RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 WFS1O76024 890 aa7.58□□□□□ -1.2
CPSF3-205ENST00000489629 CCDC116Q8IYX3 515 aa7.58□□□□□ -1.2
CPSF3-205ENST00000489629 PURBQ96QR8 312 aaKnown RBP7.58□□□□□ -1.2
CPSF3-205ENST00000489629 ZBTB33Q86T24 672 aa7.57□□□□□ -1.2
CPSF3-205ENST00000489629 MEIOBQ8N635 442 aa7.57□□□□□ -1.2
CPSF3-205ENST00000489629 ADAM32Q8TC27 787 aa7.57□□□□□ -1.2
CPSF3-205ENST00000489629 GJD4Q96KN9 370 aaPredicted RBP7.57□□□□□ -1.2
CPSF3-205ENST00000489629 KCTD15Q96SI1 283 aaPredicted RBP7.57□□□□□ -1.2
CPSF3-205ENST00000489629 CDV3Q9UKY7 258 aaKnown RBP7.57□□□□□ -1.2
CPSF3-205ENST00000489629 SCARF1Q14162 830 aa7.56□□□□□ -1.2
CPSF3-205ENST00000489629 SLC10A4Q96EP9 437 aa7.56□□□□□ -1.2
CPSF3-205ENST00000489629 EMILIN1Q9Y6C2 1016 aa7.56□□□□□ -1.2
CPSF3-205ENST00000489629 PPP1R26Q5T8A7 1209 aaPredicted RBP7.55□□□□□ -1.2
CPSF3-205ENST00000489629 PNMA1Q8ND90 353 aa7.55□□□□□ -1.2
CPSF3-205ENST00000489629 LINC00528Q8N1L1 170 aa7.54□□□□□ -1.2
CPSF3-205ENST00000489629 NXF1Q9UBU9 619 aaKnown RBP7.54□□□□□ -1.2
CPSF3-205ENST00000489629 WIPF1O43516 503 aa7.53□□□□□ -1.2
CPSF3-205ENST00000489629 INTS6LQ5JSJ4 861 aaKnown RBP7.53□□□□□ -1.2
CPSF3-205ENST00000489629 Q6ZVU0 165 aa7.53□□□□□ -1.2
CPSF3-205ENST00000489629 BANK1Q8NDB2 785 aa7.53□□□□□ -1.2
CPSF3-205ENST00000489629 SOBPA7XYQ1 873 aa7.52□□□□□ -1.21
CPSF3-205ENST00000489629 C6orf118Q5T5N4 469 aa7.52□□□□□ -1.21
CPSF3-205ENST00000489629 NPAS3Q8IXF0 933 aa7.52□□□□□ -1.21
CPSF3-205ENST00000489629 PGPEP1Q9NXJ5 209 aa7.52□□□□□ -1.21
CPSF3-205ENST00000489629 SOS2Q07890 1332 aaPredicted RBP7.52□□□□□ -1.21
CPSF3-205ENST00000489629 ESPNB1AK53 854 aa7.51□□□□□ -1.21
CPSF3-205ENST00000489629 SOCS7O14512 581 aa7.51□□□□□ -1.21
CPSF3-205ENST00000489629 BMP2P12643 396 aa7.51□□□□□ -1.21
CPSF3-205ENST00000489629 DHX9Q08211 1270 aaKnown RBP7.51□□□□□ -1.21
CPSF3-205ENST00000489629 CBLBQ13191 982 aa7.51□□□□□ -1.21
CPSF3-205ENST00000489629 TSEN34Q9BSV6 310 aaKnown RBP7.51□□□□□ -1.21
CPSF3-205ENST00000489629 ZBBXA8MT70 800 aa7.5□□□□□ -1.21
CPSF3-205ENST00000489629 H3BM21 787 aa7.5□□□□□ -1.21
CPSF3-205ENST00000489629 GPR37L1O60883 481 aa7.5□□□□□ -1.21
CPSF3-205ENST00000489629 NBPF20Q3BBV1 942 aa7.5□□□□□ -1.21
CPSF3-205ENST00000489629 DZIP3Q86Y13 1208 aaKnown RBP7.5□□□□□ -1.21
CPSF3-205ENST00000489629 MTMR14Q8NCE2 650 aa7.5□□□□□ -1.21
CPSF3-205ENST00000489629 UPP2O95045 317 aa7.49□□□□□ -1.21
CPSF3-205ENST00000489629 VEGFBP49765 207 aa7.49□□□□□ -1.21
CPSF3-205ENST00000489629 SLC16A10Q8TF71 515 aa7.49□□□□□ -1.21
CPSF3-205ENST00000489629 SNRKQ9NRH2 765 aa7.49□□□□□ -1.21
CPSF3-205ENST00000489629 TMPRSS4Q9NRS4 437 aa7.49□□□□□ -1.21
CPSF3-205ENST00000489629 FBXO45P0C2W1 286 aa7.48□□□□□ -1.21
CPSF3-205ENST00000489629 ERVH48-1M5A8F1 160 aa7.47□□□□□ -1.21
CPSF3-205ENST00000489629 SPINT1O43278 529 aa7.47□□□□□ -1.21
CPSF3-205ENST00000489629 PRKCSHP14314 528 aaPredicted RBP7.47□□□□□ -1.21
CPSF3-205ENST00000489629 DNMT3LQ9UJW3 386 aa7.47□□□□□ -1.21
CPSF3-205ENST00000489629 MAN1A2O60476 641 aa7.46□□□□□ -1.22
CPSF3-205ENST00000489629 LILRA1O75019 489 aa7.46□□□□□ -1.22
CPSF3-205ENST00000489629 ZNF784Q8NCA9 323 aaPredicted RBP7.46□□□□□ -1.22
CPSF3-205ENST00000489629 ERBB4Q15303 1308 aa7.46□□□□□ -1.22
CPSF3-205ENST00000489629 ADD1P35611 737 aaKnown RBP7.45□□□□□ -1.22
CPSF3-205ENST00000489629 GMPRP36959 345 aa7.45□□□□□ -1.22
CPSF3-205ENST00000489629 RAB15P59190 212 aa7.45□□□□□ -1.22
CPSF3-205ENST00000489629 SEPT12Q8IYM1 358 aa7.45□□□□□ -1.22
CPSF3-205ENST00000489629 IRF7Q92985 503 aa7.45□□□□□ -1.22
CPSF3-205ENST00000489629 AGBL1Q96MI9 1066 aa7.45□□□□□ -1.22
CPSF3-205ENST00000489629 TTLL8A6PVC2 850 aa7.44□□□□□ -1.22
CPSF3-205ENST00000489629 GIGYF1O75420 1035 aaPredicted RBP7.44□□□□□ -1.22
CPSF3-205ENST00000489629 NR1H3Q13133 447 aa7.44□□□□□ -1.22
CPSF3-205ENST00000489629 KDF1Q8NAX2 398 aaPredicted RBP7.44□□□□□ -1.22
CPSF3-205ENST00000489629 NDUFB9Q9Y6M9 179 aa7.44□□□□□ -1.22
CPSF3-205ENST00000489629 PPFIA3O75145 1194 aa7.43□□□□□ -1.22
CPSF3-205ENST00000489629 VSIG8P0DPA2 414 aa7.43□□□□□ -1.22
CPSF3-205ENST00000489629 PCDHB9Q9Y5E1 797 aa7.43□□□□□ -1.22
CPSF3-205ENST00000489629 ADH1AP07327 375 aa7.42□□□□□ -1.22
CPSF3-205ENST00000489629 LORP23490 312 aaPredicted RBP7.42□□□□□ -1.22
CPSF3-205ENST00000489629 CTSOP43234 321 aaPredicted RBP7.42□□□□□ -1.22
CPSF3-205ENST00000489629 INSM1Q01101 510 aaPredicted RBP7.42□□□□□ -1.22
CPSF3-205ENST00000489629 RELBQ01201 579 aa7.42□□□□□ -1.22
CPSF3-205ENST00000489629 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.42□□□□□ -1.22
CPSF3-205ENST00000489629 FIGNL2A6NMB9 653 aa7.41□□□□□ -1.22
CPSF3-205ENST00000489629 MCCD1P59942 119 aaPredicted RBP7.41□□□□□ -1.22
CPSF3-205ENST00000489629 ZNF395Q9H8N7 513 aaPredicted RBP7.41□□□□□ -1.22
CPSF3-205ENST00000489629 APBB1O00213 710 aa7.4□□□□□ -1.22
CPSF3-205ENST00000489629 PTGIRP43119 386 aa7.4□□□□□ -1.22
CPSF3-205ENST00000489629 CCDC125Q86Z20 511 aa7.4□□□□□ -1.22
CPSF3-205ENST00000489629 INSM2Q96T92 566 aaPredicted RBP7.4□□□□□ -1.22
CPSF3-205ENST00000489629 PTSQ03393 145 aa7.39□□□□□ -1.23
CPSF3-205ENST00000489629 RNF217Q8TC41 542 aa7.39□□□□□ -1.23
CPSF3-205ENST00000489629 CYLDQ9NQC7 956 aa7.39□□□□□ -1.23
CPSF3-205ENST00000489629 SLC35F4A4IF30 521 aa7.38□□□□□ -1.23
CPSF3-205ENST00000489629 ERVK-9P63128 1117 aa7.38□□□□□ -1.23
CPSF3-205ENST00000489629 FOXD4L5Q5VV16 416 aaPredicted RBP7.38□□□□□ -1.23
CPSF3-205ENST00000489629 STK17AQ9UEE5 414 aa7.38□□□□□ -1.23
CPSF3-205ENST00000489629 TBC1D2BQ9UPU7 963 aa7.38□□□□□ -1.23
CPSF3-205ENST00000489629 IRF5Q13568 498 aa7.37□□□□□ -1.23
CPSF3-205ENST00000489629 RNF20Q5VTR2 975 aa7.37□□□□□ -1.23
CPSF3-205ENST00000489629 ZNF592Q92610 1267 aa7.37□□□□□ -1.23
CPSF3-205ENST00000489629 POLMQ9NP87 494 aaPredicted RBP7.37□□□□□ -1.23
CPSF3-205ENST00000489629 ZNF330Q9Y3S2 320 aaPredicted RBP7.37□□□□□ -1.23
CPSF3-205ENST00000489629 CCDC155Q8N6L0 562 aa7.36□□□□□ -1.23
CPSF3-205ENST00000489629 TRIM52Q96A61 297 aa7.36□□□□□ -1.23
CPSF3-205ENST00000489629 SCTRP47872 440 aa7.35□□□□□ -1.23
CPSF3-205ENST00000489629 CC2D2BQ6DHV5 1058 aa7.35□□□□□ -1.23
CPSF3-205ENST00000489629 SENP3-EIF4A1A0A087X0R7 540 aa7.34□□□□□ -1.23
CPSF3-205ENST00000489629 ATP5J2-PTCD1G3V325 749 aa7.34□□□□□ -1.23
CPSF3-205ENST00000489629 RNF144AP50876 292 aaPredicted RBP7.34□□□□□ -1.23
CPSF3-205ENST00000489629 GPR161Q8N6U8 529 aaKnown RBP7.34□□□□□ -1.23
CPSF3-205ENST00000489629 NANOS1Q8WY41 292 aaKnown RBP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms