RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ZC3H6P61129 1189 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-209ENST00000494080 PDCL3Q9H2J4 239 aa19.73■□□□□ 0.75
CCDC88B-209ENST00000494080 ABCC2Q92887 1545 aa19.73■□□□□ 0.75
CCDC88B-209ENST00000494080 ADGRL2O95490 1459 aa19.72■□□□□ 0.75
CCDC88B-209ENST00000494080 ZNF592Q92610 1267 aa19.72■□□□□ 0.75
CCDC88B-209ENST00000494080 ZKSCAN1P17029 563 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-209ENST00000494080 CHD1LQ86WJ1 897 aa19.72■□□□□ 0.75
CCDC88B-209ENST00000494080 HSP90AB4PQ58FF6 505 aa19.71■□□□□ 0.75
CCDC88B-209ENST00000494080 LRPPRCP42704 1394 aaKnown RBP19.71■□□□□ 0.75
CCDC88B-209ENST00000494080 USHBP1Q8N6Y0 703 aa19.7■□□□□ 0.74
CCDC88B-209ENST00000494080 RRAGDQ9NQL2 400 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-209ENST00000494080 TRIM27P14373 513 aa19.7■□□□□ 0.74
CCDC88B-209ENST00000494080 CIZ1Q9ULV3 898 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-209ENST00000494080 IGHDP01880 384 aa19.7■□□□□ 0.74
CCDC88B-209ENST00000494080 CLASRPQ8N2M8 674 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 FAM83GA6ND36 823 aa19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 K7ELQ4 463 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 FOXO3O43524 673 aa19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 NEUROD6Q96NK8 337 aa19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 STRN4Q9NRL3 753 aa19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 ARHGEF12Q9NZN5 1544 aa19.69■□□□□ 0.74
CCDC88B-209ENST00000494080 ASXL1Q8IXJ9 1541 aa19.68■□□□□ 0.74
CCDC88B-209ENST00000494080 BCL11BQ9C0K0 894 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-209ENST00000494080 HTATSF1O43719 755 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-209ENST00000494080 CCT4P50991 539 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-209ENST00000494080 ERC2O15083 957 aa19.67■□□□□ 0.74
CCDC88B-209ENST00000494080 ABCC10Q5T3U5 1492 aa19.67■□□□□ 0.74
CCDC88B-209ENST00000494080 ATP6V1DQ9Y5K8 247 aa19.67■□□□□ 0.74
CCDC88B-209ENST00000494080 SRCIN1Q9C0H9 1055 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 TATP17735 454 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 IFT57Q9NWB7 429 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 ZRANB1Q9UGI0 708 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 HMGN5P82970 282 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 PRDM10Q9NQV6 1147 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 PPP6R1Q9UPN7 881 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 ABCC11Q96J66 1382 aa19.66■□□□□ 0.74
CCDC88B-209ENST00000494080 ACEP12821 1306 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 UHRF1BP1Q6BDS2 1440 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 MBD3O95983 291 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 NEK4P51957 841 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 TBC1D32Q96NH3 1257 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 NSD2O96028 1365 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 ANKRD36BQ8N2N9 1353 aa19.65■□□□□ 0.74
CCDC88B-209ENST00000494080 GNAT3A8MTJ3 354 aa19.64■□□□□ 0.74
CCDC88B-209ENST00000494080 TNPO1Q92973 898 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-209ENST00000494080 KDM6BO15054 1643 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 PLEKHH1Q9ULM0 1364 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 FAM184AQ8NB25 1140 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 EXOC6BQ9Y2D4 811 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 RNF123Q5XPI4 1314 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 F6X3S4 739 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 H3BQV1 296 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 RABEP1Q15276 862 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 IFFO2Q5TF58 517 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 IL1RAPL2Q9NP60 686 aa19.64■□□□□ 0.73
CCDC88B-209ENST00000494080 MYL6BP14649 208 aa19.63■□□□□ 0.73
CCDC88B-209ENST00000494080 PHF8Q9UPP1 1060 aa19.63■□□□□ 0.73
CCDC88B-209ENST00000494080 DDX54Q8TDD1 881 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-209ENST00000494080 HSP90AB2PQ58FF8 381 aa19.62■□□□□ 0.73
CCDC88B-209ENST00000494080 ALDH1L2Q3SY69 923 aa19.62■□□□□ 0.73
CCDC88B-209ENST00000494080 TSPY26PQ9H489 355 aa19.62■□□□□ 0.73
CCDC88B-209ENST00000494080 BTBD11A6QL63 1104 aa19.62■□□□□ 0.73
CCDC88B-209ENST00000494080 LRRCC1Q9C099 1032 aa19.62■□□□□ 0.73
CCDC88B-209ENST00000494080 VPS37CA5D8V6 355 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 SIL1Q9H173 461 aa19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 SPINK5Q9NQ38 1064 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 NCKAP5LQ9HCH0 1330 aa19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 SRGAP3O43295 1099 aa19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 TOM1L2Q6ZVM7 507 aa19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 MAP4K4O95819 1239 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-209ENST00000494080 APPP05067 770 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 GOLGA6L19H0YKK7 550 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 SF3A1Q15459 793 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 PRDM11Q9NQV5 511 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 TNNQ9UQP3 1299 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 RNF20Q5VTR2 975 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 RPAP2Q8IXW5 612 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 CNTROBQ8N137 903 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 FSD1Q9BTV5 496 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 KIF3AQ9Y496 699 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 TNRQ92752 1358 aa19.6■□□□□ 0.73
CCDC88B-209ENST00000494080 MBIPQ9NS73 344 aa19.59■□□□□ 0.73
CCDC88B-209ENST00000494080 COL17A1Q9UMD9 1497 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-209ENST00000494080 MBD5Q9P267 1494 aa19.59■□□□□ 0.73
CCDC88B-209ENST00000494080 SMARCA5O60264 1052 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-209ENST00000494080 SEC24BO95487 1268 aa19.58■□□□□ 0.73
CCDC88B-209ENST00000494080 POLKQ9UBT6 870 aa19.58■□□□□ 0.73
CCDC88B-209ENST00000494080 SMC3Q9UQE7 1217 aa19.58■□□□□ 0.73
CCDC88B-209ENST00000494080 FAM177BA6PVY3 158 aa19.58■□□□□ 0.72
CCDC88B-209ENST00000494080 BECN2A8MW95 431 aa19.58■□□□□ 0.72
CCDC88B-209ENST00000494080 SSFA2P28290 1259 aa19.58■□□□□ 0.72
CCDC88B-209ENST00000494080 RBM42Q9BTD8 480 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-209ENST00000494080 PCDHB15Q9Y5E8 787 aa19.58■□□□□ 0.72
CCDC88B-209ENST00000494080 CABP4P57796 275 aa19.57■□□□□ 0.72
CCDC88B-209ENST00000494080 ZHX1Q9UKY1 873 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-209ENST00000494080 AEBP1Q8IUX7 1158 aa19.57■□□□□ 0.72
CCDC88B-209ENST00000494080 KCNH5Q8NCM2 988 aa19.57■□□□□ 0.72
CCDC88B-209ENST00000494080 SPATA31E1Q6ZUB1 1445 aa19.56■□□□□ 0.72
CCDC88B-209ENST00000494080 POLR3AO14802 1390 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-209ENST00000494080 UHRF1BP1LA0JNW5 1464 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms