RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	TMEM2	Q9UHN6	1383 aa		18.75	■□□□□ 0.59
DDX55-209	ENST00000542286	ACE	P12821	1306 aa		18.75	■□□□□ 0.59
DDX55-209	ENST00000542286	C8orf58	Q8NAV2	365 aa		18.75	■□□□□ 0.59
DDX55-209	ENST00000542286	HSP90AB2P	Q58FF8	381 aa		18.74	■□□□□ 0.59
DDX55-209	ENST00000542286	SULT6B1	Q6IMI4	303 aa		18.73	■□□□□ 0.59
DDX55-209	ENST00000542286	SPRYD3	Q8NCJ5	442 aa		18.73	■□□□□ 0.59
DDX55-209	ENST00000542286	IL16	Q14005	1332 aa		18.73	■□□□□ 0.59
DDX55-209	ENST00000542286	VAMP4	O75379	141 aa		18.73	■□□□□ 0.59
DDX55-209	ENST00000542286	SLK	Q9H2G2	1235 aa	Predicted RBP	18.72	■□□□□ 0.59
DDX55-209	ENST00000542286	DDX19B	Q9UMR2	479 aa		18.72	■□□□□ 0.59
DDX55-209	ENST00000542286	RBM33	Q96EV2	1170 aa	Known RBP	18.72	■□□□□ 0.59
DDX55-209	ENST00000542286	NUTM2G	Q5VZR2	741 aa		18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	MCM10	Q7L590	875 aa		18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	LNPK	Q9C0E8	428 aa		18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	PNN	Q9H307	717 aa	Known RBP	18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	ZBTB40	Q9NUA8	1239 aa		18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	ADAMTS13	Q76LX8	1427 aa		18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	EIF4A2	Q14240	407 aa	Known RBP	18.71	■□□□□ 0.59
DDX55-209	ENST00000542286	CT47B1	P0C2W7	299 aa	Predicted RBP	18.7	■□□□□ 0.58
DDX55-209	ENST00000542286	NCBP3	Q53F19	620 aa	Known RBP	18.7	■□□□□ 0.58
DDX55-209	ENST00000542286	MIS18A	Q9NYP9	233 aa		18.7	■□□□□ 0.58
DDX55-209	ENST00000542286	FRAT2	O75474	233 aa	Predicted RBP	18.7	■□□□□ 0.58
DDX55-209	ENST00000542286	TTC21B	Q7Z4L5	1316 aa		18.7	■□□□□ 0.58
DDX55-209	ENST00000542286	MFAP1	P55081	439 aa	Known RBP	18.69	■□□□□ 0.58
DDX55-209	ENST00000542286	MRPL50	Q8N5N7	158 aa	Known RBP	18.69	■□□□□ 0.58
DDX55-209	ENST00000542286	PTPRU	Q92729	1446 aa		18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	FOXO3	O43524	673 aa		18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	TWISTNB	Q3B726	338 aa	Predicted RBP	18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	CDC42BPG	Q6DT37	1551 aa		18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	AMOTL2	Q9Y2J4	779 aa		18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	KIF16B	Q96L93	1317 aa		18.68	■□□□□ 0.58
DDX55-209	ENST00000542286	HDGF	P51858	240 aa	Known RBP	18.67	■□□□□ 0.58
DDX55-209	ENST00000542286	PLEKHG5	O94827	1062 aa		18.67	■□□□□ 0.58
DDX55-209	ENST00000542286	UBR1	Q8IWV7	1749 aa		18.66	■□□□□ 0.58
DDX55-209	ENST00000542286	IPO8	O15397	1037 aa	Known RBP	18.66	■□□□□ 0.58
DDX55-209	ENST00000542286	DLG5	Q8TDM6	1919 aa		18.65	■□□□□ 0.58
DDX55-209	ENST00000542286	CDK12	Q9NYV4	1490 aa	Predicted RBP	18.65	■□□□□ 0.58
DDX55-209	ENST00000542286	GNAI1	P63096	354 aa		18.65	■□□□□ 0.58
DDX55-209	ENST00000542286	VIRMA	Q69YN4	1812 aa	Known RBP	18.65	■□□□□ 0.58
DDX55-209	ENST00000542286	HDAC1	Q13547	482 aa	Predicted RBP	18.64	■□□□□ 0.58
DDX55-209	ENST00000542286	ZNF853	P0CG23	659 aa		18.64	■□□□□ 0.57
DDX55-209	ENST00000542286	ALDH1L2	Q3SY69	923 aa		18.64	■□□□□ 0.57
DDX55-209	ENST00000542286	IFT57	Q9NWB7	429 aa		18.64	■□□□□ 0.57
DDX55-209	ENST00000542286	TECPR2	O15040	1411 aa		18.64	■□□□□ 0.57
DDX55-209	ENST00000542286	ZBTB7B	O15156	539 aa	Predicted RBP	18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	FAM43A	Q8N2R8	423 aa		18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	AATK	Q6ZMQ8	1374 aa		18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	AAMP	Q13685	434 aa		18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	SMC5	Q8IY18	1101 aa		18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	CFAP44	Q96MT7	982 aa		18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	ZNF692	Q9BU19	519 aa	Predicted RBP	18.63	■□□□□ 0.57
DDX55-209	ENST00000542286	SIRT2	Q8IXJ6	389 aa		18.62	■□□□□ 0.57
DDX55-209	ENST00000542286	TBC1D32	Q96NH3	1257 aa		18.62	■□□□□ 0.57
DDX55-209	ENST00000542286	MON2	Q7Z3U7	1717 aa		18.62	■□□□□ 0.57
DDX55-209	ENST00000542286	ANKRD45	Q5TZF3	282 aa		18.62	■□□□□ 0.57
DDX55-209	ENST00000542286	C3	P01024	1663 aa		18.61	■□□□□ 0.57
DDX55-209	ENST00000542286	NGDN	Q8NEJ9	315 aa	Known RBP	18.61	■□□□□ 0.57
DDX55-209	ENST00000542286	ITSN1	Q15811	1721 aa		18.6	■□□□□ 0.57
DDX55-209	ENST00000542286	TBC1D2	Q9BYX2	928 aa		18.6	■□□□□ 0.57
DDX55-209	ENST00000542286	EID1	Q9Y6B2	187 aa		18.6	■□□□□ 0.57
DDX55-209	ENST00000542286	MAP3K19	Q56UN5	1328 aa		18.6	■□□□□ 0.57
DDX55-209	ENST00000542286	UPF2	Q9HAU5	1272 aa	Known RBP	18.59	■□□□□ 0.57
DDX55-209	ENST00000542286	USP6	P35125	1406 aa		18.59	■□□□□ 0.57
DDX55-209	ENST00000542286	APBB1	O00213	710 aa		18.59	■□□□□ 0.57
DDX55-209	ENST00000542286	LTV1	Q96GA3	475 aa	Predicted RBP	18.59	■□□□□ 0.57
DDX55-209	ENST00000542286	AKAP12	Q02952	1782 aa		18.58	■□□□□ 0.57
DDX55-209	ENST00000542286	SIRT1	Q96EB6	747 aa		18.58	■□□□□ 0.56
DDX55-209	ENST00000542286	NUCB1	Q02818	461 aa		18.58	■□□□□ 0.56
DDX55-209	ENST00000542286	CHD1L	Q86WJ1	897 aa		18.58	■□□□□ 0.56
DDX55-209	ENST00000542286	PLEKHG1	Q9ULL1	1385 aa		18.58	■□□□□ 0.56
DDX55-209	ENST00000542286	PEAK1	Q9H792	1746 aa		18.57	■□□□□ 0.56
DDX55-209	ENST00000542286	PLEKHG3	A1L390	1219 aa		18.57	■□□□□ 0.56
DDX55-209	ENST00000542286	KNDC1	Q76NI1	1749 aa		18.57	■□□□□ 0.56
DDX55-209	ENST00000542286	RIMS1	Q86UR5	1692 aa	Known RBP	18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	KCNA6	P17658	529 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	C14orf37	Q86TY3	774 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	NECTIN2	Q92692	538 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	C22orf23	Q9BZE7	217 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	RGPD8	O14715	1765 aa	Predicted RBP	18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	TRH	P20396	242 aa	Predicted RBP	18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	CALD1	Q05682	793 aa	Known RBP	18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	OVOS2	A0A0J9YW53	1432 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	OVOS2	Q6IE36	1432 aa		18.56	■□□□□ 0.56
DDX55-209	ENST00000542286	MTHFSD	Q2M296	383 aa	Known RBP	18.55	■□□□□ 0.56
DDX55-209	ENST00000542286	ABCC4	O15439	1325 aa		18.54	■□□□□ 0.56
DDX55-209	ENST00000542286	AMPH	P49418	695 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	NLRP6	P59044	892 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	LMOD3	Q0VAK6	560 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	C16orf71	Q8IYS4	520 aa	Predicted RBP	18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	USHBP1	Q8N6Y0	703 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	ZBTB7C	A1YPR0	619 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286	BECN1	Q14457	450 aa		18.53	■□□□□ 0.56
DDX55-209	ENST00000542286		F6X3S4	739 aa		18.52	■□□□□ 0.56
DDX55-209	ENST00000542286	G2E3	Q7L622	706 aa		18.52	■□□□□ 0.56
DDX55-209	ENST00000542286	EYA1	Q99502	592 aa		18.52	■□□□□ 0.56
DDX55-209	ENST00000542286	PTCH1	Q13635	1447 aa		18.52	■□□□□ 0.56
DDX55-209	ENST00000542286	OTUD7A	Q8TE49	926 aa	Predicted RBP	18.51	■□□□□ 0.55
DDX55-209	ENST00000542286	BRPF1	P55201	1214 aa	Predicted RBP	18.51	■□□□□ 0.55
DDX55-209	ENST00000542286	CHL1	O00533	1208 aa		18.5	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms