RNA–Protein interactions for RNA: ENST00000545425.2

FOXA1-202, Transcript of forkhead box A1, humanhuman

TSL 2

Gene FOXA1, Length 1,806 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-202ENST00000545425 UPF2Q9HAU5 1272 aaKnown RBP29.59■■■□□ 2.33
FOXA1-202ENST00000545425 KIF16BQ96L93 1317 aa29.59■■■□□ 2.33
FOXA1-202ENST00000545425 IPO8O15397 1037 aaKnown RBP29.59■■■□□ 2.33
FOXA1-202ENST00000545425 CALD1Q05682 793 aaKnown RBP29.59■■■□□ 2.33
FOXA1-202ENST00000545425 ALDH1L2Q3SY69 923 aa29.59■■■□□ 2.33
FOXA1-202ENST00000545425 PCDHB15Q9Y5E8 787 aa29.59■■■□□ 2.33
FOXA1-202ENST00000545425 HDAC1Q13547 482 aaPredicted RBP29.58■■■□□ 2.33
FOXA1-202ENST00000545425 SLAIN2Q9P270 581 aa29.57■■■□□ 2.32
FOXA1-202ENST00000545425 KNDC1Q76NI1 1749 aa29.57■■■□□ 2.32
FOXA1-202ENST00000545425 BRPF1P55201 1214 aaPredicted RBP29.57■■■□□ 2.32
FOXA1-202ENST00000545425 CADPS2Q86UW7 1296 aa29.57■■■□□ 2.32
FOXA1-202ENST00000545425 SMC4Q9NTJ3 1288 aa29.56■■■□□ 2.32
FOXA1-202ENST00000545425 EDC4Q6P2E9 1401 aaKnown RBP29.55■■■□□ 2.32
FOXA1-202ENST00000545425 CHMP4BQ9H444 224 aaKnown RBP29.55■■■□□ 2.32
FOXA1-202ENST00000545425 XRN1Q8IZH2 1706 aaKnown RBP29.55■■■□□ 2.32
FOXA1-202ENST00000545425 ATF3P18847 181 aa29.55■■■□□ 2.32
FOXA1-202ENST00000545425 USP19O94966 1318 aa29.54■■■□□ 2.32
FOXA1-202ENST00000545425 EXOSC9Q06265 439 aaKnown RBP29.54■■■□□ 2.32
FOXA1-202ENST00000545425 ATF7IPQ6VMQ6 1270 aa29.54■■■□□ 2.32
FOXA1-202ENST00000545425 PDZRN3Q9UPQ7 1066 aa29.53■■■□□ 2.32
FOXA1-202ENST00000545425 AATKQ6ZMQ8 1374 aa29.53■■■□□ 2.32
FOXA1-202ENST00000545425 RIPK4P57078 832 aa29.52■■■□□ 2.32
FOXA1-202ENST00000545425 CABP1Q9NZU7 370 aa29.52■■■□□ 2.32
FOXA1-202ENST00000545425 NFKBIBQ15653 356 aa29.52■■■□□ 2.32
FOXA1-202ENST00000545425 CPSF1Q10570 1443 aaKnown RBP29.52■■■□□ 2.32
FOXA1-202ENST00000545425 CDK12Q9NYV4 1490 aaPredicted RBP29.51■■■□□ 2.31
FOXA1-202ENST00000545425 TECPR2O15040 1411 aa29.5■■■□□ 2.31
FOXA1-202ENST00000545425 BCL2L13Q9BXK5 485 aa29.49■■■□□ 2.31
FOXA1-202ENST00000545425 DCCP43146 1447 aa29.48■■■□□ 2.31
FOXA1-202ENST00000545425 SSH1Q8WYL5 1049 aa29.48■■■□□ 2.31
FOXA1-202ENST00000545425 PTCH1Q13635 1447 aa29.47■■■□□ 2.31
FOXA1-202ENST00000545425 TRIM27P14373 513 aa29.47■■■□□ 2.31
FOXA1-202ENST00000545425 TSR2Q969E8 191 aaKnown RBP29.47■■■□□ 2.31
FOXA1-202ENST00000545425 RSPH6AQ9H0K4 717 aa29.46■■■□□ 2.31
FOXA1-202ENST00000545425 POLKQ9UBT6 870 aa29.44■■■□□ 2.3
FOXA1-202ENST00000545425 MON2Q7Z3U7 1717 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 LMOD3Q0VAK6 560 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 ARHGAP45Q92619 1136 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 TBC1D32Q96NH3 1257 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 TNNQ9UQP3 1299 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 ROBO2Q9HCK4 1378 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.43■■■□□ 2.3
FOXA1-202ENST00000545425 WASLO00401 505 aaPredicted RBP29.43■■■□□ 2.3
FOXA1-202ENST00000545425 NFE2L2Q16236 605 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 SMC5Q8IY18 1101 aa29.43■■■□□ 2.3
FOXA1-202ENST00000545425 ADGRL3Q9HAR2 1447 aa29.42■■■□□ 2.3
FOXA1-202ENST00000545425 ROBO1Q9Y6N7 1651 aa29.41■■■□□ 2.3
FOXA1-202ENST00000545425 MAP2P11137 1827 aaKnown RBP29.4■■■□□ 2.3
FOXA1-202ENST00000545425 GSE1Q14687 1217 aa29.4■■■□□ 2.3
FOXA1-202ENST00000545425 ZBTB40Q9NUA8 1239 aa29.39■■■□□ 2.3
FOXA1-202ENST00000545425 NOB1Q9ULX3 412 aaKnown RBP29.39■■■□□ 2.3
FOXA1-202ENST00000545425 SLC4A3P48751 1232 aa29.38■■■□□ 2.29
FOXA1-202ENST00000545425 ITPRIPQ8IWB1 547 aa29.38■■■□□ 2.29
FOXA1-202ENST00000545425 GNAI1P63096 354 aa29.38■■■□□ 2.29
FOXA1-202ENST00000545425 IFT57Q9NWB7 429 aa29.38■■■□□ 2.29
FOXA1-202ENST00000545425 AKAP12Q02952 1782 aa29.38■■■□□ 2.29
FOXA1-202ENST00000545425 PRKAR2BP31323 418 aa29.37■■■□□ 2.29
FOXA1-202ENST00000545425 ZNF692Q9BU19 519 aaPredicted RBP29.37■■■□□ 2.29
FOXA1-202ENST00000545425 ITSN1Q15811 1721 aa29.35■■■□□ 2.29
FOXA1-202ENST00000545425 SEC24BO95487 1268 aa29.34■■■□□ 2.29
FOXA1-202ENST00000545425 IL13P35225 146 aa29.33■■■□□ 2.29
FOXA1-202ENST00000545425 CCDC61Q9Y6R9 512 aa29.33■■■□□ 2.29
FOXA1-202ENST00000545425 WAPLQ7Z5K2 1190 aa29.32■■■□□ 2.28
FOXA1-202ENST00000545425 TMEM57Q8N5G2 664 aa29.32■■■□□ 2.28
FOXA1-202ENST00000545425 MST1RQ04912 1400 aa29.32■■■□□ 2.28
FOXA1-202ENST00000545425 BRINP3Q76B58 766 aa29.31■■■□□ 2.28
FOXA1-202ENST00000545425 KIF24Q5T7B8 1368 aa29.31■■■□□ 2.28
FOXA1-202ENST00000545425 HAP1P54257 671 aaPredicted RBP29.31■■■□□ 2.28
FOXA1-202ENST00000545425 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.31■■■□□ 2.28
FOXA1-202ENST00000545425 NRKQ7Z2Y5 1582 aa29.3■■■□□ 2.28
FOXA1-202ENST00000545425 ZNF853P0CG23 659 aa29.3■■■□□ 2.28
FOXA1-202ENST00000545425 COG3Q96JB2 828 aa29.3■■■□□ 2.28
FOXA1-202ENST00000545425 EIF5BO60841 1220 aaKnown RBP29.29■■■□□ 2.28
FOXA1-202ENST00000545425 NUDT16Q96DE0 195 aaKnown RBP29.28■■■□□ 2.28
FOXA1-202ENST00000545425 GCC1Q96CN9 775 aa29.27■■■□□ 2.28
FOXA1-202ENST00000545425 NALCNQ8IZF0 1738 aa29.27■■■□□ 2.28
FOXA1-202ENST00000545425 NUCB1Q02818 461 aa29.27■■■□□ 2.28
FOXA1-202ENST00000545425 VAMP4O75379 141 aa29.25■■■□□ 2.27
FOXA1-202ENST00000545425 MED1Q15648 1581 aaPredicted RBP29.25■■■□□ 2.27
FOXA1-202ENST00000545425 MRPL50Q8N5N7 158 aaKnown RBP29.24■■■□□ 2.27
FOXA1-202ENST00000545425 CFAP44Q96MT7 982 aa29.24■■■□□ 2.27
FOXA1-202ENST00000545425 API5Q9BZZ5 524 aaKnown RBP29.22■■■□□ 2.27
FOXA1-202ENST00000545425 JCADQ9P266 1359 aa29.22■■■□□ 2.27
FOXA1-202ENST00000545425 PHLPP1O60346 1717 aa29.22■■■□□ 2.27
FOXA1-202ENST00000545425 C1orf167Q5SNV9 1468 aa29.22■■■□□ 2.27
FOXA1-202ENST00000545425 AHDC1Q5TGY3 1603 aaPredicted RBP29.22■■■□□ 2.27
FOXA1-202ENST00000545425 ABCC4O15439 1325 aa29.21■■■□□ 2.27
FOXA1-202ENST00000545425 C22orf23Q9BZE7 217 aa29.21■■■□□ 2.27
FOXA1-202ENST00000545425 ANTXR1Q9H6X2 564 aa29.21■■■□□ 2.27
FOXA1-202ENST00000545425 TOPAZ1Q8N9V7 1692 aa29.21■■■□□ 2.27
FOXA1-202ENST00000545425 FRAT2O75474 233 aaPredicted RBP29.2■■■□□ 2.26
FOXA1-202ENST00000545425 NME9Q86XW9 330 aa29.2■■■□□ 2.26
FOXA1-202ENST00000545425 PHACTR3Q96KR7 559 aa29.19■■■□□ 2.26
FOXA1-202ENST00000545425 EMILIN1Q9Y6C2 1016 aa29.19■■■□□ 2.26
FOXA1-202ENST00000545425 TBC1D2Q9BYX2 928 aa29.18■■■□□ 2.26
FOXA1-202ENST00000545425 DLG5Q8TDM6 1919 aa29.18■■■□□ 2.26
FOXA1-202ENST00000545425 ZBTB7BO15156 539 aaPredicted RBP29.17■■■□□ 2.26
FOXA1-202ENST00000545425 CHD1LQ86WJ1 897 aa29.17■■■□□ 2.26
FOXA1-202ENST00000545425 COL16A1Q07092 1604 aaPredicted RBP29.16■■■□□ 2.26
FOXA1-202ENST00000545425 BMP2KLQ5H9B9 411 aa29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms