RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 SHPRHQ149N8 1683 aa25.79■■□□□ 1.72
SDF4-206ENST00000478938 VGFO15240 615 aaPredicted RBP25.79■■□□□ 1.72
SDF4-206ENST00000478938 EXOSC9Q06265 439 aaKnown RBP25.79■■□□□ 1.72
SDF4-206ENST00000478938 SYNJ2O15056 1496 aa25.78■■□□□ 1.72
SDF4-206ENST00000478938 TULP2O00295 520 aa25.78■■□□□ 1.72
SDF4-206ENST00000478938 KIAA0556O60303 1618 aa25.78■■□□□ 1.72
SDF4-206ENST00000478938 UVSSAQ2YD98 709 aa25.77■■□□□ 1.72
SDF4-206ENST00000478938 SYAP1Q96A49 352 aaPredicted RBP25.77■■□□□ 1.72
SDF4-206ENST00000478938 CDC42BPAQ5VT25 1732 aa25.77■■□□□ 1.72
SDF4-206ENST00000478938 PLCB2Q00722 1185 aa25.77■■□□□ 1.72
SDF4-206ENST00000478938 MORC2Q9Y6X9 1032 aaPredicted RBP25.77■■□□□ 1.72
SDF4-206ENST00000478938 FOXD4L6Q3SYB3 417 aaPredicted RBP25.76■■□□□ 1.71
SDF4-206ENST00000478938 FOXD4L3Q6VB84 417 aaPredicted RBP25.76■■□□□ 1.71
SDF4-206ENST00000478938 ZBTB9Q96C00 473 aa25.76■■□□□ 1.71
SDF4-206ENST00000478938 TSPY4P0CV99 314 aa25.76■■□□□ 1.71
SDF4-206ENST00000478938 TSPY10P0CW01 314 aa25.76■■□□□ 1.71
SDF4-206ENST00000478938 RAPGEF6Q8TEU7 1601 aa25.76■■□□□ 1.71
SDF4-206ENST00000478938 GADD45BO75293 160 aaPredicted RBP25.75■■□□□ 1.71
SDF4-206ENST00000478938 HCLS1P14317 486 aaPredicted RBP25.75■■□□□ 1.71
SDF4-206ENST00000478938 FAM184AQ8NB25 1140 aa25.75■■□□□ 1.71
SDF4-206ENST00000478938 SHANK2Q9UPX8 1470 aa25.75■■□□□ 1.71
SDF4-206ENST00000478938 GDPD2Q9HCC8 539 aa25.75■■□□□ 1.71
SDF4-206ENST00000478938 RGS22Q8NE09 1264 aa25.74■■□□□ 1.71
SDF4-206ENST00000478938 KIF18AQ8NI77 898 aa25.74■■□□□ 1.71
SDF4-206ENST00000478938 GSPT1P15170 499 aaKnown RBP25.74■■□□□ 1.71
SDF4-206ENST00000478938 C1orf115Q9H7X2 142 aa25.74■■□□□ 1.71
SDF4-206ENST00000478938 CCDC27Q2M243 656 aa25.73■■□□□ 1.71
SDF4-206ENST00000478938 TEX2Q8IWB9 1127 aa25.73■■□□□ 1.71
SDF4-206ENST00000478938 IQGAP1P46940 1657 aa25.73■■□□□ 1.71
SDF4-206ENST00000478938 USP26Q9BXU7 913 aa25.73■■□□□ 1.71
SDF4-206ENST00000478938 CALCOCO1Q9P1Z2 691 aa25.73■■□□□ 1.71
SDF4-206ENST00000478938 ST18O60284 1047 aa25.72■■□□□ 1.71
SDF4-206ENST00000478938 PHF14O94880 888 aa25.72■■□□□ 1.71
SDF4-206ENST00000478938 FBLN2P98095 1184 aa25.72■■□□□ 1.71
SDF4-206ENST00000478938 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.72■■□□□ 1.716e-9■■□□□ 12.6
SDF4-206ENST00000478938 CHD1O14646 1710 aa25.71■■□□□ 1.71
SDF4-206ENST00000478938 SMARCA5O60264 1052 aaPredicted RBP25.71■■□□□ 1.71
SDF4-206ENST00000478938 TPRNQ4KMQ1 711 aa25.71■■□□□ 1.71
SDF4-206ENST00000478938 ANKRD36BQ8N2N9 1353 aa25.71■■□□□ 1.71
SDF4-206ENST00000478938 SPC24Q8NBT2 197 aa25.71■■□□□ 1.71
SDF4-206ENST00000478938 SECISBP2LQ93073 1101 aaKnown RBP25.71■■□□□ 1.71
SDF4-206ENST00000478938 PPIP5K1Q6PFW1 1433 aa25.7■■□□□ 1.71
SDF4-206ENST00000478938 KRT222Q8N1A0 295 aa25.7■■□□□ 1.71
SDF4-206ENST00000478938 KDM4AO75164 1064 aa25.69■■□□□ 1.7
SDF4-206ENST00000478938 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.68■■□□□ 1.7
SDF4-206ENST00000478938 AP5Z1O43299 807 aa25.68■■□□□ 1.7
SDF4-206ENST00000478938 CHMP7Q8WUX9 453 aaPredicted RBP25.68■■□□□ 1.7
SDF4-206ENST00000478938 ST7Q9NRC1 585 aa25.68■■□□□ 1.7
SDF4-206ENST00000478938 GCC1Q96CN9 775 aa25.67■■□□□ 1.7
SDF4-206ENST00000478938 BRD1O95696 1058 aa25.67■■□□□ 1.7
SDF4-206ENST00000478938 CT47B1P0C2W7 299 aaPredicted RBP25.67■■□□□ 1.7
SDF4-206ENST00000478938 SYCP1Q15431 976 aa25.67■■□□□ 1.7
SDF4-206ENST00000478938 CEP152O94986 1710 aa25.67■■□□□ 1.7
SDF4-206ENST00000478938 HNRNPMP52272 730 aaKnown RBP eCLIP25.66■■□□□ 1.71e-6■■□□□ 13.2
SDF4-206ENST00000478938 NOS1P29475 1434 aa25.66■■□□□ 1.7
SDF4-206ENST00000478938 C16orf45Q96MC5 204 aaPredicted RBP25.65■■□□□ 1.7
SDF4-206ENST00000478938 CHRM1P11229 460 aaPredicted RBP25.65■■□□□ 1.7
SDF4-206ENST00000478938 KDM5AP29375 1690 aaKnown RBP25.64■■□□□ 1.7
SDF4-206ENST00000478938 FEZ2Q9UHY8 353 aaPredicted RBP25.64■■□□□ 1.7
SDF4-206ENST00000478938 SCAF11Q99590 1463 aaKnown RBP25.64■■□□□ 1.7
SDF4-206ENST00000478938 MORC1Q86VD1 984 aa25.64■■□□□ 1.69
SDF4-206ENST00000478938 USP48Q86UV5 1035 aa25.63■■□□□ 1.69
SDF4-206ENST00000478938 SMTNL1A8MU46 457 aa25.63■■□□□ 1.69
SDF4-206ENST00000478938 PLB1Q6P1J6 1458 aa25.62■■□□□ 1.69
SDF4-206ENST00000478938 CHMP4CQ96CF2 233 aa25.62■■□□□ 1.69
SDF4-206ENST00000478938 KMT5BQ4FZB7 885 aa25.6■■□□□ 1.69
SDF4-206ENST00000478938 SIRT2Q8IXJ6 389 aa25.6■■□□□ 1.69
SDF4-206ENST00000478938 TMX3Q96JJ7 454 aa25.6■■□□□ 1.69
SDF4-206ENST00000478938 CCDC183Q5T5S1 534 aa25.6■■□□□ 1.69
SDF4-206ENST00000478938 PTGS1P23219 599 aa25.59■■□□□ 1.69
SDF4-206ENST00000478938 MADDQ8WXG6 1647 aa25.59■■□□□ 1.69
SDF4-206ENST00000478938 HNRNPH2P55795 449 aaKnown RBP25.59■■□□□ 1.69
SDF4-206ENST00000478938 PLEKHM2Q8IWE5 1019 aa25.59■■□□□ 1.69
SDF4-206ENST00000478938 IPO8O15397 1037 aaKnown RBP25.58■■□□□ 1.69
SDF4-206ENST00000478938 TSPYL1Q9H0U9 437 aa25.58■■□□□ 1.69
SDF4-206ENST00000478938 U2AF1L5P0DN76 240 aaPredicted RBP25.57■■□□□ 1.68
SDF4-206ENST00000478938 MTHFSP49914 203 aa25.57■■□□□ 1.68
SDF4-206ENST00000478938 U2AF1Q01081 240 aaKnown RBP eCLIP25.57■■□□□ 1.68
SDF4-206ENST00000478938 INTS3Q68E01 1043 aaKnown RBP25.57■■□□□ 1.68
SDF4-206ENST00000478938 NOL8Q76FK4 1167 aaKnown RBP25.57■■□□□ 1.68
SDF4-206ENST00000478938 CCDC112Q8NEF3 446 aa25.57■■□□□ 1.68
SDF4-206ENST00000478938 TPM3P06753 285 aa25.56■■□□□ 1.68
SDF4-206ENST00000478938 TNNT1P13805 278 aa25.56■■□□□ 1.68
SDF4-206ENST00000478938 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.56■■□□□ 1.68
SDF4-206ENST00000478938 V9GYY5 206 aaPredicted RBP25.56■■□□□ 1.68
SDF4-206ENST00000478938 CLTCL1P53675 1640 aa25.56■■□□□ 1.68
SDF4-206ENST00000478938 TTC22Q5TAA0 569 aa25.56■■□□□ 1.68
SDF4-206ENST00000478938 U2SURPO15042 1029 aaKnown RBP25.55■■□□□ 1.68
SDF4-206ENST00000478938 ZBTB7BO15156 539 aaPredicted RBP25.55■■□□□ 1.68
SDF4-206ENST00000478938 RAD51AP2Q09MP3 1159 aa25.55■■□□□ 1.68
SDF4-206ENST00000478938 ZNF397Q8NF99 534 aaPredicted RBP25.55■■□□□ 1.68
SDF4-206ENST00000478938 LRMPQ12912 555 aa25.54■■□□□ 1.68
SDF4-206ENST00000478938 IFT57Q9NWB7 429 aa25.54■■□□□ 1.68
SDF4-206ENST00000478938 FAM53CQ9NYF3 392 aa25.54■■□□□ 1.68
SDF4-206ENST00000478938 NEK4P51957 841 aa25.54■■□□□ 1.68
SDF4-206ENST00000478938 C16orf71Q8IYS4 520 aaPredicted RBP25.54■■□□□ 1.68
SDF4-206ENST00000478938 MX1P20591 662 aa25.53■■□□□ 1.68
SDF4-206ENST00000478938 RBM6P78332 1123 aaKnown RBP25.53■■□□□ 1.68
SDF4-206ENST00000478938 ABCC11Q96J66 1382 aa25.53■■□□□ 1.68
SDF4-206ENST00000478938 GOLGA6L6A8MZA4 724 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms