RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 FCF1Q9Y324 198 aaKnown RBP8.74□□□□□ -1.01
LINC00560-201ENST00000564593 PALM3A6NDB9 673 aaPredicted RBP8.73□□□□□ -1.01
LINC00560-201ENST00000564593 UCN2Q96RP3 112 aa8.73□□□□□ -1.01
LINC00560-201ENST00000564593 TFIP11Q9UBB9 837 aaKnown RBP8.73□□□□□ -1.01
LINC00560-201ENST00000564593 PPP1R15AO75807 674 aaPredicted RBP8.73□□□□□ -1.01
LINC00560-201ENST00000564593 CFAP70Q5T0N1 1121 aa8.73□□□□□ -1.01
LINC00560-201ENST00000564593 ARHGAP9Q9BRR9 750 aa8.73□□□□□ -1.01
LINC00560-201ENST00000564593 BAP1Q92560 729 aa8.72□□□□□ -1.01
LINC00560-201ENST00000564593 OCSTAMPQ9BR26 566 aa8.72□□□□□ -1.01
LINC00560-201ENST00000564593 ACIN1Q9UKV3 1341 aaKnown RBP8.72□□□□□ -1.01
LINC00560-201ENST00000564593 LMOD1P29536 600 aaPredicted RBP8.71□□□□□ -1.02
LINC00560-201ENST00000564593 LCE2CQ5TA81 110 aa8.71□□□□□ -1.02
LINC00560-201ENST00000564593 ZBTB33Q86T24 672 aa8.71□□□□□ -1.02
LINC00560-201ENST00000564593 ZNF592Q92610 1267 aa8.71□□□□□ -1.02
LINC00560-201ENST00000564593 PCDHB9Q9Y5E1 797 aa8.71□□□□□ -1.02
LINC00560-201ENST00000564593 TTC24A2A3L6 582 aaPredicted RBP8.7□□□□□ -1.02
LINC00560-201ENST00000564593 PDIA4P13667 645 aaKnown RBP8.7□□□□□ -1.02
LINC00560-201ENST00000564593 TBC1D9Q6ZT07 1266 aa8.7□□□□□ -1.02
LINC00560-201ENST00000564593 SH3BP5LQ7L8J4 393 aa8.7□□□□□ -1.02
LINC00560-201ENST00000564593 ADAM32Q8TC27 787 aa8.7□□□□□ -1.02
LINC00560-201ENST00000564593 PBXIP1Q96AQ6 731 aa8.7□□□□□ -1.02
LINC00560-201ENST00000564593 TERTO14746 1132 aaKnown RBP8.69□□□□□ -1.02
LINC00560-201ENST00000564593 MCCD1P59942 119 aaPredicted RBP8.69□□□□□ -1.02
LINC00560-201ENST00000564593 AGERQ15109 404 aa8.69□□□□□ -1.02
LINC00560-201ENST00000564593 LINC01559Q495D7 138 aa8.69□□□□□ -1.02
LINC00560-201ENST00000564593 ATP13A2Q9NQ11 1180 aa8.69□□□□□ -1.02
LINC00560-201ENST00000564593 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.69□□□□□ -1.02
LINC00560-201ENST00000564593 SNRPBP14678 240 aaKnown RBP8.69□□□□□ -1.02
LINC00560-201ENST00000564593 CARD14Q9BXL6 1004 aa8.69□□□□□ -1.02
LINC00560-201ENST00000564593 MAGEB6P1A0A0J9YX57 407 aa8.68□□□□□ -1.02
LINC00560-201ENST00000564593 ATP9BO43861 1147 aa8.68□□□□□ -1.02
LINC00560-201ENST00000564593 BPHLQ86WA6 291 aaPredicted RBP8.68□□□□□ -1.02
LINC00560-201ENST00000564593 ZNF511Q8NB15 262 aa8.68□□□□□ -1.02
LINC00560-201ENST00000564593 TRIM47Q96LD4 638 aa8.68□□□□□ -1.02
LINC00560-201ENST00000564593 CEP126Q9P2H0 1117 aa8.68□□□□□ -1.02
LINC00560-201ENST00000564593 MAFBQ9Y5Q3 323 aaPredicted RBP8.68□□□□□ -1.02
LINC00560-201ENST00000564593 PIK3CDO00329 1044 aa8.67□□□□□ -1.02
LINC00560-201ENST00000564593 WNT7AO00755 349 aa8.67□□□□□ -1.02
LINC00560-201ENST00000564593 ZBTB24O43167 697 aaPredicted RBP8.67□□□□□ -1.02
LINC00560-201ENST00000564593 SMPD1P17405 629 aa8.67□□□□□ -1.02
LINC00560-201ENST00000564593 FOXJ1Q92949 421 aa8.67□□□□□ -1.02
LINC00560-201ENST00000564593 SENP2Q9HC62 589 aa8.67□□□□□ -1.02
LINC00560-201ENST00000564593 SLFNL1Q499Z3 407 aa8.66□□□□□ -1.02
LINC00560-201ENST00000564593 SH3RF1Q7Z6J0 888 aa8.66□□□□□ -1.02
LINC00560-201ENST00000564593 DZIP3Q86Y13 1208 aaKnown RBP8.66□□□□□ -1.02
LINC00560-201ENST00000564593 RETREG2Q8NC44 543 aa8.66□□□□□ -1.02
LINC00560-201ENST00000564593 SNIP1Q8TAD8 396 aaKnown RBP8.66□□□□□ -1.02
LINC00560-201ENST00000564593 SKIP12755 728 aa8.65□□□□□ -1.02
LINC00560-201ENST00000564593 SRPK2P78362 688 aaKnown RBP8.65□□□□□ -1.02
LINC00560-201ENST00000564593 NFATC2IPQ8NCF5 419 aa8.65□□□□□ -1.02
LINC00560-201ENST00000564593 CDCA8Q53HL2 280 aa8.65□□□□□ -1.03
LINC00560-201ENST00000564593 SH3BP2P78314 561 aa8.64□□□□□ -1.03
LINC00560-201ENST00000564593 C4orf48Q5BLP8 95 aa8.64□□□□□ -1.03
LINC00560-201ENST00000564593 RNF135Q8IUD6 432 aa8.64□□□□□ -1.03
LINC00560-201ENST00000564593 FAM174AQ8TBP5 190 aa8.64□□□□□ -1.03
LINC00560-201ENST00000564593 ERFEQ4G0M1 354 aa8.63□□□□□ -1.03
LINC00560-201ENST00000564593 TRIM32Q13049 653 aa8.62□□□□□ -1.03
LINC00560-201ENST00000564593 PHTF2Q8N3S3 785 aa8.62□□□□□ -1.03
LINC00560-201ENST00000564593 KIFC2Q96AC6 838 aa8.62□□□□□ -1.03
LINC00560-201ENST00000564593 VRTNQ9H8Y1 702 aa8.62□□□□□ -1.03
LINC00560-201ENST00000564593 USP17L3A6NCW0 530 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 USP17L4A6NCW7 530 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 FAM181BA6NEQ2 426 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 USP17L5A8MUK1 530 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 USP17L2Q6R6M4 530 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 USP17L1Q7RTZ2 530 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 SLC10A4Q96EP9 437 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 TRAIPQ9BWF2 469 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 CSB-PGBD3P0DP91 1061 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 PDE4CQ08493 712 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 DEPDC4Q8N2C3 294 aa8.61□□□□□ -1.03
LINC00560-201ENST00000564593 J3QL48 77 aa8.6□□□□□ -1.03
LINC00560-201ENST00000564593 KANK4Q5T7N3 995 aaPredicted RBP8.6□□□□□ -1.03
LINC00560-201ENST00000564593 PLEKHM2Q8IWE5 1019 aa8.6□□□□□ -1.03
LINC00560-201ENST00000564593 PLPP7Q8NBV4 271 aa8.6□□□□□ -1.03
LINC00560-201ENST00000564593 MRGPRX2Q96LB1 330 aa8.6□□□□□ -1.03
LINC00560-201ENST00000564593 GIGYF1O75420 1035 aaPredicted RBP8.59□□□□□ -1.03
LINC00560-201ENST00000564593 ATG7O95352 703 aa8.59□□□□□ -1.03
LINC00560-201ENST00000564593 C1QTNF2Q9BXJ5 285 aa8.59□□□□□ -1.03
LINC00560-201ENST00000564593 WNT7BP56706 349 aa8.58□□□□□ -1.04
LINC00560-201ENST00000564593 SKOR1P84550 965 aa8.58□□□□□ -1.04
LINC00560-201ENST00000564593 TRIM26Q12899 539 aaPredicted RBP8.58□□□□□ -1.04
LINC00560-201ENST00000564593 MAP7D1Q3KQU3 841 aa8.58□□□□□ -1.04
LINC00560-201ENST00000564593 LZTS3O60299 673 aaPredicted RBP8.57□□□□□ -1.04
LINC00560-201ENST00000564593 VARSP26640 1264 aaKnown RBP8.57□□□□□ -1.04
LINC00560-201ENST00000564593 NCOA4Q13772 614 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 NBPF20Q3BBV1 942 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 TSGA10IPQ3SY00 556 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 RNF20Q5VTR2 975 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 TRMT44Q8IYL2 757 aaKnown RBP8.57□□□□□ -1.04
LINC00560-201ENST00000564593 SLC16A10Q8TF71 515 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 HPS1Q92902 700 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 MKRN1Q9UHC7 482 aaKnown RBP8.57□□□□□ -1.04
LINC00560-201ENST00000564593 CHIC2Q9UKJ5 165 aa8.57□□□□□ -1.04
LINC00560-201ENST00000564593 CDV3Q9UKY7 258 aaKnown RBP8.57□□□□□ -1.04
LINC00560-201ENST00000564593 DOLKQ9UPQ8 538 aa8.56□□□□□ -1.04
LINC00560-201ENST00000564593 EML3Q32P44 896 aa8.56□□□□□ -1.04
LINC00560-201ENST00000564593 CCDC85AQ96PX6 553 aaPredicted RBP8.56□□□□□ -1.04
LINC00560-201ENST00000564593 EHBP1Q8NDI1 1231 aa8.55□□□□□ -1.04
LINC00560-201ENST00000564593 USTQ9Y2C2 406 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms