RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ZNF428Q96B54 188 aa13.88□□□□□ -0.19
LDLR-208ENST00000558518 IGSF3O75054 1194 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 PLEKHM2Q8IWE5 1019 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 MBIPQ9NS73 344 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 SDSP20132 328 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 EXOC6BQ9Y2D4 811 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 DDIT3P35638 169 aa13.87□□□□□ -0.19
LDLR-208ENST00000558518 PPIP5K1Q6PFW1 1433 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 CLASP1Q7Z460 1538 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 VAMP4O75379 141 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 PLEKHF1Q96S99 279 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 F6X3S4 739 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 CBX1P83916 185 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 MADDQ8WXG6 1647 aa13.86□□□□□ -0.19
LDLR-208ENST00000558518 STAC3Q96MF2 364 aa13.85□□□□□ -0.19
LDLR-208ENST00000558518 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.85□□□□□ -0.192e-11■□□□□ 9.3
LDLR-208ENST00000558518 CD109Q6YHK3 1445 aa13.85□□□□□ -0.19
LDLR-208ENST00000558518 USP25Q9UHP3 1055 aa13.85□□□□□ -0.19
LDLR-208ENST00000558518 CT47B1P0C2W7 299 aaPredicted RBP13.85□□□□□ -0.19
LDLR-208ENST00000558518 MRPL50Q8N5N7 158 aaKnown RBP13.85□□□□□ -0.19
LDLR-208ENST00000558518 TTC12Q9H892 705 aaPredicted RBP13.85□□□□□ -0.19
LDLR-208ENST00000558518 C14orf93Q9H972 538 aaKnown RBP13.85□□□□□ -0.19
LDLR-208ENST00000558518 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.84□□□□□ -0.19
LDLR-208ENST00000558518 PPP1R9BQ96SB3 815 aa13.84□□□□□ -0.19
LDLR-208ENST00000558518 SPC24Q8NBT2 197 aa13.84□□□□□ -0.19
LDLR-208ENST00000558518 DDX54Q8TDD1 881 aaKnown RBP13.84□□□□□ -0.19
LDLR-208ENST00000558518 MCM10Q7L590 875 aa13.84□□□□□ -0.19
LDLR-208ENST00000558518 USP26Q9BXU7 913 aa13.84□□□□□ -0.19
LDLR-208ENST00000558518 A0A1W2PP64 1363 aa13.84□□□□□ -0.19
LDLR-208ENST00000558518 ZNF518AQ6AHZ1 1483 aa13.83□□□□□ -0.19
LDLR-208ENST00000558518 TTC22Q5TAA0 569 aa13.83□□□□□ -0.19
LDLR-208ENST00000558518 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.19
LDLR-208ENST00000558518 KIAA2012Q0VF49 1180 aa13.83□□□□□ -0.2
LDLR-208ENST00000558518 WAPLQ7Z5K2 1190 aa13.83□□□□□ -0.2
LDLR-208ENST00000558518 MEIS3Q99687 375 aa13.83□□□□□ -0.2
LDLR-208ENST00000558518 CHMP4BQ9H444 224 aaKnown RBP13.83□□□□□ -0.2
LDLR-208ENST00000558518 ZKSCAN5Q9Y2L8 839 aa13.83□□□□□ -0.2
LDLR-208ENST00000558518 VIRMAQ69YN4 1812 aaKnown RBP13.82□□□□□ -0.2
LDLR-208ENST00000558518 SPDYE4A6NLX3 237 aa13.82□□□□□ -0.2
LDLR-208ENST00000558518 GNAI1P63096 354 aa13.82□□□□□ -0.2
LDLR-208ENST00000558518 CLTCL1P53675 1640 aa13.82□□□□□ -0.2
LDLR-208ENST00000558518 CDK19Q9BWU1 502 aa13.82□□□□□ -0.2
LDLR-208ENST00000558518 CCDC39Q9UFE4 941 aa13.82□□□□□ -0.2
LDLR-208ENST00000558518 VGFO15240 615 aaPredicted RBP13.81□□□□□ -0.2
LDLR-208ENST00000558518 FIBPO43427 364 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 GADD45BO75293 160 aaPredicted RBP13.81□□□□□ -0.2
LDLR-208ENST00000558518 REC8O95072 547 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 API5Q9BZZ5 524 aaKnown RBP13.81□□□□□ -0.2
LDLR-208ENST00000558518 TSPY26PQ9H489 355 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 NOL7Q9UMY1 257 aaKnown RBP13.81□□□□□ -0.2
LDLR-208ENST00000558518 IQGAP3Q86VI3 1631 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 ABCC11Q96J66 1382 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 ALDH1L2Q3SY69 923 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 TMX3Q96JJ7 454 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 NCKAP5LQ9HCH0 1330 aa13.81□□□□□ -0.2
LDLR-208ENST00000558518 NFE2L2Q16236 605 aa13.8□□□□□ -0.2
LDLR-208ENST00000558518 NME9Q86XW9 330 aa13.8□□□□□ -0.2
LDLR-208ENST00000558518 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.8□□□□□ -0.2
LDLR-208ENST00000558518 PREX2Q70Z35 1606 aa13.8□□□□□ -0.2
LDLR-208ENST00000558518 SLC4A2P04920 1241 aa13.8□□□□□ -0.2
LDLR-208ENST00000558518 LRSAM1Q6UWE0 723 aa13.8□□□□□ -0.2
LDLR-208ENST00000558518 IL1RAPL2Q9NP60 686 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 PLCH2O75038 1416 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 UNC13BO14795 1591 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 ZDHHC9Q9Y397 364 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 MYOM1P52179 1685 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 ERC2O15083 957 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 FCHSD2O94868 740 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 HCLS1P14317 486 aaPredicted RBP13.79□□□□□ -0.2
LDLR-208ENST00000558518 ZNF445P59923 1031 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 MLECQ14165 292 aa13.79□□□□□ -0.2
LDLR-208ENST00000558518 TAOK2Q9UL54 1235 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 ANKRD36BQ8N2N9 1353 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 IQGAP1P46940 1657 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 AEBP1Q8IUX7 1158 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 PODXL2Q9NZ53 605 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.78□□□□□ -0.2
LDLR-208ENST00000558518 POLKQ9UBT6 870 aa13.78□□□□□ -0.2
LDLR-208ENST00000558518 LAMC1P11047 1609 aa13.77□□□□□ -0.2
LDLR-208ENST00000558518 CSPP1Q1MSJ5 1256 aa13.77□□□□□ -0.2
LDLR-208ENST00000558518 PALD1Q9ULE6 856 aa13.77□□□□□ -0.2
LDLR-208ENST00000558518 RAPGEF3O95398 923 aa13.77□□□□□ -0.21
LDLR-208ENST00000558518 CEP152O94986 1710 aa13.77□□□□□ -0.21
LDLR-208ENST00000558518 SULT6B1Q6IMI4 303 aa13.77□□□□□ -0.21
LDLR-208ENST00000558518 DRC7Q8IY82 874 aa13.77□□□□□ -0.21
LDLR-208ENST00000558518 IQSEC2Q5JU85 1478 aa13.76□□□□□ -0.21
LDLR-208ENST00000558518 MCCP23508 829 aa13.76□□□□□ -0.21
LDLR-208ENST00000558518 SASS6Q6UVJ0 657 aa13.76□□□□□ -0.21
LDLR-208ENST00000558518 NCOA3Q9Y6Q9 1424 aa13.76□□□□□ -0.21
LDLR-208ENST00000558518 IDI1Q13907 227 aa13.76□□□□□ -0.21
LDLR-208ENST00000558518 CWC22Q9HCG8 908 aaKnown RBP13.76□□□□□ -0.21
LDLR-208ENST00000558518 CPA1P15085 419 aa13.75□□□□□ -0.21
LDLR-208ENST00000558518 SYAP1Q96A49 352 aaPredicted RBP13.75□□□□□ -0.21
LDLR-208ENST00000558518 DCTPP1Q9H773 170 aa13.75□□□□□ -0.21
LDLR-208ENST00000558518 RNF17Q9BXT8 1623 aaKnown RBP13.75□□□□□ -0.21
LDLR-208ENST00000558518 USP48Q86UV5 1035 aa13.75□□□□□ -0.21
LDLR-208ENST00000558518 NUTM1Q86Y26 1132 aa13.75□□□□□ -0.21
LDLR-208ENST00000558518 CNPY2Q9Y2B0 182 aa13.75□□□□□ -0.21
LDLR-208ENST00000558518 ZMYM3Q14202 1370 aa13.74□□□□□ -0.21
LDLR-208ENST00000558518 ADCY5O95622 1261 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms