RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 SIPA1L3O60292 1781 aaPredicted RBP10.35□□□□□ -0.75
USP4-211ENST00000485450 NOP58Q9Y2X3 529 aaKnown RBP10.34□□□□□ -0.75
USP4-211ENST00000485450 RREB1Q92766 1687 aa10.34□□□□□ -0.75
USP4-211ENST00000485450 HSPA5P11021 654 aaKnown RBP10.34□□□□□ -0.75
USP4-211ENST00000485450 CDCA8Q53HL2 280 aa10.34□□□□□ -0.75
USP4-211ENST00000485450 ACEP12821 1306 aa10.34□□□□□ -0.75
USP4-211ENST00000485450 BLMP54132 1417 aaPredicted RBP10.34□□□□□ -0.75
USP4-211ENST00000485450 EIF4G2P78344 907 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP4-211ENST00000485450 LRRC59Q96AG4 307 aaKnown RBP10.33□□□□□ -0.76
USP4-211ENST00000485450 PER1O15534 1290 aaPredicted RBP10.33□□□□□ -0.76
USP4-211ENST00000485450 TMF1P82094 1093 aa10.33□□□□□ -0.76
USP4-211ENST00000485450 POGKQ9P215 609 aa10.33□□□□□ -0.76
USP4-211ENST00000485450 STK26Q9P289 416 aa10.33□□□□□ -0.76
USP4-211ENST00000485450 COL5A2P05997 1499 aaPredicted RBP10.33□□□□□ -0.76
USP4-211ENST00000485450 FNBP4Q8N3X1 1017 aaPredicted RBP10.33□□□□□ -0.76
USP4-211ENST00000485450 NHSQ6T4R5 1651 aa10.32□□□□□ -0.76
USP4-211ENST00000485450 MINK1Q8N4C8 1332 aaPredicted RBP10.32□□□□□ -0.76
USP4-211ENST00000485450 KIF7Q2M1P5 1343 aa10.32□□□□□ -0.76
USP4-211ENST00000485450 PSME1Q06323 249 aa10.31□□□□□ -0.76
USP4-211ENST00000485450 TTC21BQ7Z4L5 1316 aa10.31□□□□□ -0.76
USP4-211ENST00000485450 BRPF3Q9ULD4 1205 aa10.3□□□□□ -0.76
USP4-211ENST00000485450 KTN1Q86UP2 1357 aaKnown RBP10.3□□□□□ -0.76
USP4-211ENST00000485450 CCER2I3L3R5 266 aa10.29□□□□□ -0.76
USP4-211ENST00000485450 CARD14Q9BXL6 1004 aa10.29□□□□□ -0.76
USP4-211ENST00000485450 TOGARAM1Q9Y4F4 1720 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
USP4-211ENST00000485450 KRT28Q7Z3Y7 464 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 RBM33Q96EV2 1170 aaKnown RBP10.28□□□□□ -0.76
USP4-211ENST00000485450 CABP2Q9NPB3 220 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 LY75O60449 1722 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 TPRNQ4KMQ1 711 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 RSPH6AQ9H0K4 717 aa10.28□□□□□ -0.76
USP4-211ENST00000485450 PARD3Q8TEW0 1356 aa10.27□□□□□ -0.76
USP4-211ENST00000485450 UBR2Q8IWV8 1755 aa10.27□□□□□ -0.77
USP4-211ENST00000485450 RGS17Q9UGC6 210 aaPredicted RBP10.27□□□□□ -0.77
USP4-211ENST00000485450 NSD3Q9BZ95 1437 aa10.27□□□□□ -0.77
USP4-211ENST00000485450 RTL5Q5HYW3 569 aaPredicted RBP10.27□□□□□ -0.77
USP4-211ENST00000485450 CABP1Q9NZU7 370 aa10.27□□□□□ -0.77
USP4-211ENST00000485450 ESCO1Q5FWF5 840 aa10.26□□□□□ -0.77
USP4-211ENST00000485450 SCN11AQ9UI33 1791 aa10.26□□□□□ -0.77
USP4-211ENST00000485450 MRC1P22897 1456 aa10.25□□□□□ -0.77
USP4-211ENST00000485450 TERF2IPQ9NYB0 399 aa10.24□□□□□ -0.77
USP4-211ENST00000485450 HIRIP3Q9BW71 556 aaPredicted RBP10.23□□□□□ -0.77
USP4-211ENST00000485450 ARHGEF25Q86VW2 580 aa10.23□□□□□ -0.77
USP4-211ENST00000485450 PPP4R2Q9NY27 417 aa10.23□□□□□ -0.77
USP4-211ENST00000485450 CGNL1Q0VF96 1302 aa10.22□□□□□ -0.77
USP4-211ENST00000485450 FYB1O15117 783 aa10.22□□□□□ -0.77
USP4-211ENST00000485450 ITGB4P16144 1822 aa10.22□□□□□ -0.77
USP4-211ENST00000485450 NUP188Q5SRE5 1749 aa10.22□□□□□ -0.77
USP4-211ENST00000485450 RGS12O14924 1447 aa10.21□□□□□ -0.77
USP4-211ENST00000485450 CRB1P82279 1406 aa10.21□□□□□ -0.77
USP4-211ENST00000485450 KDRP35968 1356 aa10.21□□□□□ -0.77
USP4-211ENST00000485450 KCNH5Q8NCM2 988 aa10.21□□□□□ -0.77
USP4-211ENST00000485450 SLC12A5Q9H2X9 1139 aa10.21□□□□□ -0.77
USP4-211ENST00000485450 COL5A3P25940 1745 aaPredicted RBP10.21□□□□□ -0.78
USP4-211ENST00000485450 FOXO3O43524 673 aa10.2□□□□□ -0.78
USP4-211ENST00000485450 PRDM4Q9UKN5 801 aa10.2□□□□□ -0.78
USP4-211ENST00000485450 SRPK2P78362 688 aaKnown RBP10.2□□□□□ -0.78
USP4-211ENST00000485450 DOT1LQ8TEK3 1739 aa10.2□□□□□ -0.78
USP4-211ENST00000485450 VPS72Q15906 364 aa10.2□□□□□ -0.78
USP4-211ENST00000485450 HDGFL2Q7Z4V5 671 aaPredicted RBP10.2□□□□□ -0.78
USP4-211ENST00000485450 DDX17Q92841 729 aaKnown RBP10.2□□□□□ -0.78
USP4-211ENST00000485450 OVOS2A0A0G2JMS6 1433 aa10.19□□□□□ -0.78
USP4-211ENST00000485450 DDX10Q13206 875 aaKnown RBP10.19□□□□□ -0.78
USP4-211ENST00000485450 IPO9Q96P70 1041 aaKnown RBP10.19□□□□□ -0.78
USP4-211ENST00000485450 DLG5Q8TDM6 1919 aa10.19□□□□□ -0.78
USP4-211ENST00000485450 TNS2Q63HR2 1409 aa10.19□□□□□ -0.78
USP4-211ENST00000485450 KDM3BQ7LBC6 1761 aa10.19□□□□□ -0.78
USP4-211ENST00000485450 BARGINQ6ZT62 677 aa10.19□□□□□ -0.78
USP4-211ENST00000485450 GLIPR1L2Q4G1C9 344 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 NLRP13Q86W25 1043 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 THRAP3Q9Y2W1 955 aaKnown RBP10.18□□□□□ -0.78
USP4-211ENST00000485450 TAF1LQ8IZX4 1826 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 C5P01031 1676 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 SPATA31A5Q5VU36 1347 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 SPATA31A7Q8IWB4 1347 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 KIAA0232Q92628 1395 aa10.18□□□□□ -0.78
USP4-211ENST00000485450 C14orf37Q86TY3 774 aa10.17□□□□□ -0.78
USP4-211ENST00000485450 SAFB2Q14151 953 aaKnown RBP eCLIP10.17□□□□□ -0.78
USP4-211ENST00000485450 PMFBP1Q8TBY8 1022 aa10.17□□□□□ -0.78
USP4-211ENST00000485450 FLT4P35916 1363 aa10.17□□□□□ -0.78
USP4-211ENST00000485450 GCP02774 474 aa10.16□□□□□ -0.78
USP4-211ENST00000485450 PIP4K2BP78356 416 aa10.16□□□□□ -0.78
USP4-211ENST00000485450 USP35Q9P2H5 1018 aa10.16□□□□□ -0.78
USP4-211ENST00000485450 FAM83GA6ND36 823 aa10.16□□□□□ -0.78
USP4-211ENST00000485450 IRX6P78412 446 aaPredicted RBP10.16□□□□□ -0.78
USP4-211ENST00000485450 CASZ1Q86V15 1759 aa10.16□□□□□ -0.78
USP4-211ENST00000485450 BTAF1O14981 1849 aa10.15□□□□□ -0.78
USP4-211ENST00000485450 ANP32CO43423 234 aa10.15□□□□□ -0.78
USP4-211ENST00000485450 NGDNQ8NEJ9 315 aaKnown RBP10.15□□□□□ -0.78
USP4-211ENST00000485450 SPATA31A1Q5TZJ5 1347 aa10.15□□□□□ -0.78
USP4-211ENST00000485450 LAMB4A4D0S4 1761 aa10.15□□□□□ -0.78
USP4-211ENST00000485450 ZNF772Q68DY9 489 aaPredicted RBP10.15□□□□□ -0.79
USP4-211ENST00000485450 UNC5CLQ8IV45 518 aa10.15□□□□□ -0.79
USP4-211ENST00000485450 IP6K1Q92551 441 aa10.15□□□□□ -0.79
USP4-211ENST00000485450 ZBTB47Q9UFB7 747 aaPredicted RBP10.15□□□□□ -0.79
USP4-211ENST00000485450 WDR17Q8IZU2 1322 aa10.14□□□□□ -0.79
USP4-211ENST00000485450 ANP32AP39687 249 aaKnown RBP10.14□□□□□ -0.79
USP4-211ENST00000485450 TAF7LQ5H9L4 462 aa10.14□□□□□ -0.79
USP4-211ENST00000485450 TUBGCP6Q96RT7 1819 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms