RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SRCAPQ6ZRS2 3230 aa12.02□□□□□ -0.48
USP28-203ENST00000537490 CSB-PGBD3P0DP91 1061 aa12.02□□□□□ -0.49
USP28-203ENST00000537490 TMC1Q8TDI8 760 aa12.02□□□□□ -0.49
USP28-203ENST00000537490 SLC12A5Q9H2X9 1139 aa12.02□□□□□ -0.49
USP28-203ENST00000537490 COL18A1P39060 1754 aa12.02□□□□□ -0.49
USP28-203ENST00000537490 LRP5O75197 1615 aa12.01□□□□□ -0.49
USP28-203ENST00000537490 C11orf95C9JLR9 678 aaPredicted RBP12.01□□□□□ -0.49
USP28-203ENST00000537490 PTF1AQ7RTS3 328 aa12.01□□□□□ -0.49
USP28-203ENST00000537490 NME9Q86XW9 330 aa12.01□□□□□ -0.49
USP28-203ENST00000537490 MARCH10Q8NA82 808 aaPredicted RBP12.01□□□□□ -0.49
USP28-203ENST00000537490 CARD10Q9BWT7 1032 aa12.01□□□□□ -0.49
USP28-203ENST00000537490 TONSLQ96HA7 1378 aa12.01□□□□□ -0.49
USP28-203ENST00000537490 NBPF14Q5TI25 921 aa12□□□□□ -0.49
USP28-203ENST00000537490 CDCA7Q9BWT1 371 aaPredicted RBP12□□□□□ -0.49
USP28-203ENST00000537490 USP31Q70CQ4 1352 aa12□□□□□ -0.49
USP28-203ENST00000537490 OVOS2A0A0G2JMS6 1433 aa12□□□□□ -0.49
USP28-203ENST00000537490 OVOS2A0A0J9YW53 1432 aa12□□□□□ -0.49
USP28-203ENST00000537490 OVOS2Q6IE36 1432 aa12□□□□□ -0.49
USP28-203ENST00000537490 CD163L1Q9NR16 1453 aa12□□□□□ -0.49
USP28-203ENST00000537490 PARP4Q9UKK3 1724 aaKnown RBP12□□□□□ -0.49
USP28-203ENST00000537490 HDGFL2Q7Z4V5 671 aaPredicted RBP11.99□□□□□ -0.49
USP28-203ENST00000537490 AKAP12Q02952 1782 aa11.99□□□□□ -0.49
USP28-203ENST00000537490 NFAT5O94916 1531 aa11.98□□□□□ -0.49
USP28-203ENST00000537490 PLSCR1O15162 318 aa11.98□□□□□ -0.49
USP28-203ENST00000537490 BCL11BQ9C0K0 894 aaPredicted RBP11.98□□□□□ -0.49
USP28-203ENST00000537490 EXOC5O00471 708 aa11.97□□□□□ -0.49
USP28-203ENST00000537490 PUS7Q96PZ0 661 aaKnown RBP11.97□□□□□ -0.49
USP28-203ENST00000537490 TESK2Q96S53 571 aa11.97□□□□□ -0.49
USP28-203ENST00000537490 PEAK1Q9H792 1746 aa11.97□□□□□ -0.49
USP28-203ENST00000537490 LRRC37A3O60309 1634 aa11.97□□□□□ -0.49
USP28-203ENST00000537490 CCDC7Q96M83 1385 aa11.96□□□□□ -0.49
USP28-203ENST00000537490 ST20-MTHFSA0A0A6YYL1 179 aa11.96□□□□□ -0.49
USP28-203ENST00000537490 PROM2Q8N271 834 aa11.96□□□□□ -0.49
USP28-203ENST00000537490 TERF2IPQ9NYB0 399 aa11.96□□□□□ -0.49
USP28-203ENST00000537490 A0A1W2PP64 1363 aa11.95□□□□□ -0.5
USP28-203ENST00000537490 ERBB3P21860 1342 aa11.95□□□□□ -0.5
USP28-203ENST00000537490 RREB1Q92766 1687 aa11.95□□□□□ -0.5
USP28-203ENST00000537490 NLRP2Q9NX02 1062 aa11.95□□□□□ -0.5
USP28-203ENST00000537490 BCL9O00512 1426 aa11.94□□□□□ -0.5
USP28-203ENST00000537490 EDC4Q6P2E9 1401 aaKnown RBP11.94□□□□□ -0.5
USP28-203ENST00000537490 NUP188Q5SRE5 1749 aa11.94□□□□□ -0.5
USP28-203ENST00000537490 MON2Q7Z3U7 1717 aa11.94□□□□□ -0.5
USP28-203ENST00000537490 ANKRD24Q8TF21 1146 aa11.94□□□□□ -0.5
USP28-203ENST00000537490 ANO8Q9HCE9 1232 aaPredicted RBP11.94□□□□□ -0.5
USP28-203ENST00000537490 RGPD5Q99666 1765 aa11.94□□□□□ -0.5
USP28-203ENST00000537490 KCNQ2O43526 872 aa11.93□□□□□ -0.5
USP28-203ENST00000537490 TRIM26Q12899 539 aaPredicted RBP11.93□□□□□ -0.5
USP28-203ENST00000537490 ABCC6O95255 1503 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 IL2RBP14784 551 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 FBLN1P23142 703 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 TXNRD1Q16881 649 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 ACSBG1Q96GR2 724 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 SPON1Q9HCB6 807 aa11.92□□□□□ -0.5
USP28-203ENST00000537490 IP6K1Q92551 441 aa11.91□□□□□ -0.5
USP28-203ENST00000537490 PDGFDQ9GZP0 370 aaPredicted RBP11.91□□□□□ -0.5
USP28-203ENST00000537490 TNS2Q63HR2 1409 aa11.91□□□□□ -0.5
USP28-203ENST00000537490 SBF2Q86WG5 1849 aa11.9□□□□□ -0.5
USP28-203ENST00000537490 LTV1Q96GA3 475 aaPredicted RBP11.9□□□□□ -0.5
USP28-203ENST00000537490 WNK3Q9BYP7 1800 aa11.9□□□□□ -0.5
USP28-203ENST00000537490 USP54Q70EL1 1684 aa11.9□□□□□ -0.5
USP28-203ENST00000537490 SLC24A1O60721 1099 aa11.89□□□□□ -0.51
USP28-203ENST00000537490 COG3Q96JB2 828 aa11.89□□□□□ -0.51
USP28-203ENST00000537490 NINLQ9Y2I6 1382 aa11.89□□□□□ -0.51
USP28-203ENST00000537490 MAP3K19Q56UN5 1328 aa11.88□□□□□ -0.51
USP28-203ENST00000537490 STK32BQ9NY57 414 aa11.88□□□□□ -0.51
USP28-203ENST00000537490 PPP1R1BQ9UD71 204 aaPredicted RBP11.88□□□□□ -0.51
USP28-203ENST00000537490 ZBTB7AO95365 584 aa11.87□□□□□ -0.51
USP28-203ENST00000537490 HOXC9P31274 260 aa11.87□□□□□ -0.51
USP28-203ENST00000537490 TMF1P82094 1093 aa11.87□□□□□ -0.51
USP28-203ENST00000537490 SLC15A2Q16348 729 aa11.87□□□□□ -0.51
USP28-203ENST00000537490 FYB1O15117 783 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 AMPHP49418 695 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 DDX54Q8TDD1 881 aaKnown RBP11.86□□□□□ -0.51
USP28-203ENST00000537490 GGNBP2Q9H3C7 697 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 ATF5Q9Y2D1 282 aaPredicted RBP11.86□□□□□ -0.51
USP28-203ENST00000537490 ANKRD36BQ8N2N9 1353 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 USP47Q96K76 1375 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
USP28-203ENST00000537490 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
USP28-203ENST00000537490 LTN1O94822 1766 aa11.85□□□□□ -0.51
USP28-203ENST00000537490 PTGER2P43116 358 aa11.85□□□□□ -0.51
USP28-203ENST00000537490 RRS1Q15050 365 aaKnown RBP11.85□□□□□ -0.51
USP28-203ENST00000537490 LRRC4BQ9NT99 713 aa11.84□□□□□ -0.51
USP28-203ENST00000537490 NBPF6Q5VWK0 638 aa11.83□□□□□ -0.52
USP28-203ENST00000537490 NBPF4Q96M43 638 aa11.83□□□□□ -0.52
USP28-203ENST00000537490 NHSQ6T4R5 1651 aa11.82□□□□□ -0.52
USP28-203ENST00000537490 PRIM1P49642 420 aaKnown RBP11.82□□□□□ -0.52
USP28-203ENST00000537490 ZNF827Q17R98 1081 aa11.82□□□□□ -0.52
USP28-203ENST00000537490 ZCRB1Q8TBF4 217 aaKnown RBP11.82□□□□□ -0.52
USP28-203ENST00000537490 CARD14Q9BXL6 1004 aa11.82□□□□□ -0.52
USP28-203ENST00000537490 CASZ1Q86V15 1759 aa11.82□□□□□ -0.52
USP28-203ENST00000537490 CDCA8Q53HL2 280 aa11.81□□□□□ -0.52
USP28-203ENST00000537490 USHBP1Q8N6Y0 703 aa11.81□□□□□ -0.52
USP28-203ENST00000537490 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
USP28-203ENST00000537490 MTFR1LQ9H019 292 aa11.81□□□□□ -0.52
USP28-203ENST00000537490 HSP90AB2PQ58FF8 381 aa11.8□□□□□ -0.52
USP28-203ENST00000537490 SYTL4Q96C24 671 aaPredicted RBP11.8□□□□□ -0.52
USP28-203ENST00000537490 MEGF6O75095 1541 aa11.8□□□□□ -0.52
USP28-203ENST00000537490 RTL1A6NKG5 1358 aa11.79□□□□□ -0.52
USP28-203ENST00000537490 YY1P25490 414 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms