RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 SH3BP5LQ7L8J4 393 aa9.76□□□□□ -0.85
SMCHD1-205ENST00000581383 MAN1A2O60476 641 aa9.75□□□□□ -0.85
SMCHD1-205ENST00000581383 NR3C2P08235 984 aa9.75□□□□□ -0.85
SMCHD1-205ENST00000581383 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.75□□□□□ -0.85
SMCHD1-205ENST00000581383 NXF1Q9UBU9 619 aaKnown RBP9.75□□□□□ -0.85
SMCHD1-205ENST00000581383 EMILIN1Q9Y6C2 1016 aa9.75□□□□□ -0.85
SMCHD1-205ENST00000581383 GRM5P41594 1212 aa9.74□□□□□ -0.85
SMCHD1-205ENST00000581383 PPP2R2DQ66LE6 453 aa9.74□□□□□ -0.85
SMCHD1-205ENST00000581383 SH3RF1Q7Z6J0 888 aa9.74□□□□□ -0.85
SMCHD1-205ENST00000581383 CCDC116Q8IYX3 515 aa9.74□□□□□ -0.85
SMCHD1-205ENST00000581383 PGPEP1Q9NXJ5 209 aa9.74□□□□□ -0.85
SMCHD1-205ENST00000581383 VEGFBP49765 207 aa9.73□□□□□ -0.85
SMCHD1-205ENST00000581383 ERFEQ4G0M1 354 aa9.73□□□□□ -0.85
SMCHD1-205ENST00000581383 CDV3Q9UKY7 258 aaKnown RBP9.73□□□□□ -0.85
SMCHD1-205ENST00000581383 MAP4K5Q9Y4K4 846 aa9.73□□□□□ -0.85
SMCHD1-205ENST00000581383 USP17L8P0C7I0 530 aa9.72□□□□□ -0.85
SMCHD1-205ENST00000581383 TRMT44Q8IYL2 757 aaKnown RBP9.72□□□□□ -0.85
SMCHD1-205ENST00000581383 C1QTNF2Q9BXJ5 285 aa9.72□□□□□ -0.85
SMCHD1-205ENST00000581383 ZC3H4Q9UPT8 1303 aaKnown RBP9.72□□□□□ -0.85
SMCHD1-205ENST00000581383 RFC5P40937 340 aa9.71□□□□□ -0.86
SMCHD1-205ENST00000581383 RAB15P59190 212 aa9.71□□□□□ -0.86
SMCHD1-205ENST00000581383 GMPRP36959 345 aa9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 DHX9Q08211 1270 aaKnown RBP9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 DZIP3Q86Y13 1208 aaKnown RBP9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 LINC00528Q8N1L1 170 aa9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 IRF7Q92985 503 aa9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 KCTD15Q96SI1 283 aaPredicted RBP9.7□□□□□ -0.86
SMCHD1-205ENST00000581383 SOBPA7XYQ1 873 aa9.69□□□□□ -0.86
SMCHD1-205ENST00000581383 TSEN34Q9BSV6 310 aaKnown RBP9.69□□□□□ -0.86
SMCHD1-205ENST00000581383 KLF16Q9BXK1 252 aaPredicted RBP9.69□□□□□ -0.86
SMCHD1-205ENST00000581383 TMEM259Q4ZIN3 620 aa9.68□□□□□ -0.86
SMCHD1-205ENST00000581383 FBXO31Q5XUX0 539 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-205ENST00000581383 NBPF20Q3BBV1 942 aa9.67□□□□□ -0.86
SMCHD1-205ENST00000581383 PPP1R26Q5T8A7 1209 aaPredicted RBP9.67□□□□□ -0.86
SMCHD1-205ENST00000581383 ADAM32Q8TC27 787 aa9.67□□□□□ -0.86
SMCHD1-205ENST00000581383 NPAS3Q8IXF0 933 aa9.66□□□□□ -0.86
SMCHD1-205ENST00000581383 MEIOBQ8N635 442 aa9.66□□□□□ -0.86
SMCHD1-205ENST00000581383 EPS8L1Q8TE68 723 aa9.66□□□□□ -0.86
SMCHD1-205ENST00000581383 TIMELESSQ9UNS1 1208 aa9.66□□□□□ -0.86
SMCHD1-205ENST00000581383 GPSM3Q9Y4H4 160 aa9.66□□□□□ -0.86
SMCHD1-205ENST00000581383 GOPCQ9HD26 462 aa9.65□□□□□ -0.86
SMCHD1-205ENST00000581383 HMX1Q9NP08 348 aaPredicted RBP9.65□□□□□ -0.86
SMCHD1-205ENST00000581383 TRIM52Q96A61 297 aa9.64□□□□□ -0.87
SMCHD1-205ENST00000581383 CBLBQ13191 982 aa9.63□□□□□ -0.87
SMCHD1-205ENST00000581383 FIGNL2A6NMB9 653 aa9.62□□□□□ -0.87
SMCHD1-205ENST00000581383 TTLL8A6PVC2 850 aa9.62□□□□□ -0.87
SMCHD1-205ENST00000581383 H3BM21 787 aa9.61□□□□□ -0.87
SMCHD1-205ENST00000581383 RELBQ01201 579 aa9.61□□□□□ -0.87
SMCHD1-205ENST00000581383 INTS6LQ5JSJ4 861 aaKnown RBP9.61□□□□□ -0.87
SMCHD1-205ENST00000581383 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.6□□□□□ -0.87
SMCHD1-205ENST00000581383 KCTD17Q8N5Z5 321 aa9.6□□□□□ -0.87
SMCHD1-205ENST00000581383 POLMQ9NP87 494 aaPredicted RBP9.6□□□□□ -0.87
SMCHD1-205ENST00000581383 PCDHB9Q9Y5E1 797 aa9.6□□□□□ -0.87
SMCHD1-205ENST00000581383 ESF1Q9H501 851 aaKnown RBP9.59□□□□□ -0.87
SMCHD1-205ENST00000581383 APBB1O00213 710 aa9.58□□□□□ -0.88
SMCHD1-205ENST00000581383 C14orf37Q86TY3 774 aa9.58□□□□□ -0.88
SMCHD1-205ENST00000581383 AGBL1Q96MI9 1066 aa9.58□□□□□ -0.88
SMCHD1-205ENST00000581383 ZNF330Q9Y3S2 320 aaPredicted RBP9.58□□□□□ -0.88
SMCHD1-205ENST00000581383 SOS2Q07890 1332 aaPredicted RBP9.57□□□□□ -0.88
SMCHD1-205ENST00000581383 TMPRSS4Q9NRS4 437 aa9.57□□□□□ -0.88
SMCHD1-205ENST00000581383 DNMT3LQ9UJW3 386 aa9.57□□□□□ -0.88
SMCHD1-205ENST00000581383 ZBBXA8MT70 800 aa9.56□□□□□ -0.88
SMCHD1-205ENST00000581383 KCNMA1Q12791 1236 aa9.56□□□□□ -0.88
SMCHD1-205ENST00000581383 ERICH6Q7L0X2 663 aa9.56□□□□□ -0.88
SMCHD1-205ENST00000581383 ZNF395Q9H8N7 513 aaPredicted RBP9.56□□□□□ -0.88
SMCHD1-205ENST00000581383 Q6ZVU0 165 aa9.55□□□□□ -0.88
SMCHD1-205ENST00000581383 OCSTAMPQ9BR26 566 aa9.55□□□□□ -0.88
SMCHD1-205ENST00000581383 ERVH48-1M5A8F1 160 aa9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 PPFIA3O75145 1194 aa9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 ZNF784Q8NCA9 323 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 ZNF592Q92610 1267 aa9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 INSM2Q96T92 566 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 ERBB4Q15303 1308 aa9.54□□□□□ -0.88
SMCHD1-205ENST00000581383 SPINT1O43278 529 aa9.53□□□□□ -0.88
SMCHD1-205ENST00000581383 TRIM34Q9BYJ4 488 aa9.53□□□□□ -0.88
SMCHD1-205ENST00000581383 PRM3Q9NNZ6 103 aa9.53□□□□□ -0.88
SMCHD1-205ENST00000581383 CYLDQ9NQC7 956 aa9.53□□□□□ -0.88
SMCHD1-205ENST00000581383 PTSQ03393 145 aa9.52□□□□□ -0.89
SMCHD1-205ENST00000581383 RNF20Q5VTR2 975 aa9.51□□□□□ -0.89
SMCHD1-205ENST00000581383 SEPT12Q8IYM1 358 aa9.51□□□□□ -0.89
SMCHD1-205ENST00000581383 NDUFB9Q9Y6M9 179 aa9.51□□□□□ -0.89
SMCHD1-205ENST00000581383 ADH1AP07327 375 aa9.5□□□□□ -0.89
SMCHD1-205ENST00000581383 FBXO45P0C2W1 286 aa9.5□□□□□ -0.89
SMCHD1-205ENST00000581383 CTSOP43234 321 aaPredicted RBP9.5□□□□□ -0.89
SMCHD1-205ENST00000581383 GSK3AP49840 483 aa9.5□□□□□ -0.89
SMCHD1-205ENST00000581383 BANK1Q8NDB2 785 aa9.5□□□□□ -0.89
SMCHD1-205ENST00000581383 CDC14CA4D256 554 aa9.49□□□□□ -0.89
SMCHD1-205ENST00000581383 GIGYF1O75420 1035 aaPredicted RBP9.49□□□□□ -0.89
SMCHD1-205ENST00000581383 MEN1O00255 615 aa9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 PTGIRP43119 386 aa9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 MCCD1P59942 119 aaPredicted RBP9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 NR1H3Q13133 447 aa9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 CCDC155Q8N6L0 562 aa9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 GJD4Q96KN9 370 aaPredicted RBP9.47□□□□□ -0.89
SMCHD1-205ENST00000581383 ESPNB1AK53 854 aa9.46□□□□□ -0.9
SMCHD1-205ENST00000581383 ATP5J2-PTCD1G3V325 749 aa9.46□□□□□ -0.9
SMCHD1-205ENST00000581383 CCDC125Q86Z20 511 aa9.46□□□□□ -0.9
SMCHD1-205ENST00000581383 TMEM151AQ8N4L1 468 aa9.46□□□□□ -0.9
SMCHD1-205ENST00000581383 ADD1P35611 737 aaKnown RBP9.45□□□□□ -0.9
SMCHD1-205ENST00000581383 LYSMD3Q7Z3D4 306 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms