RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 RIMS1Q86UR5 1692 aaKnown RBP16.71■□□□□ 0.27
SEC13-216ENST00000479868 RGS3P49796 1198 aa16.71■□□□□ 0.27
SEC13-216ENST00000479868 NPM2Q86SE8 214 aaKnown RBP16.71■□□□□ 0.27
SEC13-216ENST00000479868 PCDHB15Q9Y5E8 787 aa16.7■□□□□ 0.26
SEC13-216ENST00000479868 AAMPQ13685 434 aa16.7■□□□□ 0.26
SEC13-216ENST00000479868 MVPQ14764 893 aaKnown RBP16.7■□□□□ 0.26
SEC13-216ENST00000479868 DZIP1LQ8IYY4 767 aaKnown RBP16.7■□□□□ 0.26
SEC13-216ENST00000479868 NOP58Q9Y2X3 529 aaKnown RBP16.7■□□□□ 0.26
SEC13-216ENST00000479868 LAS1LQ9Y4W2 734 aaKnown RBP16.7■□□□□ 0.26
SEC13-216ENST00000479868 PEAK1Q9H792 1746 aa16.69■□□□□ 0.26
SEC13-216ENST00000479868 PAK3O75914 559 aaPredicted RBP16.69■□□□□ 0.26
SEC13-216ENST00000479868 TRIM27P14373 513 aa16.69■□□□□ 0.26
SEC13-216ENST00000479868 KCNA6P17658 529 aa16.69■□□□□ 0.26
SEC13-216ENST00000479868 EIF4A2Q14240 407 aaKnown RBP16.69■□□□□ 0.26
SEC13-216ENST00000479868 FTSJ3Q8IY81 847 aaKnown RBP16.69■□□□□ 0.26
SEC13-216ENST00000479868 USP31Q70CQ4 1352 aa16.68■□□□□ 0.26
SEC13-216ENST00000479868 SOX12O15370 315 aa16.67■□□□□ 0.26
SEC13-216ENST00000479868 AEBP1Q8IUX7 1158 aa16.67■□□□□ 0.26
SEC13-216ENST00000479868 NOB1Q9ULX3 412 aaKnown RBP16.67■□□□□ 0.26
SEC13-216ENST00000479868 C8orf34Q49A92 452 aa16.66■□□□□ 0.26
SEC13-216ENST00000479868 ATF7IPQ6VMQ6 1270 aa16.66■□□□□ 0.26
SEC13-216ENST00000479868 HSP90AB2PQ58FF8 381 aa16.66■□□□□ 0.26
SEC13-216ENST00000479868 NGDNQ8NEJ9 315 aaKnown RBP16.66■□□□□ 0.26
SEC13-216ENST00000479868 TTC21AQ8NDW8 1320 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 FAM161AQ3B820 660 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 FAM83GA6ND36 823 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 CALD1Q05682 793 aaKnown RBP16.65■□□□□ 0.26
SEC13-216ENST00000479868 SULT6B1Q6IMI4 303 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 IFT57Q9NWB7 429 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 PIK3R4Q99570 1358 aa16.65■□□□□ 0.26
SEC13-216ENST00000479868 ZNF853P0CG23 659 aa16.64■□□□□ 0.25
SEC13-216ENST00000479868 ALDH1L2Q3SY69 923 aa16.64■□□□□ 0.25
SEC13-216ENST00000479868 GNAI1P63096 354 aa16.64■□□□□ 0.25
SEC13-216ENST00000479868 MBIPQ9NS73 344 aa16.64■□□□□ 0.25
SEC13-216ENST00000479868 PIK3C2AO00443 1686 aa16.64■□□□□ 0.25
SEC13-216ENST00000479868 KIF16BQ96L93 1317 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 RGPD1P0DJD0 1748 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 TSPYL6Q8N831 410 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 LMOD3Q0VAK6 560 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 DCTN1Q14203 1278 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 ZBTB47Q9UFB7 747 aaPredicted RBP16.63■□□□□ 0.25
SEC13-216ENST00000479868 FMN2Q9NZ56 1722 aa16.63■□□□□ 0.25
SEC13-216ENST00000479868 MAP3K19Q56UN5 1328 aa16.62■□□□□ 0.25
SEC13-216ENST00000479868 ITPRIPQ8IWB1 547 aa16.62■□□□□ 0.25
SEC13-216ENST00000479868 ANKARQ7Z5J8 1434 aa16.62■□□□□ 0.25
SEC13-216ENST00000479868 ZNF142P52746 1687 aaPredicted RBP16.62■□□□□ 0.25
SEC13-216ENST00000479868 VAMP4O75379 141 aa16.62■□□□□ 0.25
SEC13-216ENST00000479868 CHD2O14647 1828 aaKnown RBP16.61■□□□□ 0.25
SEC13-216ENST00000479868 TMEM57Q8N5G2 664 aa16.61■□□□□ 0.25
SEC13-216ENST00000479868 CFAP44Q96MT7 982 aa16.61■□□□□ 0.25
SEC13-216ENST00000479868 DDX19BQ9UMR2 479 aa16.61■□□□□ 0.25
SEC13-216ENST00000479868 ANKLE2Q86XL3 938 aa16.6■□□□□ 0.25
SEC13-216ENST00000479868 ZNF428Q96B54 188 aa16.6■□□□□ 0.25
SEC13-216ENST00000479868 RWDD1Q9H446 243 aaPredicted RBP16.6■□□□□ 0.25
SEC13-216ENST00000479868 ELL2O00472 640 aaPredicted RBP16.6■□□□□ 0.25
SEC13-216ENST00000479868 IPO8O15397 1037 aaKnown RBP16.6■□□□□ 0.25
SEC13-216ENST00000479868 ADAMTSL3P82987 1691 aa16.6■□□□□ 0.25
SEC13-216ENST00000479868 BRPF1P55201 1214 aaPredicted RBP16.59■□□□□ 0.25
SEC13-216ENST00000479868 VIRMAQ69YN4 1812 aaKnown RBP16.58■□□□□ 0.25
SEC13-216ENST00000479868 SBNO1A3KN83 1393 aa16.58■□□□□ 0.25
SEC13-216ENST00000479868 FLT4P35916 1363 aa16.58■□□□□ 0.25
SEC13-216ENST00000479868 MARF1Q9Y4F3 1742 aaKnown RBP16.58■□□□□ 0.24
SEC13-216ENST00000479868 C8orf58Q8NAV2 365 aa16.58■□□□□ 0.24
SEC13-216ENST00000479868 RBM33Q96EV2 1170 aaKnown RBP16.58■□□□□ 0.24
SEC13-216ENST00000479868 PDZRN3Q9UPQ7 1066 aa16.58■□□□□ 0.24
SEC13-216ENST00000479868 TWISTNBQ3B726 338 aaPredicted RBP16.57■□□□□ 0.24
SEC13-216ENST00000479868 MRPL50Q8N5N7 158 aaKnown RBP16.57■□□□□ 0.24
SEC13-216ENST00000479868 NLRP6P59044 892 aa16.57■□□□□ 0.24
SEC13-216ENST00000479868 NUTM2GQ5VZR2 741 aa16.57■□□□□ 0.24
SEC13-216ENST00000479868 BCL11AQ9H165 835 aa16.57■□□□□ 0.24
SEC13-216ENST00000479868 SETD1BQ9UPS6 1966 aaKnown RBP16.57■□□□□ 0.24
SEC13-216ENST00000479868 ARHGEF10O15013 1369 aa16.56■□□□□ 0.24
SEC13-216ENST00000479868 ZBTB40Q9NUA8 1239 aa16.56■□□□□ 0.24
SEC13-216ENST00000479868 AMPHP49418 695 aa16.55■□□□□ 0.24
SEC13-216ENST00000479868 MCM10Q7L590 875 aa16.55■□□□□ 0.24
SEC13-216ENST00000479868 HDAC1Q13547 482 aaPredicted RBP16.54■□□□□ 0.24
SEC13-216ENST00000479868 USP54Q70EL1 1684 aa16.53■□□□□ 0.24
SEC13-216ENST00000479868 ARHGAP45Q92619 1136 aa16.53■□□□□ 0.24
SEC13-216ENST00000479868 EYA1Q99502 592 aa16.53■□□□□ 0.24
SEC13-216ENST00000479868 KDRP35968 1356 aa16.53■□□□□ 0.24
SEC13-216ENST00000479868 ABTB2Q8N961 1025 aa16.52■□□□□ 0.24
SEC13-216ENST00000479868 IGSF1Q8N6C5 1336 aa16.52■□□□□ 0.24
SEC13-216ENST00000479868 CHL1O00533 1208 aa16.51■□□□□ 0.23
SEC13-216ENST00000479868 FOXO3O43524 673 aa16.51■□□□□ 0.23
SEC13-216ENST00000479868 PHF8Q9UPP1 1060 aa16.51■□□□□ 0.23
SEC13-216ENST00000479868 MTHFSDQ2M296 383 aaKnown RBP16.51■□□□□ 0.23
SEC13-216ENST00000479868 KRT24Q2M2I5 525 aa16.51■□□□□ 0.23
SEC13-216ENST00000479868 HOXC9P31274 260 aa16.5■□□□□ 0.23
SEC13-216ENST00000479868 DDRGK1Q96HY6 314 aa16.5■□□□□ 0.23
SEC13-216ENST00000479868 CRB1P82279 1406 aa16.49■□□□□ 0.23
SEC13-216ENST00000479868 ADGRL3Q9HAR2 1447 aa16.49■□□□□ 0.23
SEC13-216ENST00000479868 ABCC4O15439 1325 aa16.49■□□□□ 0.23
SEC13-216ENST00000479868 ZBTB7BO15156 539 aaPredicted RBP16.49■□□□□ 0.23
SEC13-216ENST00000479868 SEC24BO95487 1268 aa16.49■□□□□ 0.23
SEC13-216ENST00000479868 C14orf37Q86TY3 774 aa16.49■□□□□ 0.23
SEC13-216ENST00000479868 NPHP4O75161 1426 aaPredicted RBP16.49■□□□□ 0.23
SEC13-216ENST00000479868 SMC5Q8IY18 1101 aa16.48■□□□□ 0.23
SEC13-216ENST00000479868 KIF24Q5T7B8 1368 aa16.47■□□□□ 0.23
SEC13-216ENST00000479868 NWD1Q149M9 1564 aa16.47■□□□□ 0.23
SEC13-216ENST00000479868 USP19O94966 1318 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms