RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 MED1Q15648 1581 aaPredicted RBP40.19■■■■■ 4.02
CCM2-219ENST00000544363 RSPH6AQ9H0K4 717 aa40.18■■■■■ 4.02
CCM2-219ENST00000544363 PHRF1Q9P1Y6 1649 aaKnown RBP40.16■■■■■ 4.02
CCM2-219ENST00000544363 PLEKHG5O94827 1062 aa40.16■■■■■ 4.02
CCM2-219ENST00000544363 IP6K1Q92551 441 aa40.16■■■■■ 4.02
CCM2-219ENST00000544363 ZNF521Q96K83 1311 aa40.15■■■■■ 4.02
CCM2-219ENST00000544363 ARHGEF25Q86VW2 580 aa40.15■■■■■ 4.02
CCM2-219ENST00000544363 HMOX1P09601 288 aa40.14■■■■■ 4.02
CCM2-219ENST00000544363 MAPK8IP3Q9UPT6 1336 aa40.13■■■■■ 4.01
CCM2-219ENST00000544363 NCBP3Q53F19 620 aaKnown RBP40.13■■■■■ 4.01
CCM2-219ENST00000544363 RGPD1P0DJD0 1748 aa40.12■■■■■ 4.01
CCM2-219ENST00000544363 PRKAR2BP31323 418 aa40.12■■■■■ 4.01
CCM2-219ENST00000544363 ROBO1Q9Y6N7 1651 aa40.11■■■■■ 4.01
CCM2-219ENST00000544363 RRP7AQ9Y3A4 280 aaKnown RBP40.08■■■■■ 4.01
CCM2-219ENST00000544363 CRYBG1Q9Y4K1 1723 aa40.07■■■■■ 4.01
CCM2-219ENST00000544363 ZBTB7CA1YPR0 619 aa40.07■■■■■ 4.01
CCM2-219ENST00000544363 NEFMP07197 916 aa40.07■■■■■ 4.01
CCM2-219ENST00000544363 NEUROD2Q15784 382 aa40.05■■■■■ 4
CCM2-219ENST00000544363 CCDC27Q2M243 656 aa40.05■■■■■ 4
CCM2-219ENST00000544363 SULT6B1Q6IMI4 303 aa40.05■■■■■ 4
CCM2-219ENST00000544363 CABLES1Q8TDN4 633 aa40.05■■■■■ 4
CCM2-219ENST00000544363 CDCA7LQ96GN5 454 aa40.05■■■■■ 4
CCM2-219ENST00000544363 TMPOP42166 694 aaKnown RBP40.04■■■■■ 4
CCM2-219ENST00000544363 PHF23Q9BUL5 403 aaPredicted RBP40.04■■■■■ 4
CCM2-219ENST00000544363 WWC1Q8IX03 1113 aa40.03■■■■■ 4
CCM2-219ENST00000544363 GOLGA2Q08379 1002 aa40.02■■■■■ 4
CCM2-219ENST00000544363 EYA1Q99502 592 aa40.02■■■■■ 4
CCM2-219ENST00000544363 IGSF1Q8N6C5 1336 aa40.02■■■■■ 4
CCM2-219ENST00000544363 TOM1O60784 492 aa40.02■■■■■ 4
CCM2-219ENST00000544363 ZC3H6P61129 1189 aaKnown RBP40.02■■■■■ 4
CCM2-219ENST00000544363 AHDC1Q5TGY3 1603 aaPredicted RBP40.02■■■■■ 4
CCM2-219ENST00000544363 AEBP1Q8IUX7 1158 aa40.02■■■■■ 4
CCM2-219ENST00000544363 LTV1Q96GA3 475 aaPredicted RBP39.99■■■■□ 3.99
CCM2-219ENST00000544363 PHACTR3Q96KR7 559 aa39.99■■■■□ 3.99
CCM2-219ENST00000544363 KDRP35968 1356 aa39.97■■■■□ 3.99
CCM2-219ENST00000544363 CPDO75976 1380 aa39.94■■■■□ 3.98
CCM2-219ENST00000544363 RIPK4P57078 832 aa39.94■■■■□ 3.98
CCM2-219ENST00000544363 LRRC59Q96AG4 307 aaKnown RBP39.94■■■■□ 3.98
CCM2-219ENST00000544363 NFE2L2Q16236 605 aa39.93■■■■□ 3.98
CCM2-219ENST00000544363 SLFN5Q08AF3 891 aa39.92■■■■□ 3.98
CCM2-219ENST00000544363 WDR63Q8IWG1 891 aa39.92■■■■□ 3.98
CCM2-219ENST00000544363 AXIN2Q9Y2T1 843 aa39.92■■■■□ 3.98
CCM2-219ENST00000544363 TRIM35Q9UPQ4 493 aa39.91■■■■□ 3.98
CCM2-219ENST00000544363 ABCC6O95255 1503 aa39.9■■■■□ 3.98
CCM2-219ENST00000544363 E9PSI1 815 aa39.89■■■■□ 3.98
CCM2-219ENST00000544363 COL18A1P39060 1754 aa39.89■■■■□ 3.98
CCM2-219ENST00000544363 KIAA0232Q92628 1395 aa39.88■■■■□ 3.98
CCM2-219ENST00000544363 ANKRD24Q8TF21 1146 aa39.88■■■■□ 3.97
CCM2-219ENST00000544363 ABCA3Q99758 1704 aa39.88■■■■□ 3.97
CCM2-219ENST00000544363 DUSP27Q5VZP5 1158 aa39.87■■■■□ 3.97
CCM2-219ENST00000544363 TRMT2AQ8IZ69 625 aaKnown RBP39.87■■■■□ 3.97
CCM2-219ENST00000544363 GTF3C3Q9Y5Q9 886 aa39.87■■■■□ 3.97
CCM2-219ENST00000544363 SPINK5Q9NQ38 1064 aaPredicted RBP39.87■■■■□ 3.97
CCM2-219ENST00000544363 RGPD5Q99666 1765 aa39.85■■■■□ 3.97
CCM2-219ENST00000544363 UBAP1LF5GYI3 381 aa39.85■■■■□ 3.97
CCM2-219ENST00000544363 HAP1P54257 671 aaPredicted RBP39.85■■■■□ 3.97
CCM2-219ENST00000544363 PIP4K2BP78356 416 aa39.85■■■■□ 3.97
CCM2-219ENST00000544363 NBPF6Q5VWK0 638 aa39.85■■■■□ 3.97
CCM2-219ENST00000544363 NBPF4Q96M43 638 aa39.85■■■■□ 3.97
CCM2-219ENST00000544363 SUPT16HQ9Y5B9 1047 aaKnown RBP39.83■■■■□ 3.97
CCM2-219ENST00000544363 CHRNA2Q15822 529 aa39.82■■■■□ 3.96
CCM2-219ENST00000544363 PHLPP1O60346 1717 aa39.81■■■■□ 3.96
CCM2-219ENST00000544363 ERBB3P21860 1342 aa39.81■■■■□ 3.96
CCM2-219ENST00000544363 USHBP1Q8N6Y0 703 aa39.8■■■■□ 3.96
CCM2-219ENST00000544363 CERKQ8TCT0 537 aa39.8■■■■□ 3.96
CCM2-219ENST00000544363 RGPD2P0DJD1 1756 aa39.8■■■■□ 3.96
CCM2-219ENST00000544363 PRDM11Q9NQV5 511 aa39.78■■■■□ 3.96
CCM2-219ENST00000544363 NCAPD2Q15021 1401 aa39.78■■■■□ 3.96
CCM2-219ENST00000544363 COL16A1Q07092 1604 aaPredicted RBP39.78■■■■□ 3.96
CCM2-219ENST00000544363 LMOD3Q0VAK6 560 aa39.77■■■■□ 3.96
CCM2-219ENST00000544363 DLG5Q8TDM6 1919 aa39.77■■■■□ 3.96
CCM2-219ENST00000544363 CAMTA1Q9Y6Y1 1673 aa39.76■■■■□ 3.96
CCM2-219ENST00000544363 COL22A1Q8NFW1 1626 aaPredicted RBP39.76■■■■□ 3.95
CCM2-219ENST00000544363 IL16Q14005 1332 aa39.75■■■■□ 3.95
CCM2-219ENST00000544363 MTHFSDQ2M296 383 aaKnown RBP39.72■■■■□ 3.95
CCM2-219ENST00000544363 GAS2L2Q8NHY3 880 aa39.71■■■■□ 3.95
CCM2-219ENST00000544363 RCAN3Q9UKA8 241 aa39.71■■■■□ 3.95
CCM2-219ENST00000544363 LMO7Q8WWI1 1683 aa39.7■■■■□ 3.95
CCM2-219ENST00000544363 MYH16Q9H6N6 1097 aa39.7■■■■□ 3.95
CCM2-219ENST00000544363 CALD1Q05682 793 aaKnown RBP39.68■■■■□ 3.94
CCM2-219ENST00000544363 FAM208AQ9UK61 1670 aaKnown RBP39.68■■■■□ 3.94
CCM2-219ENST00000544363 CSB-PGBD3P0DP91 1061 aa39.66■■■■□ 3.94
CCM2-219ENST00000544363 NLRP2Q9NX02 1062 aa39.65■■■■□ 3.94
CCM2-219ENST00000544363 NEFLP07196 543 aa39.65■■■■□ 3.94
CCM2-219ENST00000544363 FAM83GA6ND36 823 aa39.63■■■■□ 3.93
CCM2-219ENST00000544363 THUMPD2Q9BTF0 503 aaKnown RBP39.62■■■■□ 3.93
CCM2-219ENST00000544363 RNF123Q5XPI4 1314 aa39.62■■■■□ 3.93
CCM2-219ENST00000544363 COL5A2P05997 1499 aaPredicted RBP39.59■■■■□ 3.93
CCM2-219ENST00000544363 DCTN1Q14203 1278 aa39.58■■■■□ 3.93
CCM2-219ENST00000544363 WDR17Q8IZU2 1322 aa39.58■■■■□ 3.93
CCM2-219ENST00000544363 FANCIQ9NVI1 1328 aa39.58■■■■□ 3.93
CCM2-219ENST00000544363 HTATSF1O43719 755 aaKnown RBP39.58■■■■□ 3.93
CCM2-219ENST00000544363 PLEKHO1Q53GL0 409 aaPredicted RBP39.56■■■■□ 3.92
CCM2-219ENST00000544363 RTF1Q92541 710 aaKnown RBP39.56■■■■□ 3.92
CCM2-219ENST00000544363 IFT57Q9NWB7 429 aa39.56■■■■□ 3.92
CCM2-219ENST00000544363 AMOTQ4VCS5 1084 aa39.55■■■■□ 3.92
CCM2-219ENST00000544363 TSR2Q969E8 191 aaKnown RBP39.55■■■■□ 3.92
CCM2-219ENST00000544363 GNAT3A8MTJ3 354 aa39.54■■■■□ 3.92
CCM2-219ENST00000544363 GNAI1P63096 354 aa39.54■■■■□ 3.92
CCM2-219ENST00000544363 FKBP8Q14318 412 aa39.54■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms