RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 C16orf71Q8IYS4 520 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-210ENST00000493582 PIBF1Q8WXW3 757 aa14.31□□□□□ -0.12
HDAC4-210ENST00000493582 BCL2L12Q9HB09 334 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 TRAK1Q9UPV9 953 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 SPHKAPQ2M3C7 1700 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 GTF2F1P35269 517 aaKnown RBP eCLIP14.3□□□□□ -0.126e-6■■■■□ 21.5
HDAC4-210ENST00000493582 PLEKHF1Q96S99 279 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 ST18O60284 1047 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 LETM1O95202 739 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-210ENST00000493582 PLEKHM2Q8IWE5 1019 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 USP25Q9UHP3 1055 aa14.3□□□□□ -0.12
HDAC4-210ENST00000493582 DUOX2Q9NRD8 1548 aa14.29□□□□□ -0.12
HDAC4-210ENST00000493582 PDE4CQ08493 712 aa14.29□□□□□ -0.12
HDAC4-210ENST00000493582 TPRNQ4KMQ1 711 aa14.29□□□□□ -0.12
HDAC4-210ENST00000493582 ABCC11Q96J66 1382 aa14.28□□□□□ -0.12
HDAC4-210ENST00000493582 MBD3O95983 291 aa14.28□□□□□ -0.12
HDAC4-210ENST00000493582 U2AF2P26368 475 aaKnown RBP eCLIP14.28□□□□□ -0.123e-6■■■□□ 15.4
HDAC4-210ENST00000493582 NCBP3Q53F19 620 aaKnown RBP14.28□□□□□ -0.12
HDAC4-210ENST00000493582 PDCL2Q8N4E4 241 aa14.28□□□□□ -0.12
HDAC4-210ENST00000493582 GDPD2Q9HCC8 539 aa14.28□□□□□ -0.12
HDAC4-210ENST00000493582 ARHGAP5Q13017 1502 aa14.28□□□□□ -0.12
HDAC4-210ENST00000493582 ELL2O00472 640 aaPredicted RBP14.27□□□□□ -0.12
HDAC4-210ENST00000493582 OTUD7AQ8TE49 926 aaPredicted RBP14.27□□□□□ -0.13
HDAC4-210ENST00000493582 GADD45BO75293 160 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-210ENST00000493582 ADCY5O95622 1261 aa14.26□□□□□ -0.13
HDAC4-210ENST00000493582 ALDH1L2Q3SY69 923 aa14.26□□□□□ -0.13
HDAC4-210ENST00000493582 ATAD2Q6PL18 1390 aa14.25□□□□□ -0.13
HDAC4-210ENST00000493582 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
HDAC4-210ENST00000493582 TTC22Q5TAA0 569 aa14.25□□□□□ -0.13
HDAC4-210ENST00000493582 FKBP5Q13451 457 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-210ENST00000493582 INTS3Q68E01 1043 aaKnown RBP14.25□□□□□ -0.13
HDAC4-210ENST00000493582 APBB1O00213 710 aa14.24□□□□□ -0.13
HDAC4-210ENST00000493582 PLCB2Q00722 1185 aa14.24□□□□□ -0.13
HDAC4-210ENST00000493582 NOL8Q76FK4 1167 aaKnown RBP14.24□□□□□ -0.13
HDAC4-210ENST00000493582 ZBTB22O15209 634 aa14.24□□□□□ -0.13
HDAC4-210ENST00000493582 SDSP20132 328 aa14.24□□□□□ -0.13
HDAC4-210ENST00000493582 TMEM51Q9NW97 253 aa14.24□□□□□ -0.13
HDAC4-210ENST00000493582 CLTCL1P53675 1640 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 IL16Q14005 1332 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 RIOK3O14730 519 aaKnown RBP14.23□□□□□ -0.13
HDAC4-210ENST00000493582 SMARCA5O60264 1052 aaPredicted RBP14.23□□□□□ -0.13
HDAC4-210ENST00000493582 NEK4P51957 841 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 TMX3Q96JJ7 454 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 CGNQ9P2M7 1197 aaKnown RBP14.23□□□□□ -0.13
HDAC4-210ENST00000493582 TMEM132EQ6IEE7 984 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 TSPYL6Q8N831 410 aa14.23□□□□□ -0.13
HDAC4-210ENST00000493582 ADGRB2O60241 1585 aa14.22□□□□□ -0.13
HDAC4-210ENST00000493582 BRD1O95696 1058 aa14.22□□□□□ -0.13
HDAC4-210ENST00000493582 SYAP1Q96A49 352 aaPredicted RBP14.22□□□□□ -0.13
HDAC4-210ENST00000493582 SPTLC3Q9NUV7 552 aa14.22□□□□□ -0.13
HDAC4-210ENST00000493582 TRPM2O94759 1503 aa14.22□□□□□ -0.13
HDAC4-210ENST00000493582 MRPL50Q8N5N7 158 aaKnown RBP14.22□□□□□ -0.13
HDAC4-210ENST00000493582 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.22□□□□□ -0.132e-6■■■■■ 38.2
HDAC4-210ENST00000493582 HCLS1P14317 486 aaPredicted RBP14.21□□□□□ -0.13
HDAC4-210ENST00000493582 ZNF771Q7L3S4 317 aaPredicted RBP14.21□□□□□ -0.13
HDAC4-210ENST00000493582 THUMPD2Q9BTF0 503 aaKnown RBP14.21□□□□□ -0.13
HDAC4-210ENST00000493582 GGNBP2Q9H3C7 697 aa14.21□□□□□ -0.13
HDAC4-210ENST00000493582 ADGRL1O94910 1474 aa14.21□□□□□ -0.13
HDAC4-210ENST00000493582 MED14O60244 1454 aa14.21□□□□□ -0.14
HDAC4-210ENST00000493582 VGLL3A8MV65 326 aa14.21□□□□□ -0.14
HDAC4-210ENST00000493582 VAMP4O75379 141 aa14.2□□□□□ -0.14
HDAC4-210ENST00000493582 CHMP4BQ9H444 224 aaKnown RBP14.2□□□□□ -0.14
HDAC4-210ENST00000493582 USP48Q86UV5 1035 aa14.2□□□□□ -0.14
HDAC4-210ENST00000493582 KIAA1210Q9ULL0 1709 aa14.2□□□□□ -0.14
HDAC4-210ENST00000493582 PYCARDQ9ULZ3 195 aa14.2□□□□□ -0.14
HDAC4-210ENST00000493582 SBNO2Q9Y2G9 1366 aa14.19□□□□□ -0.14
HDAC4-210ENST00000493582 CASC1Q6TDU7 716 aa14.19□□□□□ -0.14
HDAC4-210ENST00000493582 DCTPP1Q9H773 170 aa14.19□□□□□ -0.14
HDAC4-210ENST00000493582 CHGAP10645 457 aaKnown RBP14.19□□□□□ -0.14
HDAC4-210ENST00000493582 ANKRD7Q92527 254 aa14.19□□□□□ -0.14
HDAC4-210ENST00000493582 PHF14O94880 888 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 UVSSAQ2YD98 709 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 FAM184AQ8NB25 1140 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 NAP1L2Q9ULW6 460 aaPredicted RBP14.18□□□□□ -0.14
HDAC4-210ENST00000493582 REC8O95072 547 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 KIAA1524Q8TCG1 905 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 CFAP44Q96MT7 982 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 ABCA6Q8N139 1617 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 CHAF1AQ13111 956 aaPredicted RBP14.18□□□□□ -0.14
HDAC4-210ENST00000493582 BCL11BQ9C0K0 894 aaPredicted RBP14.18□□□□□ -0.14
HDAC4-210ENST00000493582 DIAPH3Q9NSV4 1193 aa14.18□□□□□ -0.14
HDAC4-210ENST00000493582 UGGT1Q9NYU2 1555 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 BRPF1P55201 1214 aaPredicted RBP14.17□□□□□ -0.14
HDAC4-210ENST00000493582 SPC24Q8NBT2 197 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 ARHGAP45Q92619 1136 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 AFAP1Q8N556 730 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 KCNF1Q9H3M0 494 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 CABP2Q9NPB3 220 aa14.17□□□□□ -0.14
HDAC4-210ENST00000493582 KDM4AO75164 1064 aa14.16□□□□□ -0.14
HDAC4-210ENST00000493582 ERC2O15083 957 aa14.16□□□□□ -0.14
HDAC4-210ENST00000493582 AP5Z1O43299 807 aa14.16□□□□□ -0.14
HDAC4-210ENST00000493582 ABCC4O15439 1325 aa14.15□□□□□ -0.14
HDAC4-210ENST00000493582 TRAPPC8Q9Y2L5 1435 aa14.15□□□□□ -0.14
HDAC4-210ENST00000493582 SAFB2Q14151 953 aaKnown RBP eCLIP14.15□□□□□ -0.14
HDAC4-210ENST00000493582 MAP3K4Q9Y6R4 1608 aa14.15□□□□□ -0.14
HDAC4-210ENST00000493582 CTIFO43310 598 aaKnown RBP14.14□□□□□ -0.15
HDAC4-210ENST00000493582 OGFRQ9NZT2 677 aa14.14□□□□□ -0.15
HDAC4-210ENST00000493582 PIK3R4Q99570 1358 aa14.14□□□□□ -0.15
HDAC4-210ENST00000493582 DIAPH1O60610 1272 aaKnown RBP14.14□□□□□ -0.15
HDAC4-210ENST00000493582 NAA30Q147X3 362 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms