RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 CD163L1Q9NR16 1453 aa22.96■■□□□ 1.27
SNX1-213ENST00000561026 PUS7Q96PZ0 661 aaKnown RBP22.95■■□□□ 1.26
SNX1-213ENST00000561026 C11orf95C9JLR9 678 aaPredicted RBP22.94■■□□□ 1.26
SNX1-213ENST00000561026 PARP4Q9UKK3 1724 aaKnown RBP22.94■■□□□ 1.26
SNX1-213ENST00000561026 USP31Q70CQ4 1352 aa22.93■■□□□ 1.26
SNX1-213ENST00000561026 PARD3Q8TEW0 1356 aa22.93■■□□□ 1.26
SNX1-213ENST00000561026 HDGFL2Q7Z4V5 671 aaPredicted RBP22.93■■□□□ 1.26
SNX1-213ENST00000561026 MON2Q7Z3U7 1717 aa22.93■■□□□ 1.26
SNX1-213ENST00000561026 NFAT5O94916 1531 aa22.92■■□□□ 1.26
SNX1-213ENST00000561026 DDB1Q16531 1140 aa22.92■■□□□ 1.26
SNX1-213ENST00000561026 NME9Q86XW9 330 aa22.92■■□□□ 1.26
SNX1-213ENST00000561026 CSB-PGBD3P0DP91 1061 aa22.91■■□□□ 1.26
SNX1-213ENST00000561026 R3HDM1Q15032 1099 aaKnown RBP22.91■■□□□ 1.26
SNX1-213ENST00000561026 TESK2Q96S53 571 aa22.91■■□□□ 1.26
SNX1-213ENST00000561026 TERF2IPQ9NYB0 399 aa22.91■■□□□ 1.26
SNX1-213ENST00000561026 ST20-MTHFSA0A0A6YYL1 179 aa22.9■■□□□ 1.26
SNX1-213ENST00000561026 CDCA7Q9BWT1 371 aaPredicted RBP22.9■■□□□ 1.26
SNX1-213ENST00000561026 CARD10Q9BWT7 1032 aa22.9■■□□□ 1.26
SNX1-213ENST00000561026 OVOS2A0A0G2JMS6 1433 aa22.88■■□□□ 1.25
SNX1-213ENST00000561026 OVOS2A0A0J9YW53 1432 aa22.88■■□□□ 1.25
SNX1-213ENST00000561026 OVOS2Q6IE36 1432 aa22.88■■□□□ 1.25
SNX1-213ENST00000561026 EDC4Q6P2E9 1401 aaKnown RBP22.88■■□□□ 1.25
SNX1-213ENST00000561026 SLC24A1O60721 1099 aa22.88■■□□□ 1.25
SNX1-213ENST00000561026 A0A1W2PP64 1363 aa22.87■■□□□ 1.25
SNX1-213ENST00000561026 ABCC6O95255 1503 aa22.86■■□□□ 1.25
SNX1-213ENST00000561026 LRRC37A3O60309 1634 aa22.86■■□□□ 1.25
SNX1-213ENST00000561026 LRP5O75197 1615 aa22.86■■□□□ 1.25
SNX1-213ENST00000561026 RGPD5Q99666 1765 aa22.86■■□□□ 1.25
SNX1-213ENST00000561026 MARCH10Q8NA82 808 aaPredicted RBP22.85■■□□□ 1.25
SNX1-213ENST00000561026 PEAK1Q9H792 1746 aa22.84■■□□□ 1.25
SNX1-213ENST00000561026 USP54Q70EL1 1684 aa22.84■■□□□ 1.25
SNX1-213ENST00000561026 NINLQ9Y2I6 1382 aa22.84■■□□□ 1.25
SNX1-213ENST00000561026 CCDC7Q96M83 1385 aa22.83■■□□□ 1.25
SNX1-213ENST00000561026 EXOC5O00471 708 aa22.82■■□□□ 1.24
SNX1-213ENST00000561026 ERBB3P21860 1342 aa22.82■■□□□ 1.24
SNX1-213ENST00000561026 NBPF14Q5TI25 921 aa22.81■■□□□ 1.24
SNX1-213ENST00000561026 BCL11BQ9C0K0 894 aaPredicted RBP22.81■■□□□ 1.24
SNX1-213ENST00000561026 BCL9O00512 1426 aa22.81■■□□□ 1.24
SNX1-213ENST00000561026 WNK3Q9BYP7 1800 aa22.8■■□□□ 1.24
SNX1-213ENST00000561026 PLSCR1O15162 318 aa22.8■■□□□ 1.24
SNX1-213ENST00000561026 RREB1Q92766 1687 aa22.8■■□□□ 1.24
SNX1-213ENST00000561026 PTF1AQ7RTS3 328 aa22.79■■□□□ 1.24
SNX1-213ENST00000561026 NLRP2Q9NX02 1062 aa22.79■■□□□ 1.24
SNX1-213ENST00000561026 ANKRD24Q8TF21 1146 aa22.77■■□□□ 1.24
SNX1-213ENST00000561026 USP47Q96K76 1375 aa22.77■■□□□ 1.24
SNX1-213ENST00000561026 NUP188Q5SRE5 1749 aa22.77■■□□□ 1.24
SNX1-213ENST00000561026 SBF2Q86WG5 1849 aa22.76■■□□□ 1.23
SNX1-213ENST00000561026 TMF1P82094 1093 aa22.76■■□□□ 1.23
SNX1-213ENST00000561026 LTN1O94822 1766 aa22.75■■□□□ 1.23
SNX1-213ENST00000561026 IP6K1Q92551 441 aa22.75■■□□□ 1.23
SNX1-213ENST00000561026 COG3Q96JB2 828 aa22.75■■□□□ 1.23
SNX1-213ENST00000561026 IL2RBP14784 551 aa22.74■■□□□ 1.23
SNX1-213ENST00000561026 ANKRD36BQ8N2N9 1353 aa22.73■■□□□ 1.23
SNX1-213ENST00000561026 TNS2Q63HR2 1409 aa22.73■■□□□ 1.23
SNX1-213ENST00000561026 TIMELESSQ9UNS1 1208 aa22.73■■□□□ 1.23
SNX1-213ENST00000561026 PROM2Q8N271 834 aa22.71■■□□□ 1.23
SNX1-213ENST00000561026 RGPD3A6NKT7 1758 aaPredicted RBP22.71■■□□□ 1.23
SNX1-213ENST00000561026 RGPD4Q7Z3J3 1758 aa22.71■■□□□ 1.23
SNX1-213ENST00000561026 MAP3K19Q56UN5 1328 aa22.7■■□□□ 1.22
SNX1-213ENST00000561026 CDCA8Q53HL2 280 aa22.69■■□□□ 1.22
SNX1-213ENST00000561026 KCNQ2O43526 872 aa22.68■■□□□ 1.22
SNX1-213ENST00000561026 FBLN1P23142 703 aa22.68■■□□□ 1.22
SNX1-213ENST00000561026 LTV1Q96GA3 475 aaPredicted RBP22.68■■□□□ 1.22
SNX1-213ENST00000561026 CLSPNQ9HAW4 1339 aa22.67■■□□□ 1.22
SNX1-213ENST00000561026 FYB1O15117 783 aa22.67■■□□□ 1.22
SNX1-213ENST00000561026 HOXC9P31274 260 aa22.66■■□□□ 1.22
SNX1-213ENST00000561026 AMPHP49418 695 aa22.66■■□□□ 1.22
SNX1-213ENST00000561026 PCGF6Q9BYE7 350 aa22.66■■□□□ 1.22
SNX1-213ENST00000561026 ANO8Q9HCE9 1232 aaPredicted RBP22.66■■□□□ 1.22
SNX1-213ENST00000561026 TXNRD1Q16881 649 aa22.65■■□□□ 1.22
SNX1-213ENST00000561026 ACSBG1Q96GR2 724 aa22.64■■□□□ 1.22
SNX1-213ENST00000561026 GGNBP2Q9H3C7 697 aa22.64■■□□□ 1.22
SNX1-213ENST00000561026 SPON1Q9HCB6 807 aa22.64■■□□□ 1.22
SNX1-213ENST00000561026 RRS1Q15050 365 aaKnown RBP22.62■■□□□ 1.21
SNX1-213ENST00000561026 DDX54Q8TDD1 881 aaKnown RBP22.6■■□□□ 1.21
SNX1-213ENST00000561026 RTL1A6NKG5 1358 aa22.6■■□□□ 1.21
SNX1-213ENST00000561026 NHSQ6T4R5 1651 aa22.59■■□□□ 1.21
SNX1-213ENST00000561026 FAM208AQ9UK61 1670 aaKnown RBP22.59■■□□□ 1.21
SNX1-213ENST00000561026 CARD14Q9BXL6 1004 aa22.59■■□□□ 1.21
SNX1-213ENST00000561026 PDGFDQ9GZP0 370 aaPredicted RBP22.58■■□□□ 1.21
SNX1-213ENST00000561026 STK32BQ9NY57 414 aa22.58■■□□□ 1.21
SNX1-213ENST00000561026 SLC15A2Q16348 729 aa22.57■■□□□ 1.2
SNX1-213ENST00000561026 NBPF6Q5VWK0 638 aa22.56■■□□□ 1.2
SNX1-213ENST00000561026 NBPF4Q96M43 638 aa22.56■■□□□ 1.2
SNX1-213ENST00000561026 PPP1R1BQ9UD71 204 aaPredicted RBP22.56■■□□□ 1.2
SNX1-213ENST00000561026 ZCRB1Q8TBF4 217 aaKnown RBP22.54■■□□□ 1.2
SNX1-213ENST00000561026 KAT6BQ8WYB5 2073 aa22.53■■□□□ 1.2
SNX1-213ENST00000561026 CASZ1Q86V15 1759 aa22.53■■□□□ 1.2
SNX1-213ENST00000561026 ZBTB7AO95365 584 aa22.52■■□□□ 1.2
SNX1-213ENST00000561026 HSP90AB2PQ58FF8 381 aa22.52■■□□□ 1.2
SNX1-213ENST00000561026 INSRP06213 1382 aa22.52■■□□□ 1.2
SNX1-213ENST00000561026 NSD3Q9BZ95 1437 aa22.52■■□□□ 1.2
SNX1-213ENST00000561026 MEGF6O75095 1541 aa22.51■■□□□ 1.19
SNX1-213ENST00000561026 BTAF1O14981 1849 aa22.51■■□□□ 1.19
SNX1-213ENST00000561026 KIF24Q5T7B8 1368 aa22.51■■□□□ 1.19
SNX1-213ENST00000561026 SMG6Q86US8 1419 aaKnown RBP22.51■■□□□ 1.19
SNX1-213ENST00000561026 RGPD2P0DJD1 1756 aa22.51■■□□□ 1.19
SNX1-213ENST00000561026 PRIM1P49642 420 aaKnown RBP22.5■■□□□ 1.19
SNX1-213ENST00000561026 USHBP1Q8N6Y0 703 aa22.5■■□□□ 1.19
SNX1-213ENST00000561026 CGNL1Q0VF96 1302 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms