RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 SPATA31A7Q8IWB4 1347 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 NSD2O96028 1365 aa11.27□□□□□ -0.61
SF3A1-208ENST00000485618 NSD3Q9BZ95 1437 aa11.26□□□□□ -0.61
SF3A1-208ENST00000485618 ZNF316A6NFI3 1004 aaPredicted RBP11.26□□□□□ -0.61
SF3A1-208ENST00000485618 ZC3H6P61129 1189 aaKnown RBP11.26□□□□□ -0.61
SF3A1-208ENST00000485618 MON2Q7Z3U7 1717 aa11.26□□□□□ -0.61
SF3A1-208ENST00000485618 EN1Q05925 392 aaPredicted RBP11.25□□□□□ -0.61
SF3A1-208ENST00000485618 MORC1Q86VD1 984 aa11.25□□□□□ -0.61
SF3A1-208ENST00000485618 CPDO75976 1380 aa11.25□□□□□ -0.61
SF3A1-208ENST00000485618 KIAA0232Q92628 1395 aa11.25□□□□□ -0.61
SF3A1-208ENST00000485618 DISP2A7MBM2 1401 aa11.25□□□□□ -0.61
SF3A1-208ENST00000485618 ZBTB7CA1YPR0 619 aa11.24□□□□□ -0.61
SF3A1-208ENST00000485618 SOX12O15370 315 aa11.24□□□□□ -0.61
SF3A1-208ENST00000485618 GGNBP2Q9H3C7 697 aa11.24□□□□□ -0.61
SF3A1-208ENST00000485618 STRN4Q9NRL3 753 aa11.24□□□□□ -0.61
SF3A1-208ENST00000485618 AMPHP49418 695 aa11.23□□□□□ -0.61
SF3A1-208ENST00000485618 R3HDM1Q15032 1099 aaKnown RBP11.23□□□□□ -0.61
SF3A1-208ENST00000485618 CHRNA2Q15822 529 aa11.23□□□□□ -0.61
SF3A1-208ENST00000485618 SPATA31A1Q5TZJ5 1347 aa11.23□□□□□ -0.61
SF3A1-208ENST00000485618 NRKQ7Z2Y5 1582 aa11.23□□□□□ -0.61
SF3A1-208ENST00000485618 AATKQ6ZMQ8 1374 aa11.22□□□□□ -0.61
SF3A1-208ENST00000485618 ARHGEF25Q86VW2 580 aa11.22□□□□□ -0.61
SF3A1-208ENST00000485618 NPC1L1Q9UHC9 1359 aa11.21□□□□□ -0.61
SF3A1-208ENST00000485618 PER1O15534 1290 aaPredicted RBP11.21□□□□□ -0.61
SF3A1-208ENST00000485618 DDX10Q13206 875 aaKnown RBP11.21□□□□□ -0.61
SF3A1-208ENST00000485618 TRIM37O94972 964 aa11.2□□□□□ -0.62
SF3A1-208ENST00000485618 CSB-PGBD3P0DP91 1061 aa11.2□□□□□ -0.62
SF3A1-208ENST00000485618 EZH2Q15910 746 aaKnown RBP11.2□□□□□ -0.62
SF3A1-208ENST00000485618 AMER1Q5JTC6 1135 aaPredicted RBP11.2□□□□□ -0.62
SF3A1-208ENST00000485618 USP35Q9P2H5 1018 aa11.2□□□□□ -0.62
SF3A1-208ENST00000485618 PIK3C2AO00443 1686 aa11.2□□□□□ -0.62
SF3A1-208ENST00000485618 MYOM1P52179 1685 aa11.2□□□□□ -0.62
SF3A1-208ENST00000485618 OVOS2A0A0J9YW53 1432 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 OVOS2Q6IE36 1432 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 KIF24Q5T7B8 1368 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 CC2D1BQ5T0F9 858 aaKnown RBP11.19□□□□□ -0.62
SF3A1-208ENST00000485618 FAM196AQ6ZSG2 479 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 IP6K1Q92551 441 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 SLIT3O75094 1523 aa11.19□□□□□ -0.62
SF3A1-208ENST00000485618 PARD3Q8TEW0 1356 aa11.18□□□□□ -0.62
SF3A1-208ENST00000485618 LMO7Q8WWI1 1683 aa11.18□□□□□ -0.62
SF3A1-208ENST00000485618 RREB1Q92766 1687 aa11.18□□□□□ -0.62
SF3A1-208ENST00000485618 PPM1GO15355 546 aaPredicted RBP11.18□□□□□ -0.62
SF3A1-208ENST00000485618 TNNT2P45379 298 aaPredicted RBP11.18□□□□□ -0.62
SF3A1-208ENST00000485618 IFFO2Q5TF58 517 aa11.18□□□□□ -0.62
SF3A1-208ENST00000485618 CAMTA1Q9Y6Y1 1673 aa11.17□□□□□ -0.62
SF3A1-208ENST00000485618 APBA3O96018 575 aa11.17□□□□□ -0.62
SF3A1-208ENST00000485618 PDE3BQ13370 1112 aa11.17□□□□□ -0.62
SF3A1-208ENST00000485618 CAMKK2Q96RR4 588 aa11.17□□□□□ -0.62
SF3A1-208ENST00000485618 THRAP3Q9Y2W1 955 aaKnown RBP11.17□□□□□ -0.62
SF3A1-208ENST00000485618 NUP188Q5SRE5 1749 aa11.17□□□□□ -0.62
SF3A1-208ENST00000485618 RTL1A6NKG5 1358 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 MAP3K19Q56UN5 1328 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 RALBP1Q15311 655 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 LARP1Q6PKG0 1096 aaKnown RBP11.16□□□□□ -0.62
SF3A1-208ENST00000485618 BARGINQ6ZT62 677 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 TOM1L2Q6ZVM7 507 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 CFAP53Q96M91 514 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 SMG6Q86US8 1419 aaKnown RBP11.16□□□□□ -0.62
SF3A1-208ENST00000485618 KIF20BQ96Q89 1820 aa11.16□□□□□ -0.62
SF3A1-208ENST00000485618 ABCC6O95255 1503 aa11.15□□□□□ -0.62
SF3A1-208ENST00000485618 USP54Q70EL1 1684 aa11.15□□□□□ -0.62
SF3A1-208ENST00000485618 COL5A2P05997 1499 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-208ENST00000485618 HOXC9P31274 260 aa11.15□□□□□ -0.62
SF3A1-208ENST00000485618 CNGB1Q14028 1251 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-208ENST00000485618 RRS1Q15050 365 aaKnown RBP11.15□□□□□ -0.62
SF3A1-208ENST00000485618 TCP11L2Q8N4U5 519 aa11.15□□□□□ -0.62
SF3A1-208ENST00000485618 CDCA7Q9BWT1 371 aaPredicted RBP11.15□□□□□ -0.62
SF3A1-208ENST00000485618 FLT4P35916 1363 aa11.15□□□□□ -0.63
SF3A1-208ENST00000485618 WDR17Q8IZU2 1322 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 ANKRD24Q8TF21 1146 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 CARD10Q9BWT7 1032 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 NLRP2Q9NX02 1062 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 POLKQ9UBT6 870 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 PARP4Q9UKK3 1724 aaKnown RBP11.14□□□□□ -0.63
SF3A1-208ENST00000485618 NFAT5O94916 1531 aa11.14□□□□□ -0.63
SF3A1-208ENST00000485618 LTV1Q96GA3 475 aaPredicted RBP11.13□□□□□ -0.63
SF3A1-208ENST00000485618 AXIN2Q9Y2T1 843 aa11.13□□□□□ -0.63
SF3A1-208ENST00000485618 LRRC37A3O60309 1634 aa11.13□□□□□ -0.63
SF3A1-208ENST00000485618 CRB1P82279 1406 aa11.12□□□□□ -0.63
SF3A1-208ENST00000485618 MTHFSP49914 203 aa11.12□□□□□ -0.63
SF3A1-208ENST00000485618 NBPF14Q5TI25 921 aa11.12□□□□□ -0.63
SF3A1-208ENST00000485618 INSRP06213 1382 aa11.12□□□□□ -0.63
SF3A1-208ENST00000485618 ERBB3P21860 1342 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 OVOS2A0A0G2JMS6 1433 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 ANP32CO43423 234 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 YY1P25490 414 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 HSP90AB2PQ58FF8 381 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 NUDCQ9Y266 331 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 EMILIN1Q9Y6C2 1016 aa11.11□□□□□ -0.63
SF3A1-208ENST00000485618 PEAK1Q9H792 1746 aa11.1□□□□□ -0.63
SF3A1-208ENST00000485618 FBLN1P23142 703 aa11.1□□□□□ -0.63
SF3A1-208ENST00000485618 PPP1R1BQ9UD71 204 aaPredicted RBP11.1□□□□□ -0.63
SF3A1-208ENST00000485618 ANKRD26Q9UPS8 1709 aa11.09□□□□□ -0.63
SF3A1-208ENST00000485618 WNK3Q9BYP7 1800 aa11.09□□□□□ -0.63
SF3A1-208ENST00000485618 RGPD3A6NKT7 1758 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-208ENST00000485618 RGPD4Q7Z3J3 1758 aa11.09□□□□□ -0.63
SF3A1-208ENST00000485618 DIAPH1O60610 1272 aaKnown RBP11.09□□□□□ -0.63
SF3A1-208ENST00000485618 RAPGEF4Q8WZA2 1011 aa11.09□□□□□ -0.63
SF3A1-208ENST00000485618 MAP2P11137 1827 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms