RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 COL22A1Q8NFW1 1626 aaPredicted RBP11.45□□□□□ -0.58
VAPB-206ENST00000520497 USP19O94966 1318 aa11.44□□□□□ -0.58
VAPB-206ENST00000520497 SOS2Q07890 1332 aaPredicted RBP11.44□□□□□ -0.58
VAPB-206ENST00000520497 PAK3O75914 559 aaPredicted RBP11.44□□□□□ -0.58
VAPB-206ENST00000520497 NLRP6P59044 892 aa11.44□□□□□ -0.58
VAPB-206ENST00000520497 DLG5Q8TDM6 1919 aa11.43□□□□□ -0.58
VAPB-206ENST00000520497 FBLN1P23142 703 aa11.43□□□□□ -0.58
VAPB-206ENST00000520497 FAM9BQ8IZU0 186 aa11.43□□□□□ -0.58
VAPB-206ENST00000520497 ARHGEF10O15013 1369 aa11.42□□□□□ -0.58
VAPB-206ENST00000520497 KIF24Q5T7B8 1368 aa11.42□□□□□ -0.58
VAPB-206ENST00000520497 SPATA31A3Q5VYP0 1347 aa11.42□□□□□ -0.58
VAPB-206ENST00000520497 MEX3CQ5U5Q3 659 aaKnown RBP11.42□□□□□ -0.58
VAPB-206ENST00000520497 EMILIN1Q9Y6C2 1016 aa11.42□□□□□ -0.58
VAPB-206ENST00000520497 SPATA31A6Q5VVP1 1343 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 ABCC6O95255 1503 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 FAM208AQ9UK61 1670 aaKnown RBP11.41□□□□□ -0.58
VAPB-206ENST00000520497 CAMTA1Q9Y6Y1 1673 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 RRS1Q15050 365 aaKnown RBP11.41□□□□□ -0.58
VAPB-206ENST00000520497 NUTM2GQ5VZR2 741 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 CFAP53Q96M91 514 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 RTL1A6NKG5 1358 aa11.41□□□□□ -0.58
VAPB-206ENST00000520497 MAP3K19Q56UN5 1328 aa11.4□□□□□ -0.58
VAPB-206ENST00000520497 FLT4P35916 1363 aa11.4□□□□□ -0.59
VAPB-206ENST00000520497 WDR43Q15061 677 aaKnown RBP eCLIP11.39□□□□□ -0.59
VAPB-206ENST00000520497 ADAMTS8Q9UP79 889 aa11.39□□□□□ -0.59
VAPB-206ENST00000520497 VIRMAQ69YN4 1812 aaKnown RBP11.39□□□□□ -0.59
VAPB-206ENST00000520497 LMO7Q8WWI1 1683 aa11.39□□□□□ -0.59
VAPB-206ENST00000520497 KCNH5Q8NCM2 988 aa11.38□□□□□ -0.59
VAPB-206ENST00000520497 AFF2P51816 1311 aa11.37□□□□□ -0.59
VAPB-206ENST00000520497 DIAPH1O60610 1272 aaKnown RBP11.37□□□□□ -0.59
VAPB-206ENST00000520497 GCP02774 474 aa11.37□□□□□ -0.59
VAPB-206ENST00000520497 PPM1GO15355 546 aaPredicted RBP11.36□□□□□ -0.59
VAPB-206ENST00000520497 SOX12O15370 315 aa11.36□□□□□ -0.59
VAPB-206ENST00000520497 ADAMTS2O95450 1211 aa11.36□□□□□ -0.59
VAPB-206ENST00000520497 IL13P35225 146 aa11.36□□□□□ -0.59
VAPB-206ENST00000520497 HNRNPUQ00839 825 aaKnown RBP eCLIP11.36□□□□□ -0.59
VAPB-206ENST00000520497 LMOD2Q6P5Q4 547 aa11.36□□□□□ -0.59
VAPB-206ENST00000520497 C8orf37Q96NL8 207 aa11.36□□□□□ -0.59
VAPB-206ENST00000520497 HOXC9P31274 260 aa11.35□□□□□ -0.59
VAPB-206ENST00000520497 ARHGEF25Q86VW2 580 aa11.35□□□□□ -0.59
VAPB-206ENST00000520497 LRRC59Q96AG4 307 aaKnown RBP11.35□□□□□ -0.59
VAPB-206ENST00000520497 NUDCQ9Y266 331 aa11.35□□□□□ -0.59
VAPB-206ENST00000520497 CPDO75976 1380 aa11.35□□□□□ -0.59
VAPB-206ENST00000520497 ZBED9Q6R2W3 1325 aa11.35□□□□□ -0.59
VAPB-206ENST00000520497 EIF4A2Q14240 407 aaKnown RBP11.34□□□□□ -0.59
VAPB-206ENST00000520497 HSP90AB2PQ58FF8 381 aa11.34□□□□□ -0.59
VAPB-206ENST00000520497 ZNF772Q68DY9 489 aaPredicted RBP11.34□□□□□ -0.59
VAPB-206ENST00000520497 UPF1Q92900 1129 aaKnown RBP eCLIP11.34□□□□□ -0.591e-26■■■■■ 39
VAPB-206ENST00000520497 COL14A1Q05707 1796 aaKnown RBP11.33□□□□□ -0.59
VAPB-206ENST00000520497 PLCH1Q4KWH8 1693 aa11.33□□□□□ -0.6
VAPB-206ENST00000520497 AMPHP49418 695 aa11.33□□□□□ -0.6
VAPB-206ENST00000520497 IP6K1Q92551 441 aa11.33□□□□□ -0.6
VAPB-206ENST00000520497 NCAPD2Q15021 1401 aa11.33□□□□□ -0.6
VAPB-206ENST00000520497 U2AF1L5P0DN76 240 aaPredicted RBP11.32□□□□□ -0.6
VAPB-206ENST00000520497 RXRBP28702 533 aa11.32□□□□□ -0.6
VAPB-206ENST00000520497 U2AF1Q01081 240 aaKnown RBP eCLIP11.32□□□□□ -0.6
VAPB-206ENST00000520497 CABLES1Q8TDN4 633 aa11.32□□□□□ -0.6
VAPB-206ENST00000520497 KDRP35968 1356 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 WNK3Q9BYP7 1800 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 U2SURPO15042 1029 aaKnown RBP11.31□□□□□ -0.6
VAPB-206ENST00000520497 RUNDC1Q96C34 613 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 PLEKHF1Q96S99 279 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 QTRT2Q9H974 415 aaKnown RBP11.31□□□□□ -0.6
VAPB-206ENST00000520497 RGS12O14924 1447 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 NRAPQ86VF7 1730 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 NWD2Q9ULI1 1742 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 IGSF1Q8N6C5 1336 aa11.31□□□□□ -0.6
VAPB-206ENST00000520497 KIAA0232Q92628 1395 aa11.3□□□□□ -0.6
VAPB-206ENST00000520497 FCHSD2O94868 740 aa11.3□□□□□ -0.6
VAPB-206ENST00000520497 CCDC146Q8IYE0 955 aa11.3□□□□□ -0.6
VAPB-206ENST00000520497 NGLY1Q96IV0 654 aa11.3□□□□□ -0.6
VAPB-206ENST00000520497 RSPH6AQ9H0K4 717 aa11.3□□□□□ -0.6
VAPB-206ENST00000520497 ZC3H6P61129 1189 aaKnown RBP11.29□□□□□ -0.6
VAPB-206ENST00000520497 U3KPZ7 1027 aaPredicted RBP11.29□□□□□ -0.6
VAPB-206ENST00000520497 PKD1L3Q7Z443 1732 aa11.29□□□□□ -0.6
VAPB-206ENST00000520497 PARP4Q9UKK3 1724 aaKnown RBP11.29□□□□□ -0.6
VAPB-206ENST00000520497 PLEKHG5O94827 1062 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 NGEFQ8N5V2 710 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 EYA1Q99502 592 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 AXIN2Q9Y2T1 843 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 ERBB3P21860 1342 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 ZNF521Q96K83 1311 aa11.28□□□□□ -0.6
VAPB-206ENST00000520497 COL5A2P05997 1499 aaPredicted RBP11.27□□□□□ -0.6
VAPB-206ENST00000520497 APAF1O14727 1248 aa11.27□□□□□ -0.61
VAPB-206ENST00000520497 PNNQ9H307 717 aaKnown RBP11.27□□□□□ -0.61
VAPB-206ENST00000520497 SHANK3Q9BYB0 1731 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 SENP3-EIF4A1A0A087X0R7 540 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 HMOX1P09601 288 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 PRKAR2BP31323 418 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 RBM6P78332 1123 aaKnown RBP11.26□□□□□ -0.61
VAPB-206ENST00000520497 AEBP1Q8IUX7 1158 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 TCP11L2Q8N4U5 519 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 USP21Q9UK80 565 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 LRRC37A3O60309 1634 aa11.26□□□□□ -0.61
VAPB-206ENST00000520497 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
VAPB-206ENST00000520497 ZBTB7CA1YPR0 619 aa11.25□□□□□ -0.61
VAPB-206ENST00000520497 SULT6B1Q6IMI4 303 aa11.25□□□□□ -0.61
VAPB-206ENST00000520497 ANKRD24Q8TF21 1146 aa11.25□□□□□ -0.61
VAPB-206ENST00000520497 PRDM11Q9NQV5 511 aa11.25□□□□□ -0.61
VAPB-206ENST00000520497 SCN11AQ9UI33 1791 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms