RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 CAMTA1Q9Y6Y1 1673 aa12.66□□□□□ -0.38
HDAC6-232ENST00000489053 COL5A2P05997 1499 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-232ENST00000489053 WDR17Q8IZU2 1322 aa12.65□□□□□ -0.38
HDAC6-232ENST00000489053 FAM182BQ5T319 152 aa12.65□□□□□ -0.38
HDAC6-232ENST00000489053 CDCA7Q9BWT1 371 aaPredicted RBP12.65□□□□□ -0.38
HDAC6-232ENST00000489053 USP31Q70CQ4 1352 aa12.65□□□□□ -0.38
HDAC6-232ENST00000489053 ANKRD36BQ8N2N9 1353 aa12.65□□□□□ -0.38
HDAC6-232ENST00000489053 AKAP12Q02952 1782 aa12.64□□□□□ -0.39
HDAC6-232ENST00000489053 C11orf95C9JLR9 678 aaPredicted RBP12.64□□□□□ -0.39
HDAC6-232ENST00000489053 DDB1Q16531 1140 aa12.64□□□□□ -0.39
HDAC6-232ENST00000489053 NLRP2Q9NX02 1062 aa12.64□□□□□ -0.39
HDAC6-232ENST00000489053 CD163L1Q9NR16 1453 aa12.64□□□□□ -0.39
HDAC6-232ENST00000489053 AMPHP49418 695 aa12.63□□□□□ -0.39
HDAC6-232ENST00000489053 MON2Q7Z3U7 1717 aa12.62□□□□□ -0.39
HDAC6-232ENST00000489053 DEFB132Q7Z7B7 95 aa12.62□□□□□ -0.39
HDAC6-232ENST00000489053 AXIN2Q9Y2T1 843 aa12.62□□□□□ -0.39
HDAC6-232ENST00000489053 CCDC7Q96M83 1385 aa12.61□□□□□ -0.39
HDAC6-232ENST00000489053 TRIM37O94972 964 aa12.61□□□□□ -0.39
HDAC6-232ENST00000489053 ANKRD24Q8TF21 1146 aa12.61□□□□□ -0.39
HDAC6-232ENST00000489053 LTV1Q96GA3 475 aaPredicted RBP12.61□□□□□ -0.39
HDAC6-232ENST00000489053 CARD10Q9BWT7 1032 aa12.61□□□□□ -0.39
HDAC6-232ENST00000489053 LMO7Q8WWI1 1683 aa12.61□□□□□ -0.39
HDAC6-232ENST00000489053 HSPA5P11021 654 aaKnown RBP12.6□□□□□ -0.39
HDAC6-232ENST00000489053 GGNBP2Q9H3C7 697 aa12.6□□□□□ -0.39
HDAC6-232ENST00000489053 NFAT5O94916 1531 aa12.6□□□□□ -0.39
HDAC6-232ENST00000489053 THSD7AQ9UPZ6 1657 aa12.6□□□□□ -0.39
HDAC6-232ENST00000489053 ABCC6O95255 1503 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 EXOC5O00471 708 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 APBA3O96018 575 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 BRWD3Q6RI45 1802 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 OVOS2A0A0J9YW53 1432 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 OVOS2Q6IE36 1432 aa12.59□□□□□ -0.39
HDAC6-232ENST00000489053 OVOS2A0A0G2JMS6 1433 aa12.58□□□□□ -0.4
HDAC6-232ENST00000489053 EN1Q05925 392 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-232ENST00000489053 IP6K1Q92551 441 aa12.58□□□□□ -0.4
HDAC6-232ENST00000489053 ERBB3P21860 1342 aa12.58□□□□□ -0.4
HDAC6-232ENST00000489053 CGNL1Q0VF96 1302 aa12.58□□□□□ -0.4
HDAC6-232ENST00000489053 SMG6Q86US8 1419 aaKnown RBP12.57□□□□□ -0.4
HDAC6-232ENST00000489053 NSD3Q9BZ95 1437 aa12.57□□□□□ -0.4
HDAC6-232ENST00000489053 SRCAPQ6ZRS2 3230 aa12.56□□□□□ -0.4
HDAC6-232ENST00000489053 FYB1O15117 783 aa12.56□□□□□ -0.4
HDAC6-232ENST00000489053 IL2RBP14784 551 aa12.56□□□□□ -0.4
HDAC6-232ENST00000489053 MAP3K19Q56UN5 1328 aa12.56□□□□□ -0.4
HDAC6-232ENST00000489053 PPM1GO15355 546 aaPredicted RBP12.55□□□□□ -0.4
HDAC6-232ENST00000489053 RRS1Q15050 365 aaKnown RBP12.55□□□□□ -0.4
HDAC6-232ENST00000489053 HOXC9P31274 260 aa12.54□□□□□ -0.4
HDAC6-232ENST00000489053 NBPF14Q5TI25 921 aa12.54□□□□□ -0.4
HDAC6-232ENST00000489053 RTL1A6NKG5 1358 aa12.54□□□□□ -0.4
HDAC6-232ENST00000489053 PARD3Q8TEW0 1356 aa12.54□□□□□ -0.4
HDAC6-232ENST00000489053 USP54Q70EL1 1684 aa12.53□□□□□ -0.4
HDAC6-232ENST00000489053 RGPD1P0DJD0 1748 aa12.53□□□□□ -0.4
HDAC6-232ENST00000489053 COL18A1P39060 1754 aa12.52□□□□□ -0.41
HDAC6-232ENST00000489053 EZH2Q15910 746 aaKnown RBP12.52□□□□□ -0.41
HDAC6-232ENST00000489053 PARP4Q9UKK3 1724 aaKnown RBP12.51□□□□□ -0.41
HDAC6-232ENST00000489053 PSDA5PKW4 1024 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-232ENST00000489053 FBLN1P23142 703 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 MARCH10Q8NA82 808 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-232ENST00000489053 RAPGEF4Q8WZA2 1011 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 CARD14Q9BXL6 1004 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 BCL11BQ9C0K0 894 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-232ENST00000489053 KNSTRNQ9Y448 316 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 DISP2A7MBM2 1401 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 TNS2Q63HR2 1409 aa12.51□□□□□ -0.41
HDAC6-232ENST00000489053 TNNT2P45379 298 aaPredicted RBP12.5□□□□□ -0.41
HDAC6-232ENST00000489053 DDX54Q8TDD1 881 aaKnown RBP12.5□□□□□ -0.41
HDAC6-232ENST00000489053 PANK3Q9H999 370 aa12.5□□□□□ -0.41
HDAC6-232ENST00000489053 FLT4P35916 1363 aa12.5□□□□□ -0.41
HDAC6-232ENST00000489053 LTN1O94822 1766 aa12.5□□□□□ -0.41
HDAC6-232ENST00000489053 LRRC37A3O60309 1634 aa12.49□□□□□ -0.41
HDAC6-232ENST00000489053 KIF24Q5T7B8 1368 aa12.49□□□□□ -0.41
HDAC6-232ENST00000489053 R3HDM1Q15032 1099 aaKnown RBP12.49□□□□□ -0.41
HDAC6-232ENST00000489053 CAMKK2Q96RR4 588 aa12.49□□□□□ -0.41
HDAC6-232ENST00000489053 TATP17735 454 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-232ENST00000489053 SYTL4Q96C24 671 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-232ENST00000489053 ACSBG1Q96GR2 724 aa12.48□□□□□ -0.41
HDAC6-232ENST00000489053 INSRP06213 1382 aa12.47□□□□□ -0.41
HDAC6-232ENST00000489053 HSP90AB2PQ58FF8 381 aa12.47□□□□□ -0.41
HDAC6-232ENST00000489053 MORC1Q86VD1 984 aa12.47□□□□□ -0.41
HDAC6-232ENST00000489053 USHBP1Q8N6Y0 703 aa12.47□□□□□ -0.41
HDAC6-232ENST00000489053 ZCRB1Q8TBF4 217 aaKnown RBP12.47□□□□□ -0.41
HDAC6-232ENST00000489053 EMILIN1Q9Y6C2 1016 aa12.47□□□□□ -0.41
HDAC6-232ENST00000489053 RGPD5Q99666 1765 aa12.46□□□□□ -0.41
HDAC6-232ENST00000489053 KIF20BQ96Q89 1820 aa12.46□□□□□ -0.42
HDAC6-232ENST00000489053 NSD2O96028 1365 aa12.45□□□□□ -0.42
HDAC6-232ENST00000489053 NBPF6Q5VWK0 638 aa12.45□□□□□ -0.42
HDAC6-232ENST00000489053 NBPF4Q96M43 638 aa12.45□□□□□ -0.42
HDAC6-232ENST00000489053 BCL9O00512 1426 aa12.45□□□□□ -0.42
HDAC6-232ENST00000489053 MYOM1P52179 1685 aa12.45□□□□□ -0.42
HDAC6-232ENST00000489053 PLSCR1O15162 318 aa12.44□□□□□ -0.42
HDAC6-232ENST00000489053 TNS1Q9HBL0 1735 aaKnown RBP12.44□□□□□ -0.42
HDAC6-232ENST00000489053 FAM208AQ9UK61 1670 aaKnown RBP12.44□□□□□ -0.42
HDAC6-232ENST00000489053 KIF7Q2M1P5 1343 aa12.43□□□□□ -0.42
HDAC6-232ENST00000489053 STK32BQ9NY57 414 aa12.43□□□□□ -0.42
HDAC6-232ENST00000489053 WNK3Q9BYP7 1800 aa12.43□□□□□ -0.42
HDAC6-232ENST00000489053 WASHC2AQ641Q2 1341 aa12.42□□□□□ -0.42
HDAC6-232ENST00000489053 PCDH11XQ9BZA7 1347 aa12.42□□□□□ -0.42
HDAC6-232ENST00000489053 PCDH11YQ9BZA8 1340 aa12.42□□□□□ -0.42
HDAC6-232ENST00000489053 KCNQ2O43526 872 aa12.42□□□□□ -0.42
HDAC6-232ENST00000489053 TXNRD1Q16881 649 aa12.41□□□□□ -0.42
HDAC6-232ENST00000489053 PTF1AQ7RTS3 328 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms