.99■■□□□ 1.11
SHKBP1-216ENST00000598201 DLG5Q8TDM6 1919 aa21.98■■□□□ 1.11
SHKBP1-216ENST00000598201 LRRC59Q96AG4 307 aaKnown RBP21.98■■□□□ 1.11
SHKBP1-216ENST00000598201 LAS1LQ9Y4W2 734 aaKnown RBP21.98■■□□□ 1.11
SHKBP1-216ENST00000598201 FAM83GA6ND36 823 aa21.97■■□□□ 1.11
SHKBP1-216ENST00000598201 COG6Q9Y2V7 657 aa21.97■■□□□ 1.11
SHKBP1-216ENST00000598201 KDM2BQ8NHM5 1336 aa21.97■■□□□ 1.11
SHKBP1-216ENST00000598201 RLBP1P12271 317 aa21.97■■□□□ 1.11
SHKBP1-216ENST00000598201 SSH1Q8WYL5 1049 aa21.95■■□□□ 1.11
SHKBP1-216ENST00000598201 ARHGEF10O15013 1369 aa21.95■■□□□ 1.1
SHKBP1-216ENST00000598201 COL16A1Q07092 1604 aaPredicted RBP21.95■■□□□ 1.1
SHKBP1-216ENST00000598201 DCTN1Q14203 1278 aa21.95■■□□□ 1.1
SHKBP1-216ENST00000598201 SPATA31A3Q5VYP0 1347 aa21.95■■□□□ 1.1
SHKBP1-216ENST00000598201 ZNF853P0CG23 659 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 CALD1Q05682 793 aaKnown RBP21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 LMOD3Q0VAK6 560 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 LMOD2Q6P5Q4 547 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 HOXC9P31274 260 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 SMC4Q9NTJ3 1288 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 IFT57Q9NWB7 429 aa21.94■■□□□ 1.1
SHKBP1-216ENST00000598201 SKAP1Q86WV1 359 aa21.93■■□□□ 1.1
SHKBP1-216ENST00000598201 EYA1Q99502 592 aa21.93■■□□□ 1.1
SHKBP1-216ENST00000598201 TRPM3Q9HCF6 1732 aaPredicted RBP21.93■■□□□ 1.1
SHKBP1-216ENST00000598201 CLUAP1Q96AJ1 413 aa21.92■■□□□ 1.1
SHKBP1-216ENST00000598201 TNS3Q68CZ2 1445 aa21.92■■□□□ 1.1
SHKBP1-216ENST00000598201 GNAI1P63096 354 aa21.92■■□□□ 1.1
SHKBP1-216ENST00000598201 MBIPQ9NS73 344 aa21.92■■□□□ 1.1
SHKBP1-216ENST00000598201 KIF24Q5T7B8 1368 aa21.91■■□□□ 1.1
SHKBP1-216ENST00000598201 IGSF1Q8N6C5 1336 aa21.91■■□□□ 1.1
SHKBP1-216ENST00000598201 KDRP35968 1356 aa21.91■■□□□ 1.1
SHKBP1-216ENST00000598201 CENPQQ7L2Z9 268 aaPredicted RBP21.91■■□□□ 1.1
SHKBP1-216ENST00000598201 ZKSCAN2Q63HK3 967 aa21.9■■□□□ 1.1
SHKBP1-216ENST00000598201 CFAP44Q96MT7 982 aa21.89■■□□□ 1.1
SHKBP1-216ENST00000598201 TSPYL6Q8N831 410 aa21.89■■□□□ 1.09
SHKBP1-216ENST00000598201 NFAT5O94916 1531 aa21.88■■□□□ 1.09
SHKBP1-216ENST00000598201 ALS2Q96Q42 1657 aa21.87■■□□□ 1.09
SHKBP1-216ENST00000598201 TRIM27P14373 513 aa21.87■■□□□ 1.09
SHKBP1-216ENST00000598201 MCM10Q7L590 875 aa21.87■■□□□ 1.09
SHKBP1-216ENST00000598201 ILDR1Q86SU0 546 aaPredicted RBP21.87■■□□□ 1.09
SHKBP1-216ENST00000598201 JCADQ9P266 1359 aa21.87■■□□□ 1.09
SHKBP1-216ENST00000598201 VAMP4O75379 141 aa21.86■■□□□ 1.09
SHKBP1-216ENST00000598201 MTHFSDQ2M296 383 aaKnown RBP21.86■■□□□ 1.09
SHKBP1-216ENST00000598201 LTV1Q96GA3 475 aaPredicted RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms