RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 PLEKHG5O94827 1062 aa20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 PIP4K2BP78356 416 aa20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 NHSL1Q5SYE7 1610 aa20.9■□□□□ 0.94
SQSTM1-213ENST00000510187 ARHGEF10O15013 1369 aa20.88■□□□□ 0.93
SQSTM1-213ENST00000510187 MAP2P11137 1827 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-213ENST00000510187 KCNH5Q8NCM2 988 aa20.87■□□□□ 0.93
SQSTM1-213ENST00000510187 CRBNQ96SW2 442 aa20.87■□□□□ 0.93
SQSTM1-213ENST00000510187 USP19O94966 1318 aa20.87■□□□□ 0.93
SQSTM1-213ENST00000510187 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.87■□□□□ 0.93
SQSTM1-213ENST00000510187 SHPRHQ149N8 1683 aa20.86■□□□□ 0.93
SQSTM1-213ENST00000510187 TRMT2AQ8IZ69 625 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-213ENST00000510187 PNPLA6Q8IY17 1366 aa20.86■□□□□ 0.93
SQSTM1-213ENST00000510187 MAP3K19Q56UN5 1328 aa20.85■□□□□ 0.93
SQSTM1-213ENST00000510187 GCP02774 474 aa20.85■□□□□ 0.93
SQSTM1-213ENST00000510187 SLFN5Q08AF3 891 aa20.85■□□□□ 0.93
SQSTM1-213ENST00000510187 PLIN1O60240 522 aa20.84■□□□□ 0.93
SQSTM1-213ENST00000510187 CDK12Q9NYV4 1490 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-213ENST00000510187 SLIT3O75094 1523 aa20.84■□□□□ 0.93
SQSTM1-213ENST00000510187 AHDC1Q5TGY3 1603 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-213ENST00000510187 COL3A1P02461 1466 aaPredicted RBP20.83■□□□□ 0.92
SQSTM1-213ENST00000510187 DIAPH1O60610 1272 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-213ENST00000510187 AMPHP49418 695 aa20.82■□□□□ 0.92
SQSTM1-213ENST00000510187 NFAT5O94916 1531 aa20.82■□□□□ 0.92
SQSTM1-213ENST00000510187 MED1Q15648 1581 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-213ENST00000510187 PDE4AP27815 886 aa20.81■□□□□ 0.92
SQSTM1-213ENST00000510187 CABLES1Q8TDN4 633 aa20.81■□□□□ 0.92
SQSTM1-213ENST00000510187 LRRC59Q96AG4 307 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-213ENST00000510187 BACH2Q9BYV9 841 aa20.81■□□□□ 0.92
SQSTM1-213ENST00000510187 FLT4P35916 1363 aa20.8■□□□□ 0.92
SQSTM1-213ENST00000510187 KDM2BQ8NHM5 1336 aa20.8■□□□□ 0.92
SQSTM1-213ENST00000510187 PEAK1Q9H792 1746 aa20.79■□□□□ 0.92
SQSTM1-213ENST00000510187 ZBTB7CA1YPR0 619 aa20.79■□□□□ 0.92
SQSTM1-213ENST00000510187 E9PSI1 815 aa20.79■□□□□ 0.92
SQSTM1-213ENST00000510187 HSP90AB2PQ58FF8 381 aa20.79■□□□□ 0.92
SQSTM1-213ENST00000510187 KIF24Q5T7B8 1368 aa20.79■□□□□ 0.92
SQSTM1-213ENST00000510187 ZBTB47Q9UFB7 747 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-213ENST00000510187 U2SURPO15042 1029 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-213ENST00000510187 CENPQQ7L2Z9 268 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-213ENST00000510187 U2AF1L5P0DN76 240 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-213ENST00000510187 HOXC9P31274 260 aa20.77■□□□□ 0.92
SQSTM1-213ENST00000510187 U2AF1Q01081 240 aaKnown RBP eCLIP20.77■□□□□ 0.922e-7■□□□□ 8.7
SQSTM1-213ENST00000510187 ARHGEF25Q86VW2 580 aa20.77■□□□□ 0.92
SQSTM1-213ENST00000510187 IL13P35225 146 aa20.76■□□□□ 0.91
SQSTM1-213ENST00000510187 ZC3H6P61129 1189 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-213ENST00000510187 RTL1A6NKG5 1358 aa20.76■□□□□ 0.91
SQSTM1-213ENST00000510187 PHLPP1O60346 1717 aa20.76■□□□□ 0.91
SQSTM1-213ENST00000510187 PHRF1Q9P1Y6 1649 aaKnown RBP20.76■□□□□ 0.91
SQSTM1-213ENST00000510187 APAF1O14727 1248 aa20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 HAP1P54257 671 aaPredicted RBP20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 C20orf194Q5TEA3 1177 aa20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 LTN1O94822 1766 aa20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 EIF4A2Q14240 407 aaKnown RBP20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 IP6K1Q92551 441 aa20.75■□□□□ 0.91
SQSTM1-213ENST00000510187 CCDC146Q8IYE0 955 aa20.74■□□□□ 0.91
SQSTM1-213ENST00000510187 CRYBG1Q9Y4K1 1723 aa20.74■□□□□ 0.91
SQSTM1-213ENST00000510187 COL16A1Q07092 1604 aaPredicted RBP20.73■□□□□ 0.91
SQSTM1-213ENST00000510187 CPDO75976 1380 aa20.7■□□□□ 0.9
SQSTM1-213ENST00000510187 KIAA0232Q92628 1395 aa20.7■□□□□ 0.9
SQSTM1-213ENST00000510187 NCBP3Q53F19 620 aaKnown RBP20.7■□□□□ 0.9
SQSTM1-213ENST00000510187 LTV1Q96GA3 475 aaPredicted RBP20.7■□□□□ 0.9
SQSTM1-213ENST00000510187 HMOX1P09601 288 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 CHRNA2Q15822 529 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 PRDM11Q9NQV5 511 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 AXIN2Q9Y2T1 843 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 ABCA3Q99758 1704 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 RUNDC1Q96C34 613 aa20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 SPINK5Q9NQ38 1064 aaPredicted RBP20.67■□□□□ 0.9
SQSTM1-213ENST00000510187 COL22A1Q8NFW1 1626 aaPredicted RBP20.66■□□□□ 0.9
SQSTM1-213ENST00000510187 FCHSD2O94868 740 aa20.66■□□□□ 0.9
SQSTM1-213ENST00000510187 PNNQ9H307 717 aaKnown RBP20.66■□□□□ 0.9
SQSTM1-213ENST00000510187 DDRGK1Q96HY6 314 aa20.65■□□□□ 0.9
SQSTM1-213ENST00000510187 PDE3AQ14432 1141 aa20.64■□□□□ 0.9
SQSTM1-213ENST00000510187 SULT6B1Q6IMI4 303 aa20.64■□□□□ 0.9
SQSTM1-213ENST00000510187 WWC1Q8IX03 1113 aa20.64■□□□□ 0.9
SQSTM1-213ENST00000510187 EYA1Q99502 592 aa20.64■□□□□ 0.9
SQSTM1-213ENST00000510187 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.9
SQSTM1-213ENST00000510187 ANKRD24Q8TF21 1146 aa20.64■□□□□ 0.89
SQSTM1-213ENST00000510187 PHF23Q9BUL5 403 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-213ENST00000510187 PRKAR2BP31323 418 aa20.63■□□□□ 0.89
SQSTM1-213ENST00000510187 PLEKHF1Q96S99 279 aa20.63■□□□□ 0.89
SQSTM1-213ENST00000510187 CCDC27Q2M243 656 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 NPM2Q86SE8 214 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 AEBP1Q8IUX7 1158 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 ABCC6O95255 1503 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 IGSF1Q8N6C5 1336 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 MAPK8IP3Q9UPT6 1336 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 RGPD1P0DJD0 1748 aa20.62■□□□□ 0.89
SQSTM1-213ENST00000510187 ERBB3P21860 1342 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 COL18A1P39060 1754 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 JCADQ9P266 1359 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 NEFMP07197 916 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 HSPA1LP34931 641 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 WDR63Q8IWG1 891 aa20.61■□□□□ 0.89
SQSTM1-213ENST00000510187 AAMPQ13685 434 aa20.6■□□□□ 0.89
SQSTM1-213ENST00000510187 TCP11L2Q8N4U5 519 aa20.6■□□□□ 0.89
SQSTM1-213ENST00000510187 FAM83GA6ND36 823 aa20.59■□□□□ 0.89
SQSTM1-213ENST00000510187 NBPF6Q5VWK0 638 aa20.59■□□□□ 0.89
SQSTM1-213ENST00000510187 NBPF4Q96M43 638 aa20.59■□□□□ 0.89
SQSTM1-213ENST00000510187 NUTM2BA6NNL0 878 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-213ENST00000510187 NUTM2EB1AL46 878 aaPredicted RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms