RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 PHACTR3Q96KR7 559 aa14.11□□□□□ -0.15
CMSS1-208ENST00000496116 NRKQ7Z2Y5 1582 aa14.1□□□□□ -0.15
CMSS1-208ENST00000496116 RRS1Q15050 365 aaKnown RBP14.1□□□□□ -0.15
CMSS1-208ENST00000496116 SLIT1O75093 1534 aa14.1□□□□□ -0.15
CMSS1-208ENST00000496116 PLEKHG3A1L390 1219 aa14.09□□□□□ -0.15
CMSS1-208ENST00000496116 IFT57Q9NWB7 429 aa14.09□□□□□ -0.15
CMSS1-208ENST00000496116 LAS1LQ9Y4W2 734 aaKnown RBP14.09□□□□□ -0.15
CMSS1-208ENST00000496116 CEBPAP49715 358 aaPredicted RBP14.09□□□□□ -0.15
CMSS1-208ENST00000496116 BRPF1P55201 1214 aaPredicted RBP14.09□□□□□ -0.15
CMSS1-208ENST00000496116 ACEP12821 1306 aa14.09□□□□□ -0.15
CMSS1-208ENST00000496116 TTC21BQ7Z4L5 1316 aa14.09□□□□□ -0.15
CMSS1-208ENST00000496116 PDZRN3Q9UPQ7 1066 aa14.08□□□□□ -0.16
CMSS1-208ENST00000496116 FER1L4A9Z1Z3 1794 aa14.08□□□□□ -0.16
CMSS1-208ENST00000496116 SLC26A8Q96RN1 970 aa14.08□□□□□ -0.16
CMSS1-208ENST00000496116 ARHGAP23Q9P227 1491 aa14.08□□□□□ -0.16
CMSS1-208ENST00000496116 USP6P35125 1406 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 HDAC1Q13547 482 aaPredicted RBP14.07□□□□□ -0.16
CMSS1-208ENST00000496116 TBX22Q9Y458 520 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 DLG5Q8TDM6 1919 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 OVOS2A0A0J9YW53 1432 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 PTCH1Q13635 1447 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 OVOS2Q6IE36 1432 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 PTPRUQ92729 1446 aa14.07□□□□□ -0.16
CMSS1-208ENST00000496116 CHMP4BQ9H444 224 aaKnown RBP14.06□□□□□ -0.16
CMSS1-208ENST00000496116 DIP2AQ14689 1571 aa14.06□□□□□ -0.16
CMSS1-208ENST00000496116 THEMISQ8N1K5 641 aaPredicted RBP14.06□□□□□ -0.16
CMSS1-208ENST00000496116 TMEM57Q8N5G2 664 aa14.06□□□□□ -0.16
CMSS1-208ENST00000496116 AMOTL2Q9Y2J4 779 aa14.06□□□□□ -0.16
CMSS1-208ENST00000496116 ZNF853P0CG23 659 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 CFAP44Q96MT7 982 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 USP35Q9P2H5 1018 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 NALCNQ8IZF0 1738 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 VAMP4O75379 141 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 ARHGAP45Q92619 1136 aa14.05□□□□□ -0.16
CMSS1-208ENST00000496116 THUMPD2Q9BTF0 503 aaKnown RBP14.05□□□□□ -0.16
CMSS1-208ENST00000496116 NUTM2FA1L443 756 aa14.04□□□□□ -0.16
CMSS1-208ENST00000496116 UPF2Q9HAU5 1272 aaKnown RBP14.04□□□□□ -0.16
CMSS1-208ENST00000496116 MBIPQ9NS73 344 aa14.04□□□□□ -0.16
CMSS1-208ENST00000496116 ZBTB40Q9NUA8 1239 aa14.04□□□□□ -0.16
CMSS1-208ENST00000496116 TTC21AQ8NDW8 1320 aa14.04□□□□□ -0.16
CMSS1-208ENST00000496116 EIF4A2Q14240 407 aaKnown RBP14.03□□□□□ -0.16
CMSS1-208ENST00000496116 USP31Q70CQ4 1352 aa14.03□□□□□ -0.16
CMSS1-208ENST00000496116 MRPL50Q8N5N7 158 aaKnown RBP14.02□□□□□ -0.16
CMSS1-208ENST00000496116 HAP1P54257 671 aaPredicted RBP14.02□□□□□ -0.17
CMSS1-208ENST00000496116 TWISTNBQ3B726 338 aaPredicted RBP14.02□□□□□ -0.17
CMSS1-208ENST00000496116 SULT6B1Q6IMI4 303 aa14.02□□□□□ -0.17
CMSS1-208ENST00000496116 PLPPR3Q6T4P5 718 aa14.02□□□□□ -0.17
CMSS1-208ENST00000496116 SSH2Q76I76 1423 aa14.01□□□□□ -0.17
CMSS1-208ENST00000496116 SMC5Q8IY18 1101 aa14.01□□□□□ -0.17
CMSS1-208ENST00000496116 PIK3R4Q99570 1358 aa14□□□□□ -0.17
CMSS1-208ENST00000496116 DEKP35659 375 aaKnown RBP14□□□□□ -0.17
CMSS1-208ENST00000496116 TSPYL6Q8N831 410 aa14□□□□□ -0.17
CMSS1-208ENST00000496116 USP19O94966 1318 aa14□□□□□ -0.17
CMSS1-208ENST00000496116 RIMS1Q86UR5 1692 aaKnown RBP13.99□□□□□ -0.17
CMSS1-208ENST00000496116 FAM83GA6ND36 823 aa13.99□□□□□ -0.17
CMSS1-208ENST00000496116 NGDNQ8NEJ9 315 aaKnown RBP13.99□□□□□ -0.17
CMSS1-208ENST00000496116 PEAK1Q9H792 1746 aa13.99□□□□□ -0.17
CMSS1-208ENST00000496116 SEC24BO95487 1268 aa13.99□□□□□ -0.17
CMSS1-208ENST00000496116 SLC4A3P48751 1232 aa13.99□□□□□ -0.17
CMSS1-208ENST00000496116 RGPD1P0DJD0 1748 aa13.98□□□□□ -0.17
CMSS1-208ENST00000496116 XRN1Q8IZH2 1706 aaKnown RBP13.98□□□□□ -0.17
CMSS1-208ENST00000496116 ELL2O00472 640 aaPredicted RBP13.98□□□□□ -0.17
CMSS1-208ENST00000496116 BECN1Q14457 450 aa13.98□□□□□ -0.17
CMSS1-208ENST00000496116 HSP90AB2PQ58FF8 381 aa13.98□□□□□ -0.17
CMSS1-208ENST00000496116 AEBP1Q8IUX7 1158 aa13.98□□□□□ -0.17
CMSS1-208ENST00000496116 API5Q9BZZ5 524 aaKnown RBP13.98□□□□□ -0.17
CMSS1-208ENST00000496116 ARHGEF10O15013 1369 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 FLT4P35916 1363 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 FMN2Q9NZ56 1722 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 ANKARQ7Z5J8 1434 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 ZBTB7BO15156 539 aaPredicted RBP13.97□□□□□ -0.17
CMSS1-208ENST00000496116 DCTN1Q14203 1278 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 C8orf58Q8NAV2 365 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 ABCC4O15439 1325 aa13.97□□□□□ -0.17
CMSS1-208ENST00000496116 SBNO1A3KN83 1393 aa13.96□□□□□ -0.17
CMSS1-208ENST00000496116 RGPD8O14715 1765 aaPredicted RBP13.96□□□□□ -0.17
CMSS1-208ENST00000496116 SOX12O15370 315 aa13.96□□□□□ -0.18
CMSS1-208ENST00000496116 MAP3K19Q56UN5 1328 aa13.95□□□□□ -0.18
CMSS1-208ENST00000496116 GCC1Q96CN9 775 aa13.95□□□□□ -0.18
CMSS1-208ENST00000496116 CEP170BQ9Y4F5 1589 aaPredicted RBP13.94□□□□□ -0.18
CMSS1-208ENST00000496116 NUCB1Q02818 461 aa13.94□□□□□ -0.18
CMSS1-208ENST00000496116 TBC1D32Q96NH3 1257 aa13.94□□□□□ -0.18
CMSS1-208ENST00000496116 KIF24Q5T7B8 1368 aa13.94□□□□□ -0.18
CMSS1-208ENST00000496116 CHL1O00533 1208 aa13.94□□□□□ -0.18
CMSS1-208ENST00000496116 KIAA0232Q92628 1395 aa13.94□□□□□ -0.18
CMSS1-208ENST00000496116 AMPHP49418 695 aa13.93□□□□□ -0.18
CMSS1-208ENST00000496116 MCM10Q7L590 875 aa13.93□□□□□ -0.18
CMSS1-208ENST00000496116 CHD1LQ86WJ1 897 aa13.93□□□□□ -0.18
CMSS1-208ENST00000496116 PIK3C2AO00443 1686 aa13.93□□□□□ -0.18
CMSS1-208ENST00000496116 KCNA6P17658 529 aa13.92□□□□□ -0.18
CMSS1-208ENST00000496116 TRHP20396 242 aaPredicted RBP13.92□□□□□ -0.18
CMSS1-208ENST00000496116 RTF1Q92541 710 aaKnown RBP13.92□□□□□ -0.18
CMSS1-208ENST00000496116 KDRP35968 1356 aa13.91□□□□□ -0.18
CMSS1-208ENST00000496116 NLRP6P59044 892 aa13.91□□□□□ -0.18
CMSS1-208ENST00000496116 NFKBIBQ15653 356 aa13.91□□□□□ -0.18
CMSS1-208ENST00000496116 GAS2L2Q8NHY3 880 aa13.91□□□□□ -0.18
CMSS1-208ENST00000496116 IGSF1Q8N6C5 1336 aa13.9□□□□□ -0.18
CMSS1-208ENST00000496116 LNPKQ9C0E8 428 aa13.9□□□□□ -0.18
CMSS1-208ENST00000496116 PTPRCP08575 1304 aa13.9□□□□□ -0.18
CMSS1-208ENST00000496116 C1orf115Q9H7X2 142 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms