RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 RAPGEF2Q9Y4G8 1499 aa18.24■□□□□ 0.51
CHD4-210ENST00000544040 CBX1P83916 185 aa18.23■□□□□ 0.51
CHD4-210ENST00000544040 PRKAR2BP31323 418 aa18.23■□□□□ 0.51
CHD4-210ENST00000544040 TRIM22Q8IYM9 498 aa18.23■□□□□ 0.51
CHD4-210ENST00000544040 GBP2P32456 591 aaPredicted RBP18.23■□□□□ 0.51
CHD4-210ENST00000544040 KIAA1328Q86T90 577 aa18.23■□□□□ 0.51
CHD4-210ENST00000544040 PDCL2Q8N4E4 241 aa18.23■□□□□ 0.51
CHD4-210ENST00000544040 SLC4A2P04920 1241 aa18.22■□□□□ 0.51
CHD4-210ENST00000544040 AKNAQ7Z591 1439 aa18.22■□□□□ 0.51
CHD4-210ENST00000544040 ERC1Q8IUD2 1116 aa18.22■□□□□ 0.51
CHD4-210ENST00000544040 NUP62CLQ9H1M0 184 aa18.22■□□□□ 0.51
CHD4-210ENST00000544040 UPF3BQ9BZI7 483 aaKnown RBP18.22■□□□□ 0.51
CHD4-210ENST00000544040 EZRP15311 586 aaKnown RBP18.21■□□□□ 0.51
CHD4-210ENST00000544040 SSR1P43307 286 aaKnown RBP18.21■□□□□ 0.51
CHD4-210ENST00000544040 NLRP6P59044 892 aa18.21■□□□□ 0.51
CHD4-210ENST00000544040 PDRG1Q9NUG6 133 aa18.21■□□□□ 0.51
CHD4-210ENST00000544040 ANKRD1Q15327 319 aa18.21■□□□□ 0.51
CHD4-210ENST00000544040 DYDC1Q8WWB3 177 aa18.21■□□□□ 0.51
CHD4-210ENST00000544040 SYCE3A1L190 88 aa18.21■□□□□ 0.5
CHD4-210ENST00000544040 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.2■□□□□ 0.56e-7■■□□□ 14.3
CHD4-210ENST00000544040 ESPNB1AK53 854 aa18.2■□□□□ 0.5
CHD4-210ENST00000544040 NACADO15069 1562 aa18.2■□□□□ 0.5
CHD4-210ENST00000544040 SPINK5Q9NQ38 1064 aaPredicted RBP18.2■□□□□ 0.5
CHD4-210ENST00000544040 IQCEQ6IPM2 695 aa18.2■□□□□ 0.5
CHD4-210ENST00000544040 CWC27Q6UX04 472 aaKnown RBP18.2■□□□□ 0.5
CHD4-210ENST00000544040 JAKMIP1Q96N16 626 aaKnown RBP18.2■□□□□ 0.5
CHD4-210ENST00000544040 TMX1Q9H3N1 280 aa18.2■□□□□ 0.5
CHD4-210ENST00000544040 INCENPQ9NQS7 918 aa18.2■□□□□ 0.5
CHD4-210ENST00000544040 CCDC113Q9H0I3 377 aa18.19■□□□□ 0.5
CHD4-210ENST00000544040 EPB41L2O43491 1005 aaKnown RBP18.19■□□□□ 0.5
CHD4-210ENST00000544040 FKBP4Q02790 459 aaKnown RBP eCLIP18.19■□□□□ 0.5
CHD4-210ENST00000544040 GOLGA6L10A0A0M3HER8 536 aa18.19■□□□□ 0.5
CHD4-210ENST00000544040 USP8P40818 1118 aa18.19■□□□□ 0.5
CHD4-210ENST00000544040 MATR3P43243 847 aaKnown RBP eCLIP18.19■□□□□ 0.52e-6■■■■□ 22.9
CHD4-210ENST00000544040 TRERF1Q96PN7 1200 aa18.19■□□□□ 0.5
CHD4-210ENST00000544040 PPP2R1AP30153 589 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 CEP57L1Q8IYX8 460 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 TXLNBQ8N3L3 684 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 BACH2Q9BYV9 841 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 SOGA3Q5TF21 947 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 JPH4Q96JJ6 628 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 EIF5P55010 431 aaKnown RBP18.18■□□□□ 0.5
CHD4-210ENST00000544040 BRD4O60885 1362 aaPredicted RBP18.18■□□□□ 0.5
CHD4-210ENST00000544040 GIMAP7Q8NHV1 300 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 TICAM2Q86XR7 235 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 DDX11Q96FC9 970 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 MIA2Q96PC5 1412 aa18.18■□□□□ 0.5
CHD4-210ENST00000544040 UBXN4Q92575 508 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 WASHC2AQ641Q2 1341 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 RRP9O43818 475 aaKnown RBP18.17■□□□□ 0.5
CHD4-210ENST00000544040 DHX8Q14562 1220 aaKnown RBP18.17■□□□□ 0.5
CHD4-210ENST00000544040 TAF4BQ92750 862 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 NOL7Q9UMY1 257 aaKnown RBP18.17■□□□□ 0.5
CHD4-210ENST00000544040 MYL6BP14649 208 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 CFAP100Q494V2 611 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 ARHGAP29Q52LW3 1261 aa18.17■□□□□ 0.5
CHD4-210ENST00000544040 AACSQ86V21 672 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 TMCO3Q6UWJ1 677 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 ATF3P18847 181 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 MCM4P33991 863 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 MAP2K1Q02750 393 aaPredicted RBP18.16■□□□□ 0.5
CHD4-210ENST00000544040 CCDC148Q8NFR7 591 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 GAS2L2Q8NHY3 880 aa18.16■□□□□ 0.5
CHD4-210ENST00000544040 BLOC1S2Q6QNY1 142 aa18.15■□□□□ 0.5
CHD4-210ENST00000544040 CHD1LQ86WJ1 897 aa18.15■□□□□ 0.5
CHD4-210ENST00000544040 NACAP1Q9BZK3 213 aa18.15■□□□□ 0.5
CHD4-210ENST00000544040 GNL3LQ9NVN8 582 aaKnown RBP18.15■□□□□ 0.5
CHD4-210ENST00000544040 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.15■□□□□ 0.54e-6■■□□□ 11.4
CHD4-210ENST00000544040 ABTB2Q8N961 1025 aa18.15■□□□□ 0.5
CHD4-210ENST00000544040 NEBLO76041 1014 aa18.14■□□□□ 0.49
CHD4-210ENST00000544040 HDGFL1Q5TGJ6 251 aa18.14■□□□□ 0.49
CHD4-210ENST00000544040 DNA2P51530 1060 aa18.14■□□□□ 0.49
CHD4-210ENST00000544040 JAKMIP3Q5VZ66 844 aa18.14■□□□□ 0.49
CHD4-210ENST00000544040 CCDC97Q96F63 343 aaPredicted RBP18.14■□□□□ 0.49
CHD4-210ENST00000544040 CRACR2AQ9BSW2 395 aa18.14■□□□□ 0.49
CHD4-210ENST00000544040 SMTNL1A8MU46 457 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 POLR3GO15318 223 aaPredicted RBP18.13■□□□□ 0.49
CHD4-210ENST00000544040 CFAP45Q9UL16 551 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 RBM5P52756 815 aaKnown RBP eCLIP18.13■□□□□ 0.494e-8■□□□□ 9.6
CHD4-210ENST00000544040 IL1RAPL2Q9NP60 686 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 CCDC57Q2TAC2 916 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 SHTN1A0MZ66 631 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 CASQ1P31415 396 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 PDS5BQ9NTI5 1447 aa18.13■□□□□ 0.49
CHD4-210ENST00000544040 PDE3AQ14432 1141 aa18.12■□□□□ 0.49
CHD4-210ENST00000544040 CASTP20810 708 aaKnown RBP18.12■□□□□ 0.49
CHD4-210ENST00000544040 MAP3K11Q16584 847 aa18.12■□□□□ 0.49
CHD4-210ENST00000544040 GOPCQ9HD26 462 aa18.12■□□□□ 0.49
CHD4-210ENST00000544040 PPP1R1BQ9UD71 204 aaPredicted RBP18.12■□□□□ 0.49
CHD4-210ENST00000544040 PLEKHO1Q53GL0 409 aaPredicted RBP18.12■□□□□ 0.49
CHD4-210ENST00000544040 STRN4Q9NRL3 753 aa18.12■□□□□ 0.49
CHD4-210ENST00000544040 BCCIPQ9P287 314 aaKnown RBP eCLIP18.12■□□□□ 0.49
CHD4-210ENST00000544040 FERMT3Q86UX7 667 aa18.12■□□□□ 0.49
CHD4-210ENST00000544040 TDO2P48775 406 aa18.11■□□□□ 0.49
CHD4-210ENST00000544040 USP5P45974 858 aa18.11■□□□□ 0.49
CHD4-210ENST00000544040 PTPN14Q15678 1187 aa18.11■□□□□ 0.49
CHD4-210ENST00000544040 CCT4P50991 539 aaKnown RBP18.11■□□□□ 0.49
CHD4-210ENST00000544040 BMP2KQ9NSY1 1161 aaPredicted RBP18.11■□□□□ 0.49
CHD4-210ENST00000544040 SLC26A8Q96RN1 970 aa18.1■□□□□ 0.49
CHD4-210ENST00000544040 ZNF76P36508 570 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms