RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 CLSPNQ9HAW4 1339 aa20.3■□□□□ 0.84
HMGCS1-203ENST00000507004 EN1Q05925 392 aaPredicted RBP20.3■□□□□ 0.84
HMGCS1-203ENST00000507004 FAM182BQ5T319 152 aa20.3■□□□□ 0.84
HMGCS1-203ENST00000507004 COL18A1P39060 1754 aa20.29■□□□□ 0.84
HMGCS1-203ENST00000507004 TRIM37O94972 964 aa20.29■□□□□ 0.84
HMGCS1-203ENST00000507004 CSB-PGBD3P0DP91 1061 aa20.28■□□□□ 0.84
HMGCS1-203ENST00000507004 DDB1Q16531 1140 aa20.28■□□□□ 0.84
HMGCS1-203ENST00000507004 CARD10Q9BWT7 1032 aa20.28■□□□□ 0.84
HMGCS1-203ENST00000507004 SLC12A5Q9H2X9 1139 aa20.28■□□□□ 0.84
HMGCS1-203ENST00000507004 USP54Q70EL1 1684 aa20.28■□□□□ 0.84
HMGCS1-203ENST00000507004 CD163L1Q9NR16 1453 aa20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 CCDC7Q96M83 1385 aa20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 ST20-MTHFSA0A0A6YYL1 179 aa20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 APBA3O96018 575 aa20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 TESK2Q96S53 571 aa20.27■□□□□ 0.84
HMGCS1-203ENST00000507004 TNS1Q9HBL0 1735 aaKnown RBP20.27■□□□□ 0.83
HMGCS1-203ENST00000507004 NFAT5O94916 1531 aa20.27■□□□□ 0.83
HMGCS1-203ENST00000507004 OVOS2A0A0G2JMS6 1433 aa20.27■□□□□ 0.83
HMGCS1-203ENST00000507004 OVOS2A0A0J9YW53 1432 aa20.27■□□□□ 0.83
HMGCS1-203ENST00000507004 OVOS2Q6IE36 1432 aa20.27■□□□□ 0.83
HMGCS1-203ENST00000507004 AXIN2Q9Y2T1 843 aa20.26■□□□□ 0.83
HMGCS1-203ENST00000507004 SOX12O15370 315 aa20.25■□□□□ 0.83
HMGCS1-203ENST00000507004 CDCA8Q53HL2 280 aa20.25■□□□□ 0.83
HMGCS1-203ENST00000507004 CAMKK2Q96RR4 588 aa20.25■□□□□ 0.83
HMGCS1-203ENST00000507004 A0A1W2PP64 1363 aa20.24■□□□□ 0.83
HMGCS1-203ENST00000507004 TMF1P82094 1093 aa20.24■□□□□ 0.83
HMGCS1-203ENST00000507004 NME9Q86XW9 330 aa20.23■□□□□ 0.83
HMGCS1-203ENST00000507004 BCL9O00512 1426 aa20.22■□□□□ 0.83
HMGCS1-203ENST00000507004 EZH2Q15910 746 aaKnown RBP20.22■□□□□ 0.83
HMGCS1-203ENST00000507004 NBPF14Q5TI25 921 aa20.21■□□□□ 0.83
HMGCS1-203ENST00000507004 USP47Q96K76 1375 aa20.21■□□□□ 0.83
HMGCS1-203ENST00000507004 EXOC5O00471 708 aa20.2■□□□□ 0.82
HMGCS1-203ENST00000507004 ERBB3P21860 1342 aa20.2■□□□□ 0.82
HMGCS1-203ENST00000507004 LRRC37A3O60309 1634 aa20.19■□□□□ 0.82
HMGCS1-203ENST00000507004 LRP5O75197 1615 aa20.19■□□□□ 0.82
HMGCS1-203ENST00000507004 ANKRD36BQ8N2N9 1353 aa20.19■□□□□ 0.82
HMGCS1-203ENST00000507004 PLSCR1O15162 318 aa20.18■□□□□ 0.82
HMGCS1-203ENST00000507004 COG3Q96JB2 828 aa20.18■□□□□ 0.82
HMGCS1-203ENST00000507004 PSDA5PKW4 1024 aaPredicted RBP20.17■□□□□ 0.82
HMGCS1-203ENST00000507004 BCL11BQ9C0K0 894 aaPredicted RBP20.17■□□□□ 0.82
HMGCS1-203ENST00000507004 WNK3Q9BYP7 1800 aa20.17■□□□□ 0.82
HMGCS1-203ENST00000507004 R3HDM1Q15032 1099 aaKnown RBP20.16■□□□□ 0.82
HMGCS1-203ENST00000507004 PEAK1Q9H792 1746 aa20.16■□□□□ 0.82
HMGCS1-203ENST00000507004 RGPD5Q99666 1765 aa20.16■□□□□ 0.82
HMGCS1-203ENST00000507004 NLRP2Q9NX02 1062 aa20.15■□□□□ 0.82
HMGCS1-203ENST00000507004 TNS2Q63HR2 1409 aa20.14■□□□□ 0.81
HMGCS1-203ENST00000507004 IP6K1Q92551 441 aa20.14■□□□□ 0.81
HMGCS1-203ENST00000507004 RGPD3A6NKT7 1758 aaPredicted RBP20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 LTN1O94822 1766 aa20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 RGPD4Q7Z3J3 1758 aa20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 IL2RBP14784 551 aa20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 MARCH10Q8NA82 808 aaPredicted RBP20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 ANKRD24Q8TF21 1146 aa20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 RREB1Q92766 1687 aa20.13■□□□□ 0.81
HMGCS1-203ENST00000507004 SBF2Q86WG5 1849 aa20.1■□□□□ 0.81
HMGCS1-203ENST00000507004 AMPHP49418 695 aa20.09■□□□□ 0.81
HMGCS1-203ENST00000507004 PCGF6Q9BYE7 350 aa20.09■□□□□ 0.81
HMGCS1-203ENST00000507004 FAM208AQ9UK61 1670 aaKnown RBP20.09■□□□□ 0.81
HMGCS1-203ENST00000507004 RTL1A6NKG5 1358 aa20.08■□□□□ 0.81
HMGCS1-203ENST00000507004 NUP188Q5SRE5 1749 aa20.07■□□□□ 0.8
HMGCS1-203ENST00000507004 MAP3K19Q56UN5 1328 aa20.06■□□□□ 0.8
HMGCS1-203ENST00000507004 KIF24Q5T7B8 1368 aa20.06■□□□□ 0.8
HMGCS1-203ENST00000507004 FYB1O15117 783 aa20.05■□□□□ 0.8
HMGCS1-203ENST00000507004 HOXC9P31274 260 aa20.05■□□□□ 0.8
HMGCS1-203ENST00000507004 SRCAPQ6ZRS2 3230 aa20.03■□□□□ 0.8
HMGCS1-203ENST00000507004 SMG6Q86US8 1419 aaKnown RBP20.02■□□□□ 0.8
HMGCS1-203ENST00000507004 CGNL1Q0VF96 1302 aa20.02■□□□□ 0.79
HMGCS1-203ENST00000507004 LTV1Q96GA3 475 aaPredicted RBP20.01■□□□□ 0.79
HMGCS1-203ENST00000507004 GGNBP2Q9H3C7 697 aa20.01■□□□□ 0.79
HMGCS1-203ENST00000507004 SPON1Q9HCB6 807 aa20.01■□□□□ 0.79
HMGCS1-203ENST00000507004 TXNRD1Q16881 649 aa20■□□□□ 0.79
HMGCS1-203ENST00000507004 NHSQ6T4R5 1651 aa20■□□□□ 0.79
HMGCS1-203ENST00000507004 STK32BQ9NY57 414 aa19.99■□□□□ 0.79
HMGCS1-203ENST00000507004 EIF4G2P78344 907 aaKnown RBP eCLIP19.98■□□□□ 0.79
HMGCS1-203ENST00000507004 CCER1Q8TC90 406 aaPredicted RBP19.98■□□□□ 0.79
HMGCS1-203ENST00000507004 INSRP06213 1382 aa19.97■□□□□ 0.79
HMGCS1-203ENST00000507004 FLT4P35916 1363 aa19.97■□□□□ 0.79
HMGCS1-203ENST00000507004 KCNQ2O43526 872 aa19.97■□□□□ 0.79
HMGCS1-203ENST00000507004 HMGB2P26583 209 aaKnown RBP19.96■□□□□ 0.79
HMGCS1-203ENST00000507004 RRS1Q15050 365 aaKnown RBP19.96■□□□□ 0.79
HMGCS1-203ENST00000507004 PTF1AQ7RTS3 328 aa19.96■□□□□ 0.79
HMGCS1-203ENST00000507004 PROM2Q8N271 834 aa19.96■□□□□ 0.79
HMGCS1-203ENST00000507004 KIF20BQ96Q89 1820 aa19.96■□□□□ 0.79
HMGCS1-203ENST00000507004 NSD3Q9BZ95 1437 aa19.95■□□□□ 0.78
HMGCS1-203ENST00000507004 ZCRB1Q8TBF4 217 aaKnown RBP19.95■□□□□ 0.78
HMGCS1-203ENST00000507004 RAPGEF4Q8WZA2 1011 aa19.95■□□□□ 0.78
HMGCS1-203ENST00000507004 ACSBG1Q96GR2 724 aa19.95■□□□□ 0.78
HMGCS1-203ENST00000507004 DDX54Q8TDD1 881 aaKnown RBP19.94■□□□□ 0.78
HMGCS1-203ENST00000507004 PPP1R1BQ9UD71 204 aaPredicted RBP19.94■□□□□ 0.78
HMGCS1-203ENST00000507004 SLC15A2Q16348 729 aa19.93■□□□□ 0.78
HMGCS1-203ENST00000507004 CARD14Q9BXL6 1004 aa19.93■□□□□ 0.78
HMGCS1-203ENST00000507004 ANO8Q9HCE9 1232 aaPredicted RBP19.93■□□□□ 0.78
HMGCS1-203ENST00000507004 KAT6BQ8WYB5 2073 aa19.93■□□□□ 0.78
HMGCS1-203ENST00000507004 MYOM1P52179 1685 aa19.92■□□□□ 0.78
HMGCS1-203ENST00000507004 TATP17735 454 aaPredicted RBP19.92■□□□□ 0.78
HMGCS1-203ENST00000507004 FBLN1P23142 703 aa19.92■□□□□ 0.78
HMGCS1-203ENST00000507004 SLC27A3Q5K4L6 730 aa19.92■□□□□ 0.78
HMGCS1-203ENST00000507004 NBPF6Q5VWK0 638 aa19.91■□□□□ 0.78
HMGCS1-203ENST00000507004 NBPF4Q96M43 638 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms