RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 ITPRIPQ8IWB1 547 aa22.41■■□□□ 1.18
USH1C-205ENST00000527020 TMEM57Q8N5G2 664 aa22.41■■□□□ 1.18
USH1C-205ENST00000527020 ZNF692Q9BU19 519 aaPredicted RBP22.4■■□□□ 1.18
USH1C-205ENST00000527020 HDAC1Q13547 482 aaPredicted RBP22.39■■□□□ 1.18
USH1C-205ENST00000527020 BRPF1P55201 1214 aaPredicted RBP22.39■■□□□ 1.17
USH1C-205ENST00000527020 PTPRUQ92729 1446 aa22.39■■□□□ 1.17
USH1C-205ENST00000527020 ZNF853P0CG23 659 aa22.38■■□□□ 1.17
USH1C-205ENST00000527020 ZBTB40Q9NUA8 1239 aa22.38■■□□□ 1.17
USH1C-205ENST00000527020 NALCNQ8IZF0 1738 aa22.38■■□□□ 1.17
USH1C-205ENST00000527020 IPO8O15397 1037 aaKnown RBP22.37■■□□□ 1.17
USH1C-205ENST00000527020 VAMP4O75379 141 aa22.36■■□□□ 1.17
USH1C-205ENST00000527020 ZNF428Q96B54 188 aa22.36■■□□□ 1.17
USH1C-205ENST00000527020 IFT57Q9NWB7 429 aa22.36■■□□□ 1.17
USH1C-205ENST00000527020 USP35Q9P2H5 1018 aa22.36■■□□□ 1.17
USH1C-205ENST00000527020 TTC21BQ7Z4L5 1316 aa22.35■■□□□ 1.17
USH1C-205ENST00000527020 OVOS2A0A0J9YW53 1432 aa22.35■■□□□ 1.17
USH1C-205ENST00000527020 OVOS2Q6IE36 1432 aa22.35■■□□□ 1.17
USH1C-205ENST00000527020 CEBPAP49715 358 aaPredicted RBP22.35■■□□□ 1.17
USH1C-205ENST00000527020 TSPYL6Q8N831 410 aa22.35■■□□□ 1.17
USH1C-205ENST00000527020 PEAK1Q9H792 1746 aa22.35■■□□□ 1.17
USH1C-205ENST00000527020 CALD1Q05682 793 aaKnown RBP22.35■■□□□ 1.17
USH1C-205ENST00000527020 ACEP12821 1306 aa22.34■■□□□ 1.17
USH1C-205ENST00000527020 PLEKHG3A1L390 1219 aa22.34■■□□□ 1.17
USH1C-205ENST00000527020 GNAI1P63096 354 aa22.34■■□□□ 1.17
USH1C-205ENST00000527020 MBIPQ9NS73 344 aa22.34■■□□□ 1.17
USH1C-205ENST00000527020 DAXXQ9UER7 740 aaPredicted RBP22.33■■□□□ 1.17
USH1C-205ENST00000527020 SLIT1O75093 1534 aa22.33■■□□□ 1.17
USH1C-205ENST00000527020 SMC5Q8IY18 1101 aa22.33■■□□□ 1.16
USH1C-205ENST00000527020 MRPL50Q8N5N7 158 aaKnown RBP22.33■■□□□ 1.16
USH1C-205ENST00000527020 USP6P35125 1406 aa22.33■■□□□ 1.16
USH1C-205ENST00000527020 PTCH1Q13635 1447 aa22.32■■□□□ 1.16
USH1C-205ENST00000527020 ARHGAP23Q9P227 1491 aa22.32■■□□□ 1.16
USH1C-205ENST00000527020 RGPD1P0DJD0 1748 aa22.32■■□□□ 1.16
USH1C-205ENST00000527020 SLC26A8Q96RN1 970 aa22.31■■□□□ 1.16
USH1C-205ENST00000527020 PIK3R4Q99570 1358 aa22.3■■□□□ 1.16
USH1C-205ENST00000527020 SSH2Q76I76 1423 aa22.3■■□□□ 1.16
USH1C-205ENST00000527020 NUTM2FA1L443 756 aa22.3■■□□□ 1.16
USH1C-205ENST00000527020 FAM83GA6ND36 823 aa22.3■■□□□ 1.16
USH1C-205ENST00000527020 EIF4A2Q14240 407 aaKnown RBP22.3■■□□□ 1.16
USH1C-205ENST00000527020 CFAP44Q96MT7 982 aa22.3■■□□□ 1.16
USH1C-205ENST00000527020 RGPD8O14715 1765 aaPredicted RBP22.3■■□□□ 1.16
USH1C-205ENST00000527020 LMOD3Q0VAK6 560 aa22.29■■□□□ 1.16
USH1C-205ENST00000527020 AEBP1Q8IUX7 1158 aa22.29■■□□□ 1.16
USH1C-205ENST00000527020 FER1L4A9Z1Z3 1794 aa22.28■■□□□ 1.16
USH1C-205ENST00000527020 ARHGAP45Q92619 1136 aa22.28■■□□□ 1.16
USH1C-205ENST00000527020 USP31Q70CQ4 1352 aa22.28■■□□□ 1.16
USH1C-205ENST00000527020 DCTN1Q14203 1278 aa22.27■■□□□ 1.16
USH1C-205ENST00000527020 C8orf58Q8NAV2 365 aa22.27■■□□□ 1.16
USH1C-205ENST00000527020 TBC1D32Q96NH3 1257 aa22.27■■□□□ 1.16
USH1C-205ENST00000527020 ELL2O00472 640 aaPredicted RBP22.26■■□□□ 1.15
USH1C-205ENST00000527020 NFKBIBQ15653 356 aa22.26■■□□□ 1.15
USH1C-205ENST00000527020 FMN2Q9NZ56 1722 aa22.26■■□□□ 1.15
USH1C-205ENST00000527020 ZBTB7BO15156 539 aaPredicted RBP22.25■■□□□ 1.15
USH1C-205ENST00000527020 TWISTNBQ3B726 338 aaPredicted RBP22.25■■□□□ 1.15
USH1C-205ENST00000527020 AMOTL2Q9Y2J4 779 aa22.25■■□□□ 1.15
USH1C-205ENST00000527020 EID1Q9Y6B2 187 aa22.25■■□□□ 1.15
USH1C-205ENST00000527020 SULT6B1Q6IMI4 303 aa22.25■■□□□ 1.15
USH1C-205ENST00000527020 BCL11AQ9H165 835 aa22.25■■□□□ 1.15
USH1C-205ENST00000527020 ABCC4O15439 1325 aa22.24■■□□□ 1.15
USH1C-205ENST00000527020 DIP2AQ14689 1571 aa22.24■■□□□ 1.15
USH1C-205ENST00000527020 TBX22Q9Y458 520 aa22.23■■□□□ 1.15
USH1C-205ENST00000527020 NUCB1Q02818 461 aa22.22■■□□□ 1.15
USH1C-205ENST00000527020 HSP90AB2PQ58FF8 381 aa22.22■■□□□ 1.15
USH1C-205ENST00000527020 XRN1Q8IZH2 1706 aaKnown RBP22.22■■□□□ 1.15
USH1C-205ENST00000527020 RIMS1Q86UR5 1692 aaKnown RBP22.22■■□□□ 1.15
USH1C-205ENST00000527020 UPF2Q9HAU5 1272 aaKnown RBP22.21■■□□□ 1.15
USH1C-205ENST00000527020 DNAJC5Q9H3Z4 198 aa22.2■■□□□ 1.14
USH1C-205ENST00000527020 PIK3C2AO00443 1686 aa22.19■■□□□ 1.14
USH1C-205ENST00000527020 C1orf115Q9H7X2 142 aa22.18■■□□□ 1.14
USH1C-205ENST00000527020 TTC21AQ8NDW8 1320 aa22.18■■□□□ 1.14
USH1C-205ENST00000527020 BECN1Q14457 450 aa22.17■■□□□ 1.14
USH1C-205ENST00000527020 PLPPR3Q6T4P5 718 aa22.17■■□□□ 1.14
USH1C-205ENST00000527020 CHD1LQ86WJ1 897 aa22.16■■□□□ 1.14
USH1C-205ENST00000527020 SIRT2Q8IXJ6 389 aa22.16■■□□□ 1.14
USH1C-205ENST00000527020 LNPKQ9C0E8 428 aa22.16■■□□□ 1.14
USH1C-205ENST00000527020 MAP3K19Q56UN5 1328 aa22.16■■□□□ 1.14
USH1C-205ENST00000527020 CHL1O00533 1208 aa22.16■■□□□ 1.14
USH1C-205ENST00000527020 MARF1Q9Y4F3 1742 aaKnown RBP22.15■■□□□ 1.14
USH1C-205ENST00000527020 SOX12O15370 315 aa22.15■■□□□ 1.14
USH1C-205ENST00000527020 MCM10Q7L590 875 aa22.15■■□□□ 1.14
USH1C-205ENST00000527020 CHMP4BQ9H444 224 aaKnown RBP22.15■■□□□ 1.14
USH1C-205ENST00000527020 ARHGEF10O15013 1369 aa22.15■■□□□ 1.14
USH1C-205ENST00000527020 KRT24Q2M2I5 525 aa22.15■■□□□ 1.14
USH1C-205ENST00000527020 API5Q9BZZ5 524 aaKnown RBP22.15■■□□□ 1.14
USH1C-205ENST00000527020 CRB1P82279 1406 aa22.14■■□□□ 1.13
USH1C-205ENST00000527020 THEMISQ8N1K5 641 aaPredicted RBP22.14■■□□□ 1.13
USH1C-205ENST00000527020 RGS12O14924 1447 aa22.13■■□□□ 1.13
USH1C-205ENST00000527020 SBNO1A3KN83 1393 aa22.13■■□□□ 1.13
USH1C-205ENST00000527020 FRAT2O75474 233 aaPredicted RBP22.12■■□□□ 1.13
USH1C-205ENST00000527020 GCC1Q96CN9 775 aa22.12■■□□□ 1.13
USH1C-205ENST00000527020 TBC1D2Q9BYX2 928 aa22.12■■□□□ 1.13
USH1C-205ENST00000527020 FLT4P35916 1363 aa22.12■■□□□ 1.13
USH1C-205ENST00000527020 KIF24Q5T7B8 1368 aa22.12■■□□□ 1.13
USH1C-205ENST00000527020 KIAA0232Q92628 1395 aa22.12■■□□□ 1.13
USH1C-205ENST00000527020 MFAP1P55081 439 aaKnown RBP22.11■■□□□ 1.13
USH1C-205ENST00000527020 C22orf23Q9BZE7 217 aa22.11■■□□□ 1.13
USH1C-205ENST00000527020 KDRP35968 1356 aa22.11■■□□□ 1.13
USH1C-205ENST00000527020 NGDNQ8NEJ9 315 aaKnown RBP22.11■■□□□ 1.13
USH1C-205ENST00000527020 ANTXR1Q9H6X2 564 aa22.11■■□□□ 1.13
USH1C-205ENST00000527020 CEP170BQ9Y4F5 1589 aaPredicted RBP22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms