RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 MYT1Q01538 1121 aa21.63■■□□□ 1.05
HMGA1-206ENST00000478214 USP35Q9P2H5 1018 aa21.63■■□□□ 1.05
HMGA1-206ENST00000478214 FYB1O15117 783 aa21.62■■□□□ 1.05
HMGA1-206ENST00000478214 COG3Q96JB2 828 aa21.62■■□□□ 1.05
HMGA1-206ENST00000478214 GGNBP2Q9H3C7 697 aa21.61■■□□□ 1.05
HMGA1-206ENST00000478214 COL18A1P39060 1754 aa21.61■■□□□ 1.05
HMGA1-206ENST00000478214 NSD3Q9BZ95 1437 aa21.6■■□□□ 1.05
HMGA1-206ENST00000478214 CRB1P82279 1406 aa21.57■■□□□ 1.04
HMGA1-206ENST00000478214 FBLN1P23142 703 aa21.57■■□□□ 1.04
HMGA1-206ENST00000478214 KRT27Q7Z3Y8 459 aa21.57■■□□□ 1.04
HMGA1-206ENST00000478214 TCP11L2Q8N4U5 519 aa21.57■■□□□ 1.04
HMGA1-206ENST00000478214 WDR17Q8IZU2 1322 aa21.56■■□□□ 1.04
HMGA1-206ENST00000478214 BARGINQ6ZT62 677 aa21.56■■□□□ 1.04
HMGA1-206ENST00000478214 TOM1L2Q6ZVM7 507 aa21.56■■□□□ 1.04
HMGA1-206ENST00000478214 BRWD3Q6RI45 1802 aa21.55■■□□□ 1.04
HMGA1-206ENST00000478214 EP400Q96L91 3159 aa21.54■■□□□ 1.04
HMGA1-206ENST00000478214 CSB-PGBD3P0DP91 1061 aa21.54■■□□□ 1.04
HMGA1-206ENST00000478214 PANK3Q9H999 370 aa21.54■■□□□ 1.04
HMGA1-206ENST00000478214 KIF7Q2M1P5 1343 aa21.54■■□□□ 1.04
HMGA1-206ENST00000478214 THSD7AQ9UPZ6 1657 aa21.53■■□□□ 1.04
HMGA1-206ENST00000478214 THRAP3Q9Y2W1 955 aaKnown RBP21.53■■□□□ 1.04
HMGA1-206ENST00000478214 ABCC6O95255 1503 aa21.53■■□□□ 1.04
HMGA1-206ENST00000478214 MAP3K19Q56UN5 1328 aa21.53■■□□□ 1.04
HMGA1-206ENST00000478214 IP6K1Q92551 441 aa21.51■■□□□ 1.03
HMGA1-206ENST00000478214 ERBB3P21860 1342 aa21.51■■□□□ 1.03
HMGA1-206ENST00000478214 CGNL1Q0VF96 1302 aa21.51■■□□□ 1.03
HMGA1-206ENST00000478214 RGPD5Q99666 1765 aa21.51■■□□□ 1.03
HMGA1-206ENST00000478214 RRS1Q15050 365 aaKnown RBP21.5■■□□□ 1.03
HMGA1-206ENST00000478214 FAM182BQ5T319 152 aa21.5■■□□□ 1.03
HMGA1-206ENST00000478214 ANKRD24Q8TF21 1146 aa21.5■■□□□ 1.03
HMGA1-206ENST00000478214 CARD10Q9BWT7 1032 aa21.5■■□□□ 1.03
HMGA1-206ENST00000478214 LTN1O94822 1766 aa21.49■■□□□ 1.03
HMGA1-206ENST00000478214 AMPHP49418 695 aa21.49■■□□□ 1.03
HMGA1-206ENST00000478214 KIF20BQ96Q89 1820 aa21.48■■□□□ 1.03
HMGA1-206ENST00000478214 BLMP54132 1417 aaPredicted RBP21.47■■□□□ 1.03
HMGA1-206ENST00000478214 HOXC9P31274 260 aa21.47■■□□□ 1.03
HMGA1-206ENST00000478214 NLRP2Q9NX02 1062 aa21.47■■□□□ 1.03
HMGA1-206ENST00000478214 PDE3BQ13370 1112 aa21.46■■□□□ 1.03
HMGA1-206ENST00000478214 LTV1Q96GA3 475 aaPredicted RBP21.46■■□□□ 1.03
HMGA1-206ENST00000478214 CCDC125Q86Z20 511 aa21.44■■□□□ 1.02
HMGA1-206ENST00000478214 CCDC7Q96M83 1385 aa21.44■■□□□ 1.02
HMGA1-206ENST00000478214 RTL1A6NKG5 1358 aa21.43■■□□□ 1.02
HMGA1-206ENST00000478214 WASHC2AQ641Q2 1341 aa21.42■■□□□ 1.02
HMGA1-206ENST00000478214 DISP2A7MBM2 1401 aa21.41■■□□□ 1.02
HMGA1-206ENST00000478214 DDB1Q16531 1140 aa21.41■■□□□ 1.02
HMGA1-206ENST00000478214 CDCA7Q9BWT1 371 aaPredicted RBP21.41■■□□□ 1.02
HMGA1-206ENST00000478214 KNSTRNQ9Y448 316 aa21.41■■□□□ 1.02
HMGA1-206ENST00000478214 EMILIN1Q9Y6C2 1016 aa21.41■■□□□ 1.02
HMGA1-206ENST00000478214 PARP4Q9UKK3 1724 aaKnown RBP21.4■■□□□ 1.02
HMGA1-206ENST00000478214 TNNT2P45379 298 aaPredicted RBP21.39■■□□□ 1.01
HMGA1-206ENST00000478214 HSP90AB2PQ58FF8 381 aa21.39■■□□□ 1.01
HMGA1-206ENST00000478214 FAM196AQ6ZSG2 479 aa21.39■■□□□ 1.01
HMGA1-206ENST00000478214 FLT4P35916 1363 aa21.38■■□□□ 1.01
HMGA1-206ENST00000478214 SF3B2Q13435 895 aaKnown RBP21.38■■□□□ 1.01
HMGA1-206ENST00000478214 NSD2O96028 1365 aa21.37■■□□□ 1.01
HMGA1-206ENST00000478214 INSRP06213 1382 aa21.37■■□□□ 1.01
HMGA1-206ENST00000478214 KIF24Q5T7B8 1368 aa21.37■■□□□ 1.01
HMGA1-206ENST00000478214 PPM1GO15355 546 aaPredicted RBP21.37■■□□□ 1.01
HMGA1-206ENST00000478214 DEFB132Q7Z7B7 95 aa21.37■■□□□ 1.01
HMGA1-206ENST00000478214 LRRC37A3O60309 1634 aa21.37■■□□□ 1.01
HMGA1-206ENST00000478214 PEAK1Q9H792 1746 aa21.36■■□□□ 1.01
HMGA1-206ENST00000478214 IL2RBP14784 551 aa21.36■■□□□ 1.01
HMGA1-206ENST00000478214 POLKQ9UBT6 870 aa21.36■■□□□ 1.01
HMGA1-206ENST00000478214 EXOC5O00471 708 aa21.35■■□□□ 1.01
HMGA1-206ENST00000478214 AMER1Q5JTC6 1135 aaPredicted RBP21.35■■□□□ 1.01
HMGA1-206ENST00000478214 MARCH10Q8NA82 808 aaPredicted RBP21.35■■□□□ 1.01
HMGA1-206ENST00000478214 WNK3Q9BYP7 1800 aa21.34■■□□□ 1.01
HMGA1-206ENST00000478214 PER1O15534 1290 aaPredicted RBP21.34■■□□□ 1.01
HMGA1-206ENST00000478214 TRIM37O94972 964 aa21.34■■□□□ 1.01
HMGA1-206ENST00000478214 NBPF6Q5VWK0 638 aa21.34■■□□□ 1.01
HMGA1-206ENST00000478214 MORC1Q86VD1 984 aa21.34■■□□□ 1.01
HMGA1-206ENST00000478214 NBPF4Q96M43 638 aa21.34■■□□□ 1.01
HMGA1-206ENST00000478214 SMG6Q86US8 1419 aaKnown RBP21.33■■□□□ 1.01
HMGA1-206ENST00000478214 ANKRD26Q9UPS8 1709 aa21.32■■□□□ 1
HMGA1-206ENST00000478214 OVOS2A0A0G2JMS6 1433 aa21.32■■□□□ 1
HMGA1-206ENST00000478214 USHBP1Q8N6Y0 703 aa21.32■■□□□ 1
HMGA1-206ENST00000478214 TNS2Q63HR2 1409 aa21.31■■□□□ 1
HMGA1-206ENST00000478214 FAM208AQ9UK61 1670 aaKnown RBP21.31■■□□□ 1
HMGA1-206ENST00000478214 BAG6P46379 1132 aa21.3■■□□□ 1
HMGA1-206ENST00000478214 EN1Q05925 392 aaPredicted RBP21.28■■□□□ 1
HMGA1-206ENST00000478214 RGPD1P0DJD0 1748 aa21.27■■□□□ 1
HMGA1-206ENST00000478214 CC2D1BQ5T0F9 858 aaKnown RBP21.27■■□□□ 1
HMGA1-206ENST00000478214 RGPD2P0DJD1 1756 aa21.27■■□□□ 1
HMGA1-206ENST00000478214 MAP2P11137 1827 aaKnown RBP21.27■□□□□ 0.99
HMGA1-206ENST00000478214 MEGF6O75095 1541 aa21.26■□□□□ 0.99
HMGA1-206ENST00000478214 APBA3O96018 575 aa21.26■□□□□ 0.99
HMGA1-206ENST00000478214 TNS1Q9HBL0 1735 aaKnown RBP21.24■□□□□ 0.99
HMGA1-206ENST00000478214 BCL9O00512 1426 aa21.24■□□□□ 0.99
HMGA1-206ENST00000478214 CNGB1Q14028 1251 aaPredicted RBP21.24■□□□□ 0.99
HMGA1-206ENST00000478214 EIF4A2Q14240 407 aaKnown RBP21.24■□□□□ 0.99
HMGA1-206ENST00000478214 PTF1AQ7RTS3 328 aa21.24■□□□□ 0.99
HMGA1-206ENST00000478214 DDX54Q8TDD1 881 aaKnown RBP21.24■□□□□ 0.99
HMGA1-206ENST00000478214 RAPGEF4Q8WZA2 1011 aa21.24■□□□□ 0.99
HMGA1-206ENST00000478214 EYA1Q99502 592 aa21.23■□□□□ 0.99
HMGA1-206ENST00000478214 TATP17735 454 aaPredicted RBP21.22■□□□□ 0.99
HMGA1-206ENST00000478214 EZH2Q15910 746 aaKnown RBP21.22■□□□□ 0.99
HMGA1-206ENST00000478214 ZCRB1Q8TBF4 217 aaKnown RBP21.22■□□□□ 0.99
HMGA1-206ENST00000478214 CAMKK2Q96RR4 588 aa21.22■□□□□ 0.99
HMGA1-206ENST00000478214 NPC1L1Q9UHC9 1359 aa21.22■□□□□ 0.99
HMGA1-206ENST00000478214 BCL11BQ9C0K0 894 aaPredicted RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms