RNA–Protein interactions for RNA: ENST00000562836.5

CDH1-205, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 2,759 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-205ENST00000562836 IQSEC3Q9UPP2 1182 aaPredicted RBP11.32□□□□□ -0.6
CDH1-205ENST00000562836 CCP110O43303 1012 aa11.32□□□□□ -0.6
CDH1-205ENST00000562836 MECOMQ03112 1051 aa11.32□□□□□ -0.6
CDH1-205ENST00000562836 LONRF3Q496Y0 759 aa11.32□□□□□ -0.6
CDH1-205ENST00000562836 BCL2L12Q9HB09 334 aa11.32□□□□□ -0.6
CDH1-205ENST00000562836 NOLC1Q14978 699 aaKnown RBP eCLIP11.31□□□□□ -0.6
CDH1-205ENST00000562836 E2F5Q15329 346 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 ANKRD20A12PQ8NF67 263 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 TATDN2Q93075 761 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.31□□□□□ -0.6
CDH1-205ENST00000562836 IRF5Q13568 498 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 ZFYVE27Q5T4F4 411 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 MAMSTRQ6ZN01 415 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 GAS2L3Q86XJ1 694 aa11.31□□□□□ -0.6
CDH1-205ENST00000562836 CPSF2Q9P2I0 782 aaKnown RBP11.31□□□□□ -0.6
CDH1-205ENST00000562836 PUF60Q9UHX1 559 aaKnown RBP11.31□□□□□ -0.6
CDH1-205ENST00000562836 PPFIA2O75334 1257 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 NFXL1Q6ZNB6 911 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 SUN2Q9UH99 717 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 ANKRD18BA2A2Z9 1011 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 BMS1Q14692 1282 aaKnown RBP11.3□□□□□ -0.6
CDH1-205ENST00000562836 AMOTQ4VCS5 1084 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 CDC37L1Q7L3B6 337 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 TEX13AQ9BXU3 409 aaPredicted RBP11.3□□□□□ -0.6
CDH1-205ENST00000562836 SLC24A3Q9HC58 644 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 CEP126Q9P2H0 1117 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 POLKQ9UBT6 870 aa11.3□□□□□ -0.6
CDH1-205ENST00000562836 MYO1CO00159 1063 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 TTC30BQ8N4P2 665 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 BICRAQ9NZM4 1560 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 RAD50Q92878 1312 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 MAP4K4O95819 1239 aaPredicted RBP11.29□□□□□ -0.6
CDH1-205ENST00000562836 MYBL2P10244 700 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 EXOC6Q8TAG9 804 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 PCDHGA4Q9Y5G9 962 aa11.29□□□□□ -0.6
CDH1-205ENST00000562836 IGHDP01880 384 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 MCM4P33991 863 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 GTF2F1P35269 517 aaKnown RBP eCLIP11.28□□□□□ -0.6
CDH1-205ENST00000562836 LMNB1P20700 586 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 PKD2Q13563 968 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 AP1ARQ63HQ0 302 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 DZIP3Q86Y13 1208 aaKnown RBP11.28□□□□□ -0.6
CDH1-205ENST00000562836 YIPF2Q9BWQ6 316 aa11.28□□□□□ -0.6
CDH1-205ENST00000562836 IL16Q14005 1332 aa11.27□□□□□ -0.6
CDH1-205ENST00000562836 IPO5O00410 1097 aaKnown RBP11.27□□□□□ -0.61
CDH1-205ENST00000562836 CHAF1AQ13111 956 aaPredicted RBP11.27□□□□□ -0.61
CDH1-205ENST00000562836 MYLK4Q86YV6 388 aaPredicted RBP11.27□□□□□ -0.61
CDH1-205ENST00000562836 MICAL1Q8TDZ2 1067 aa11.27□□□□□ -0.61
CDH1-205ENST00000562836 KIF2CQ99661 725 aa11.27□□□□□ -0.61
CDH1-205ENST00000562836 ERCC3P19447 782 aa11.27□□□□□ -0.61
CDH1-205ENST00000562836 SYT10Q6XYQ8 523 aa11.27□□□□□ -0.61
CDH1-205ENST00000562836 ARHGEF10LQ9HCE6 1279 aa11.27□□□□□ -0.61
CDH1-205ENST00000562836 CFAP65Q6ZU64 1925 aaKnown RBP11.27□□□□□ -0.61
CDH1-205ENST00000562836 NEBLO76041 1014 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 LZTS2Q9BRK4 669 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 ZNF446Q9NWS9 450 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.26□□□□□ -0.61
CDH1-205ENST00000562836 A0A1B0GUL7 405 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 PPP1R15AO75807 674 aaPredicted RBP11.26□□□□□ -0.61
CDH1-205ENST00000562836 FCHSD2O94868 740 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 SETSIPP0DME0 302 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 MAGEA8P43361 318 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 RASA3Q14644 834 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 NFATC2IPQ8NCF5 419 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 PRIMPOLQ96LW4 560 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 LCMT1Q9UIC8 334 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 SYNPO2Q9UMS6 1093 aa11.26□□□□□ -0.61
CDH1-205ENST00000562836 NASPP49321 788 aaPredicted RBP11.25□□□□□ -0.61
CDH1-205ENST00000562836 ADCY2Q08462 1091 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 HS1BP3Q53T59 392 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 HSP90AB2PQ58FF8 381 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 OGFOD1Q8N543 542 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 RABL2BQ9UNT1 228 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 GOLGA6L22H0YM25 854 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 HSPA5P11021 654 aaKnown RBP11.25□□□□□ -0.61
CDH1-205ENST00000562836 INF2Q27J81 1249 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 TAF4BQ92750 862 aa11.25□□□□□ -0.61
CDH1-205ENST00000562836 DHX57Q6P158 1386 aaKnown RBP11.24□□□□□ -0.61
CDH1-205ENST00000562836 IFT88Q13099 833 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 TBC1D25Q3MII6 688 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 TTC31Q49AM3 519 aaPredicted RBP11.24□□□□□ -0.61
CDH1-205ENST00000562836 ZNF662Q6ZS27 426 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 ZKSCAN5Q9Y2L8 839 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 RAD54L2Q9Y4B4 1467 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 IRX1P78414 480 aaPredicted RBP11.24□□□□□ -0.61
CDH1-205ENST00000562836 WWC2Q6AWC2 1192 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 FAXDC2Q96IV6 333 aa11.24□□□□□ -0.61
CDH1-205ENST00000562836 STK10O94804 968 aaKnown RBP11.23□□□□□ -0.61
CDH1-205ENST00000562836 PACS2Q86VP3 889 aa11.23□□□□□ -0.61
CDH1-205ENST00000562836 SKAP1Q86WV1 359 aa11.23□□□□□ -0.61
CDH1-205ENST00000562836 UHMK1Q8TAS1 419 aaKnown RBP11.23□□□□□ -0.61
CDH1-205ENST00000562836 SLX1AQ9BQ83 275 aa11.23□□□□□ -0.61
CDH1-205ENST00000562836 BLOC1S6Q9UL45 172 aa11.23□□□□□ -0.61
CDH1-205ENST00000562836 NEFHP12036 1026 aa11.23□□□□□ -0.61
CDH1-205ENST00000562836 ABL2P42684 1182 aa11.22□□□□□ -0.61
CDH1-205ENST00000562836 TRAF1Q13077 416 aa11.22□□□□□ -0.61
CDH1-205ENST00000562836 IRF2BPLQ9H1B7 796 aa11.22□□□□□ -0.61
CDH1-205ENST00000562836 PRDM2Q13029 1718 aa11.22□□□□□ -0.61
CDH1-205ENST00000562836 SYNJ1O43426 1573 aa11.22□□□□□ -0.61
CDH1-205ENST00000562836 SPAG9O60271 1321 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms