RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 POLR3GLQ9BT43 218 aa28■■■□□ 2.07
SS18-218ENST00000581021 NSD3Q9BZ95 1437 aa27.99■■■□□ 2.07
SS18-218ENST00000581021 UPF1Q92900 1129 aaKnown RBP eCLIP27.98■■■□□ 2.07
SS18-218ENST00000581021 RGPD5Q99666 1765 aa27.97■■■□□ 2.07
SS18-218ENST00000581021 FYB1O15117 783 aa27.97■■■□□ 2.07
SS18-218ENST00000581021 LTN1O94822 1766 aa27.96■■■□□ 2.07
SS18-218ENST00000581021 EVA1CP58658 441 aa27.96■■■□□ 2.07
SS18-218ENST00000581021 ABCC6O95255 1503 aa27.96■■■□□ 2.07
SS18-218ENST00000581021 KIF20BQ96Q89 1820 aa27.95■■■□□ 2.07
SS18-218ENST00000581021 GGNBP2Q9H3C7 697 aa27.95■■■□□ 2.06
SS18-218ENST00000581021 USP35Q9P2H5 1018 aa27.94■■■□□ 2.06
SS18-218ENST00000581021 FBLN1P23142 703 aa27.93■■■□□ 2.06
SS18-218ENST00000581021 COG3Q96JB2 828 aa27.92■■■□□ 2.06
SS18-218ENST00000581021 CRB1P82279 1406 aa27.92■■■□□ 2.06
SS18-218ENST00000581021 KIF7Q2M1P5 1343 aa27.91■■■□□ 2.06
SS18-218ENST00000581021 WDR17Q8IZU2 1322 aa27.9■■■□□ 2.06
SS18-218ENST00000581021 A0A0G2JS52 829 aa27.88■■■□□ 2.05
SS18-218ENST00000581021 MYT1Q01538 1121 aa27.88■■■□□ 2.05
SS18-218ENST00000581021 BARGINQ6ZT62 677 aa27.87■■■□□ 2.05
SS18-218ENST00000581021 TCP11L2Q8N4U5 519 aa27.87■■■□□ 2.05
SS18-218ENST00000581021 MAP3K19Q56UN5 1328 aa27.87■■■□□ 2.05
SS18-218ENST00000581021 KRT27Q7Z3Y8 459 aa27.85■■■□□ 2.05
SS18-218ENST00000581021 PANK3Q9H999 370 aa27.85■■■□□ 2.05
SS18-218ENST00000581021 TOM1L2Q6ZVM7 507 aa27.84■■■□□ 2.05
SS18-218ENST00000581021 ERBB3P21860 1342 aa27.84■■■□□ 2.05
SS18-218ENST00000581021 RRS1Q15050 365 aaKnown RBP27.82■■■□□ 2.04
SS18-218ENST00000581021 WNK3Q9BYP7 1800 aa27.82■■■□□ 2.04
SS18-218ENST00000581021 FAM182BQ5T319 152 aa27.81■■■□□ 2.04
SS18-218ENST00000581021 IP6K1Q92551 441 aa27.81■■■□□ 2.04
SS18-218ENST00000581021 THRAP3Q9Y2W1 955 aaKnown RBP27.81■■■□□ 2.04
SS18-218ENST00000581021 BLMP54132 1417 aaPredicted RBP27.81■■■□□ 2.04
SS18-218ENST00000581021 PEAK1Q9H792 1746 aa27.81■■■□□ 2.04
SS18-218ENST00000581021 PARP4Q9UKK3 1724 aaKnown RBP27.81■■■□□ 2.04
SS18-218ENST00000581021 CSB-PGBD3P0DP91 1061 aa27.8■■■□□ 2.04
SS18-218ENST00000581021 CGNL1Q0VF96 1302 aa27.8■■■□□ 2.04
SS18-218ENST00000581021 LRRC37A3O60309 1634 aa27.79■■■□□ 2.04
SS18-218ENST00000581021 DISP2A7MBM2 1401 aa27.79■■■□□ 2.04
SS18-218ENST00000581021 CCDC7Q96M83 1385 aa27.78■■■□□ 2.04
SS18-218ENST00000581021 WASHC2AQ641Q2 1341 aa27.78■■■□□ 2.04
SS18-218ENST00000581021 HOXC9P31274 260 aa27.78■■■□□ 2.04
SS18-218ENST00000581021 ANKRD24Q8TF21 1146 aa27.78■■■□□ 2.04
SS18-218ENST00000581021 CARD10Q9BWT7 1032 aa27.78■■■□□ 2.04
SS18-218ENST00000581021 ANKRD26Q9UPS8 1709 aa27.76■■■□□ 2.03
SS18-218ENST00000581021 RTL1A6NKG5 1358 aa27.75■■■□□ 2.03
SS18-218ENST00000581021 AMPHP49418 695 aa27.73■■■□□ 2.03
SS18-218ENST00000581021 LTV1Q96GA3 475 aaPredicted RBP27.73■■■□□ 2.03
SS18-218ENST00000581021 NLRP2Q9NX02 1062 aa27.72■■■□□ 2.03
SS18-218ENST00000581021 EMILIN1Q9Y6C2 1016 aa27.72■■■□□ 2.03
SS18-218ENST00000581021 FAM208AQ9UK61 1670 aaKnown RBP27.7■■■□□ 2.02
SS18-218ENST00000581021 HSP90AB2PQ58FF8 381 aa27.69■■■□□ 2.02
SS18-218ENST00000581021 RGPD2P0DJD1 1756 aa27.68■■■□□ 2.02
SS18-218ENST00000581021 FLT4P35916 1363 aa27.68■■■□□ 2.02
SS18-218ENST00000581021 NSD2O96028 1365 aa27.67■■■□□ 2.02
SS18-218ENST00000581021 INSRP06213 1382 aa27.66■■■□□ 2.02
SS18-218ENST00000581021 KIF24Q5T7B8 1368 aa27.66■■■□□ 2.02
SS18-218ENST00000581021 PDE3BQ13370 1112 aa27.66■■■□□ 2.02
SS18-218ENST00000581021 AMER1Q5JTC6 1135 aaPredicted RBP27.66■■■□□ 2.02
SS18-218ENST00000581021 TNS1Q9HBL0 1735 aaKnown RBP27.65■■■□□ 2.02
SS18-218ENST00000581021 PER1O15534 1290 aaPredicted RBP27.65■■■□□ 2.02
SS18-218ENST00000581021 TNNT2P45379 298 aaPredicted RBP27.65■■■□□ 2.02
SS18-218ENST00000581021 DDB1Q16531 1140 aa27.65■■■□□ 2.02
SS18-218ENST00000581021 CCDC125Q86Z20 511 aa27.65■■■□□ 2.02
SS18-218ENST00000581021 CDCA7Q9BWT1 371 aaPredicted RBP27.64■■■□□ 2.02
SS18-218ENST00000581021 POLKQ9UBT6 870 aa27.64■■■□□ 2.02
SS18-218ENST00000581021 TNS2Q63HR2 1409 aa27.64■■■□□ 2.02
SS18-218ENST00000581021 KNSTRNQ9Y448 316 aa27.63■■■□□ 2.01
SS18-218ENST00000581021 MAP2P11137 1827 aaKnown RBP27.62■■■□□ 2.01
SS18-218ENST00000581021 DEFB132Q7Z7B7 95 aa27.62■■■□□ 2.01
SS18-218ENST00000581021 MARCH10Q8NA82 808 aaPredicted RBP27.62■■■□□ 2.01
SS18-218ENST00000581021 RGPD1P0DJD0 1748 aa27.61■■■□□ 2.01
SS18-218ENST00000581021 NBPF6Q5VWK0 638 aa27.61■■■□□ 2.01
SS18-218ENST00000581021 FAM196AQ6ZSG2 479 aa27.61■■■□□ 2.01
SS18-218ENST00000581021 NBPF4Q96M43 638 aa27.61■■■□□ 2.01
SS18-218ENST00000581021 IL2RBP14784 551 aa27.6■■■□□ 2.01
SS18-218ENST00000581021 OVOS2A0A0G2JMS6 1433 aa27.59■■■□□ 2.01
SS18-218ENST00000581021 SMG6Q86US8 1419 aaKnown RBP27.59■■■□□ 2.01
SS18-218ENST00000581021 MEGF6O75095 1541 aa27.59■■■□□ 2.01
SS18-218ENST00000581021 PPM1GO15355 546 aaPredicted RBP27.59■■■□□ 2.01
SS18-218ENST00000581021 USHBP1Q8N6Y0 703 aa27.59■■■□□ 2.01
SS18-218ENST00000581021 TRIM37O94972 964 aa27.58■■■□□ 2.01
SS18-218ENST00000581021 MORC1Q86VD1 984 aa27.56■■■□□ 2
SS18-218ENST00000581021 EXOC5O00471 708 aa27.54■■■□□ 2
SS18-218ENST00000581021 BCL9O00512 1426 aa27.53■■■□□ 2
SS18-218ENST00000581021 NCAPD2Q15021 1401 aa27.53■■■□□ 2
SS18-218ENST00000581021 SF3B2Q13435 895 aaKnown RBP27.53■■■□□ 2
SS18-218ENST00000581021 PTF1AQ7RTS3 328 aa27.53■■■□□ 2
SS18-218ENST00000581021 SBF2Q86WG5 1849 aa27.53■■■□□ 2
SS18-218ENST00000581021 SHANK3Q9BYB0 1731 aa27.53■■■□□ 2
SS18-218ENST00000581021 CC2D1BQ5T0F9 858 aaKnown RBP27.51■■□□□ 1.99
SS18-218ENST00000581021 EN1Q05925 392 aaPredicted RBP27.49■■□□□ 1.99
SS18-218ENST00000581021 EIF4A2Q14240 407 aaKnown RBP27.49■■□□□ 1.99
SS18-218ENST00000581021 NPC1L1Q9UHC9 1359 aa27.48■■□□□ 1.99
SS18-218ENST00000581021 BAG6P46379 1132 aa27.47■■□□□ 1.99
SS18-218ENST00000581021 EYA1Q99502 592 aa27.47■■□□□ 1.99
SS18-218ENST00000581021 APBA3O96018 575 aa27.44■■□□□ 1.98
SS18-218ENST00000581021 CNGB1Q14028 1251 aaPredicted RBP27.44■■□□□ 1.98
SS18-218ENST00000581021 CAMKK2Q96RR4 588 aa27.43■■□□□ 1.98
SS18-218ENST00000581021 NHSQ6T4R5 1651 aa27.43■■□□□ 1.98
SS18-218ENST00000581021 EZH2Q15910 746 aaKnown RBP27.42■■□□□ 1.98
SS18-218ENST00000581021 DDX54Q8TDD1 881 aaKnown RBP27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms