RNA–Protein interactions for RNA: ENST00000550471.1

GCN1-207, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-207ENST00000550471 CDCA8Q53HL2 280 aa28.01■■■□□ 2.07
GCN1-207ENST00000550471 SLC12A5Q9H2X9 1139 aa28.01■■■□□ 2.07
GCN1-207ENST00000550471 TOM1L2Q6ZVM7 507 aa28■■■□□ 2.07
GCN1-207ENST00000550471 CD163L1Q9NR16 1453 aa28■■■□□ 2.07
GCN1-207ENST00000550471 TMF1P82094 1093 aa27.99■■■□□ 2.07
GCN1-207ENST00000550471 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.99■■■□□ 2.071e-7■■□□□ 11.5
GCN1-207ENST00000550471 USP54Q70EL1 1684 aa27.97■■■□□ 2.07
GCN1-207ENST00000550471 PARD3Q8TEW0 1356 aa27.96■■■□□ 2.07
GCN1-207ENST00000550471 COL18A1P39060 1754 aa27.96■■■□□ 2.07
GCN1-207ENST00000550471 NFAT5O94916 1531 aa27.95■■■□□ 2.06
GCN1-207ENST00000550471 A0A1W2PP64 1363 aa27.95■■■□□ 2.06
GCN1-207ENST00000550471 USP47Q96K76 1375 aa27.95■■■□□ 2.06
GCN1-207ENST00000550471 CSB-PGBD3P0DP91 1061 aa27.94■■■□□ 2.06
GCN1-207ENST00000550471 CARD10Q9BWT7 1032 aa27.94■■■□□ 2.06
GCN1-207ENST00000550471 PARP4Q9UKK3 1724 aaKnown RBP27.94■■■□□ 2.06
GCN1-207ENST00000550471 FAM182BQ5T319 152 aa27.93■■■□□ 2.06
GCN1-207ENST00000550471 AXIN2Q9Y2T1 843 aa27.93■■■□□ 2.06
GCN1-207ENST00000550471 CCDC7Q96M83 1385 aa27.92■■■□□ 2.06
GCN1-207ENST00000550471 SOX12O15370 315 aa27.92■■■□□ 2.06
GCN1-207ENST00000550471 NME9Q86XW9 330 aa27.92■■■□□ 2.06
GCN1-207ENST00000550471 DDB1Q16531 1140 aa27.91■■■□□ 2.06
GCN1-207ENST00000550471 PCGF6Q9BYE7 350 aa27.9■■■□□ 2.06
GCN1-207ENST00000550471 ANKRD36BQ8N2N9 1353 aa27.89■■■□□ 2.06
GCN1-207ENST00000550471 TRIM37O94972 964 aa27.89■■■□□ 2.06
GCN1-207ENST00000550471 OVOS2A0A0G2JMS6 1433 aa27.89■■■□□ 2.06
GCN1-207ENST00000550471 OVOS2A0A0J9YW53 1432 aa27.89■■■□□ 2.06
GCN1-207ENST00000550471 OVOS2Q6IE36 1432 aa27.89■■■□□ 2.06
GCN1-207ENST00000550471 EN1Q05925 392 aaPredicted RBP27.88■■■□□ 2.05
GCN1-207ENST00000550471 APBA3O96018 575 aa27.86■■■□□ 2.05
GCN1-207ENST00000550471 COG3Q96JB2 828 aa27.86■■■□□ 2.05
GCN1-207ENST00000550471 TNS1Q9HBL0 1735 aaKnown RBP27.85■■■□□ 2.05
GCN1-207ENST00000550471 CAMKK2Q96RR4 588 aa27.84■■■□□ 2.05
GCN1-207ENST00000550471 ERBB3P21860 1342 aa27.84■■■□□ 2.05
GCN1-207ENST00000550471 BCL9O00512 1426 aa27.84■■■□□ 2.05
GCN1-207ENST00000550471 EXOC5O00471 708 aa27.82■■■□□ 2.04
GCN1-207ENST00000550471 LRRC37A3O60309 1634 aa27.79■■■□□ 2.04
GCN1-207ENST00000550471 EZH2Q15910 746 aaKnown RBP27.79■■■□□ 2.04
GCN1-207ENST00000550471 IP6K1Q92551 441 aa27.78■■■□□ 2.04
GCN1-207ENST00000550471 WNK3Q9BYP7 1800 aa27.77■■■□□ 2.04
GCN1-207ENST00000550471 NBPF14Q5TI25 921 aa27.77■■■□□ 2.04
GCN1-207ENST00000550471 NLRP2Q9NX02 1062 aa27.77■■■□□ 2.04
GCN1-207ENST00000550471 RGPD5Q99666 1765 aa27.77■■■□□ 2.04
GCN1-207ENST00000550471 ANKRD24Q8TF21 1146 aa27.76■■■□□ 2.03
GCN1-207ENST00000550471 BCL11BQ9C0K0 894 aaPredicted RBP27.76■■■□□ 2.03
GCN1-207ENST00000550471 LTN1O94822 1766 aa27.76■■■□□ 2.03
GCN1-207ENST00000550471 PLSCR1O15162 318 aa27.75■■■□□ 2.03
GCN1-207ENST00000550471 IL2RBP14784 551 aa27.74■■■□□ 2.03
GCN1-207ENST00000550471 CCER1Q8TC90 406 aaPredicted RBP27.74■■■□□ 2.03
GCN1-207ENST00000550471 PEAK1Q9H792 1746 aa27.74■■■□□ 2.03
GCN1-207ENST00000550471 MARCH10Q8NA82 808 aaPredicted RBP27.72■■■□□ 2.03
GCN1-207ENST00000550471 TNS2Q63HR2 1409 aa27.72■■■□□ 2.03
GCN1-207ENST00000550471 RTL1A6NKG5 1358 aa27.72■■■□□ 2.03
GCN1-207ENST00000550471 AMPHP49418 695 aa27.71■■■□□ 2.03
GCN1-207ENST00000550471 FYB1O15117 783 aa27.7■■■□□ 2.02
GCN1-207ENST00000550471 FAM208AQ9UK61 1670 aaKnown RBP27.69■■■□□ 2.02
GCN1-207ENST00000550471 MAP3K19Q56UN5 1328 aa27.68■■■□□ 2.02
GCN1-207ENST00000550471 RGPD3A6NKT7 1758 aaPredicted RBP27.68■■■□□ 2.02
GCN1-207ENST00000550471 RGPD4Q7Z3J3 1758 aa27.68■■■□□ 2.02
GCN1-207ENST00000550471 LRP5O75197 1615 aa27.68■■■□□ 2.02
GCN1-207ENST00000550471 PSDA5PKW4 1024 aaPredicted RBP27.68■■■□□ 2.02
GCN1-207ENST00000550471 KIF24Q5T7B8 1368 aa27.68■■■□□ 2.02
GCN1-207ENST00000550471 R3HDM1Q15032 1099 aaKnown RBP27.67■■■□□ 2.02
GCN1-207ENST00000550471 RREB1Q92766 1687 aa27.66■■■□□ 2.02
GCN1-207ENST00000550471 HOXC9P31274 260 aa27.66■■■□□ 2.02
GCN1-207ENST00000550471 EIF4G2P78344 907 aaKnown RBP eCLIP27.66■■■□□ 2.02
GCN1-207ENST00000550471 SBF2Q86WG5 1849 aa27.64■■■□□ 2.01
GCN1-207ENST00000550471 GGNBP2Q9H3C7 697 aa27.63■■■□□ 2.01
GCN1-207ENST00000550471 SMG6Q86US8 1419 aaKnown RBP27.63■■■□□ 2.01
GCN1-207ENST00000550471 CGNL1Q0VF96 1302 aa27.6■■■□□ 2.01
GCN1-207ENST00000550471 LTV1Q96GA3 475 aaPredicted RBP27.59■■■□□ 2.01
GCN1-207ENST00000550471 NUP188Q5SRE5 1749 aa27.58■■■□□ 2.01
GCN1-207ENST00000550471 NSD3Q9BZ95 1437 aa27.58■■■□□ 2
GCN1-207ENST00000550471 FLT4P35916 1363 aa27.57■■■□□ 2
GCN1-207ENST00000550471 KIF20BQ96Q89 1820 aa27.56■■■□□ 2
GCN1-207ENST00000550471 CARD14Q9BXL6 1004 aa27.56■■■□□ 2
GCN1-207ENST00000550471 INSRP06213 1382 aa27.56■■■□□ 2
GCN1-207ENST00000550471 MYOM1P52179 1685 aa27.55■■■□□ 2
GCN1-207ENST00000550471 RRS1Q15050 365 aaKnown RBP27.54■■■□□ 2
GCN1-207ENST00000550471 NHSQ6T4R5 1651 aa27.52■■■□□ 2
GCN1-207ENST00000550471 HSPA5P11021 654 aaKnown RBP27.51■■□□□ 1.99
GCN1-207ENST00000550471 SRCAPQ6ZRS2 3230 aa27.5■■□□□ 1.99
GCN1-207ENST00000550471 FBLN1P23142 703 aa27.5■■□□□ 1.99
GCN1-207ENST00000550471 TXNRD1Q16881 649 aa27.5■■□□□ 1.99
GCN1-207ENST00000550471 ZCRB1Q8TBF4 217 aaKnown RBP27.5■■□□□ 1.99
GCN1-207ENST00000550471 RAPGEF4Q8WZA2 1011 aa27.5■■□□□ 1.99
GCN1-207ENST00000550471 PTF1AQ7RTS3 328 aa27.48■■□□□ 1.99
GCN1-207ENST00000550471 DDX54Q8TDD1 881 aaKnown RBP27.48■■□□□ 1.99
GCN1-207ENST00000550471 KCNQ2O43526 872 aa27.47■■□□□ 1.99
GCN1-207ENST00000550471 HMGB2P26583 209 aaKnown RBP27.47■■□□□ 1.99
GCN1-207ENST00000550471 PROM2Q8N271 834 aa27.47■■□□□ 1.99
GCN1-207ENST00000550471 SPON1Q9HCB6 807 aa27.47■■□□□ 1.99
GCN1-207ENST00000550471 STK32BQ9NY57 414 aa27.47■■□□□ 1.99
GCN1-207ENST00000550471 TATP17735 454 aaPredicted RBP27.46■■□□□ 1.99
GCN1-207ENST00000550471 NBPF6Q5VWK0 638 aa27.46■■□□□ 1.99
GCN1-207ENST00000550471 ACSBG1Q96GR2 724 aa27.46■■□□□ 1.99
GCN1-207ENST00000550471 NBPF4Q96M43 638 aa27.46■■□□□ 1.99
GCN1-207ENST00000550471 POLR3GLQ9BT43 218 aa27.46■■□□□ 1.99
GCN1-207ENST00000550471 HSP90AB2PQ58FF8 381 aa27.45■■□□□ 1.98
GCN1-207ENST00000550471 NSD2O96028 1365 aa27.44■■□□□ 1.98
GCN1-207ENST00000550471 WASHC2AQ641Q2 1341 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms