RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-208	ENST00000563911	RNF166	Q96A37	237 aa	Predicted RBP	10.29	□□□□□ -0.76
HERPUD1-208	ENST00000563911	ALG2	Q9H553	416 aa		10.29	□□□□□ -0.76
HERPUD1-208	ENST00000563911	S1PR4	O95977	384 aa		10.28	□□□□□ -0.76
HERPUD1-208	ENST00000563911	FBXO45	P0C2W1	286 aa		10.28	□□□□□ -0.76
HERPUD1-208	ENST00000563911	PCDH10	Q9P2E7	1040 aa		10.28	□□□□□ -0.76
HERPUD1-208	ENST00000563911	ABCC10	Q5T3U5	1492 aa		10.28	□□□□□ -0.76
HERPUD1-208	ENST00000563911	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.27	□□□□□ -0.77
HERPUD1-208	ENST00000563911	FHAD1	B1AJZ9	1412 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	KCNC4	Q03721	635 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	PTK2	Q05397	1052 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	NBPF14	Q5TI25	921 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	SPNS2	Q8IVW8	549 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.26	□□□□□ -0.77	2e-6	■■□□□ 11.5
HERPUD1-208	ENST00000563911	UNC93B1	Q9H1C4	597 aa		10.26	□□□□□ -0.77
HERPUD1-208	ENST00000563911	PDXDC2P	Q6P474	469 aa		10.25	□□□□□ -0.77
HERPUD1-208	ENST00000563911	FCF1	Q9Y324	198 aa	Known RBP	10.24	□□□□□ -0.77
HERPUD1-208	ENST00000563911	GPSM3	Q9Y4H4	160 aa		10.24	□□□□□ -0.77
HERPUD1-208	ENST00000563911	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.24	□□□□□ -0.77
HERPUD1-208	ENST00000563911	DIP2B	Q9P265	1576 aa		10.23	□□□□□ -0.77
HERPUD1-208	ENST00000563911	ADCY10	Q96PN6	1610 aa		10.22	□□□□□ -0.77
HERPUD1-208	ENST00000563911	PPP1R12C	Q9BZL4	782 aa		10.22	□□□□□ -0.77
HERPUD1-208	ENST00000563911	RFX1	P22670	979 aa		10.21	□□□□□ -0.77
HERPUD1-208	ENST00000563911	ARHGAP9	Q9BRR9	750 aa		10.21	□□□□□ -0.77
HERPUD1-208	ENST00000563911	MAPKBP1	O60336	1514 aa		10.21	□□□□□ -0.78
HERPUD1-208	ENST00000563911	PPEF1	O14829	653 aa	Predicted RBP	10.2	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ITGBL1	O95965	494 aa	Predicted RBP	10.2	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ZBTB33	Q86T24	672 aa		10.2	□□□□□ -0.78
HERPUD1-208	ENST00000563911	BAP1	Q92560	729 aa		10.2	□□□□□ -0.78
HERPUD1-208	ENST00000563911	TFIP11	Q9UBB9	837 aa	Known RBP	10.2	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ERICH3	Q5RHP9	1530 aa		10.19	□□□□□ -0.78
HERPUD1-208	ENST00000563911	PALM3	A6NDB9	673 aa	Predicted RBP	10.19	□□□□□ -0.78
HERPUD1-208	ENST00000563911	AGER	Q15109	404 aa		10.19	□□□□□ -0.78
HERPUD1-208	ENST00000563911	UCN2	Q96RP3	112 aa		10.19	□□□□□ -0.78
HERPUD1-208	ENST00000563911	PCDHB9	Q9Y5E1	797 aa		10.19	□□□□□ -0.78
HERPUD1-208	ENST00000563911	TOP2B	Q02880	1626 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ACIN1	Q9UKV3	1341 aa	Known RBP	10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	GGCX	P38435	758 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	LINC01559	Q495D7	138 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	CFAP70	Q5T0N1	1121 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ADAM32	Q8TC27	787 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	OCSTAMP	Q9BR26	566 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	KDM6B	O15054	1643 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	BIVM-ERCC5	R4GMW8	1640 aa		10.18	□□□□□ -0.78
HERPUD1-208	ENST00000563911	RUSC2	Q8N2Y8	1516 aa		10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	MAGEB6P1	A0A0J9YX57	407 aa		10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ZBTB24	O43167	697 aa	Predicted RBP	10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	PPP1R15A	O75807	674 aa	Predicted RBP	10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	LMOD1	P29536	600 aa	Predicted RBP	10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	SH3BP5L	Q7L8J4	393 aa		10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ZNF592	Q92610	1267 aa		10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	CARD14	Q9BXL6	1004 aa		10.17	□□□□□ -0.78
HERPUD1-208	ENST00000563911	RNF223	E7ERA6	249 aa		10.16	□□□□□ -0.78
HERPUD1-208	ENST00000563911	MCCD1	P59942	119 aa	Predicted RBP	10.16	□□□□□ -0.78
HERPUD1-208	ENST00000563911	TBC1D9	Q6ZT07	1266 aa		10.16	□□□□□ -0.78
HERPUD1-208	ENST00000563911	BPHL	Q86WA6	291 aa	Predicted RBP	10.16	□□□□□ -0.78
HERPUD1-208	ENST00000563911	TSPOAP1	O95153	1857 aa		10.16	□□□□□ -0.78
HERPUD1-208	ENST00000563911	ZNF511	Q8NB15	262 aa		10.15	□□□□□ -0.78
HERPUD1-208	ENST00000563911	PBXIP1	Q96AQ6	731 aa		10.15	□□□□□ -0.78
HERPUD1-208	ENST00000563911	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.14	□□□□□ -0.79
HERPUD1-208	ENST00000563911	PDIA4	P13667	645 aa	Known RBP	10.14	□□□□□ -0.79
HERPUD1-208	ENST00000563911	DZIP3	Q86Y13	1208 aa	Known RBP	10.14	□□□□□ -0.79
HERPUD1-208	ENST00000563911	FOXJ1	Q92949	421 aa		10.14	□□□□□ -0.79
HERPUD1-208	ENST00000563911	CEP126	Q9P2H0	1117 aa		10.14	□□□□□ -0.79
HERPUD1-208	ENST00000563911	PIK3CD	O00329	1044 aa		10.13	□□□□□ -0.79
HERPUD1-208	ENST00000563911	ATP9B	O43861	1147 aa		10.13	□□□□□ -0.79
HERPUD1-208	ENST00000563911	SLFNL1	Q499Z3	407 aa		10.13	□□□□□ -0.79
HERPUD1-208	ENST00000563911	ANKLE1	Q8NAG6	615 aa		10.13	□□□□□ -0.79
HERPUD1-208	ENST00000563911	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.13	□□□□□ -0.79
HERPUD1-208	ENST00000563911	PPRC1	Q5VV67	1664 aa	Known RBP	10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	ADGRL1	O94910	1474 aa		10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	SKI	P12755	728 aa		10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	PPP1R18	Q6NYC8	613 aa		10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	SH3RF1	Q7Z6J0	888 aa		10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	IGF1R	P08069	1367 aa		10.12	□□□□□ -0.79
HERPUD1-208	ENST00000563911	SH3BP2	P78314	561 aa		10.11	□□□□□ -0.79
HERPUD1-208	ENST00000563911	NFATC2IP	Q8NCF5	419 aa		10.11	□□□□□ -0.79
HERPUD1-208	ENST00000563911	TTBK1	Q5TCY1	1321 aa	Predicted RBP	10.1	□□□□□ -0.79
HERPUD1-208	ENST00000563911	CDCA8	Q53HL2	280 aa		10.1	□□□□□ -0.79
HERPUD1-208	ENST00000563911	C4orf48	Q5BLP8	95 aa		10.1	□□□□□ -0.79
HERPUD1-208	ENST00000563911	PLA2G2C	Q5R387	149 aa		10.1	□□□□□ -0.79
HERPUD1-208	ENST00000563911	KIAA0586	Q9BVV6	1533 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	TRIM32	Q13049	653 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	MMRN1	Q13201	1228 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	ERFE	Q4G0M1	354 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	RNF135	Q8IUD6	432 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	RETREG2	Q8NC44	543 aa		10.09	□□□□□ -0.79
HERPUD1-208	ENST00000563911	SRPK2	P78362	688 aa	Known RBP	10.08	□□□□□ -0.8
HERPUD1-208	ENST00000563911	FAM174A	Q8TBP5	190 aa		10.08	□□□□□ -0.8
HERPUD1-208	ENST00000563911	PTPRG	P23470	1445 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	ASXL2	Q76L83	1435 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	HECW2	Q9P2P5	1572 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	USP17L5	A8MUK1	530 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	SLC10A4	Q96EP9	437 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	VRTN	Q9H8Y1	702 aa		10.07	□□□□□ -0.8
HERPUD1-208	ENST00000563911	USP17L3	A6NCW0	530 aa		10.06	□□□□□ -0.8
HERPUD1-208	ENST00000563911	USP17L4	A6NCW7	530 aa		10.06	□□□□□ -0.8
HERPUD1-208	ENST00000563911	USP17L2	Q6R6M4	530 aa		10.06	□□□□□ -0.8
HERPUD1-208	ENST00000563911	USP17L1	Q7RTZ2	530 aa		10.06	□□□□□ -0.8

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