RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 POGKQ9P215 609 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 PHF8Q9UPP1 1060 aa13.21□□□□□ -0.29
SMC4-213ENST00000472282 ITSN1Q15811 1721 aa13.21□□□□□ -0.3
SMC4-213ENST00000472282 CRYBG1Q9Y4K1 1723 aa13.21□□□□□ -0.3
SMC4-213ENST00000472282 MINK1Q8N4C8 1332 aaPredicted RBP13.2□□□□□ -0.3
SMC4-213ENST00000472282 PRR36Q9H6K5 1346 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 G3V3G9 751 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 KRT28Q7Z3Y7 464 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 UPF1Q92900 1129 aaKnown RBP eCLIP13.2□□□□□ -0.31e-11■■■■□ 26.2
SMC4-213ENST00000472282 USP21Q9UK80 565 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 BCL9LQ86UU0 1499 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 ANKARQ7Z5J8 1434 aa13.2□□□□□ -0.3
SMC4-213ENST00000472282 TULP4Q9NRJ4 1543 aa13.19□□□□□ -0.3
SMC4-213ENST00000472282 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
SMC4-213ENST00000472282 FNBP4Q8N3X1 1017 aaPredicted RBP13.19□□□□□ -0.3
SMC4-213ENST00000472282 MARVELD3Q96A59 401 aa13.19□□□□□ -0.3
SMC4-213ENST00000472282 ATRNO75882 1429 aa13.19□□□□□ -0.3
SMC4-213ENST00000472282 TNS3Q68CZ2 1445 aa13.19□□□□□ -0.3
SMC4-213ENST00000472282 TOPAZ1Q8N9V7 1692 aa13.18□□□□□ -0.3
SMC4-213ENST00000472282 BRWD3Q6RI45 1802 aa13.18□□□□□ -0.3
SMC4-213ENST00000472282 NEUROD1Q13562 356 aa13.18□□□□□ -0.3
SMC4-213ENST00000472282 PMFBP1Q8TBY8 1022 aa13.18□□□□□ -0.3
SMC4-213ENST00000472282 TMEM121BQ9BXQ6 578 aaPredicted RBP13.18□□□□□ -0.3
SMC4-213ENST00000472282 GLI3P10071 1580 aa13.18□□□□□ -0.3
SMC4-213ENST00000472282 CABLES1Q8TDN4 633 aa13.17□□□□□ -0.3
SMC4-213ENST00000472282 NWD2Q9ULI1 1742 aa13.16□□□□□ -0.3
SMC4-213ENST00000472282 SLIT2O94813 1529 aa13.16□□□□□ -0.3
SMC4-213ENST00000472282 NRAPQ86VF7 1730 aa13.16□□□□□ -0.3
SMC4-213ENST00000472282 ATP7BP35670 1465 aa13.16□□□□□ -0.3
SMC4-213ENST00000472282 STAC3Q96MF2 364 aa13.15□□□□□ -0.3
SMC4-213ENST00000472282 TRPC5Q9UL62 973 aaPredicted RBP13.15□□□□□ -0.3
SMC4-213ENST00000472282 SBNO1A3KN83 1393 aa13.15□□□□□ -0.3
SMC4-213ENST00000472282 QRICH2Q9H0J4 1663 aa13.15□□□□□ -0.31
SMC4-213ENST00000472282 TRPM1Q7Z4N2 1603 aa13.14□□□□□ -0.31
SMC4-213ENST00000472282 WASLO00401 505 aaPredicted RBP13.14□□□□□ -0.31
SMC4-213ENST00000472282 NBPF1Q3BBV0 1214 aa13.14□□□□□ -0.31
SMC4-213ENST00000472282 CCER1Q8TC90 406 aaPredicted RBP13.14□□□□□ -0.31
SMC4-213ENST00000472282 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
SMC4-213ENST00000472282 PSME1Q06323 249 aa13.13□□□□□ -0.31
SMC4-213ENST00000472282 PHRF1Q9P1Y6 1649 aaKnown RBP13.13□□□□□ -0.31
SMC4-213ENST00000472282 TONSLQ96HA7 1378 aa13.12□□□□□ -0.31
SMC4-213ENST00000472282 LMOD2Q6P5Q4 547 aa13.12□□□□□ -0.31
SMC4-213ENST00000472282 L3MBTL2Q969R5 705 aa13.12□□□□□ -0.31
SMC4-213ENST00000472282 RALGAPBQ86X10 1494 aa13.1□□□□□ -0.31
SMC4-213ENST00000472282 ARHGEF10O15013 1369 aa13.1□□□□□ -0.31
SMC4-213ENST00000472282 EIF3AQ14152 1382 aaKnown RBP13.1□□□□□ -0.31
SMC4-213ENST00000472282 COL14A1Q05707 1796 aaKnown RBP13.1□□□□□ -0.31
SMC4-213ENST00000472282 GJD4Q96KN9 370 aaPredicted RBP13.1□□□□□ -0.31
SMC4-213ENST00000472282 UNC5CLQ8IV45 518 aa13.09□□□□□ -0.31
SMC4-213ENST00000472282 NUDT16Q96DE0 195 aaKnown RBP13.09□□□□□ -0.31
SMC4-213ENST00000472282 HAP1P54257 671 aaPredicted RBP13.08□□□□□ -0.32
SMC4-213ENST00000472282 CDK19Q9BWU1 502 aa13.08□□□□□ -0.32
SMC4-213ENST00000472282 BOLA1Q9Y3E2 137 aa13.08□□□□□ -0.32
SMC4-213ENST00000472282 GPRASP1Q5JY77 1395 aa13.07□□□□□ -0.32
SMC4-213ENST00000472282 FAM83GA6ND36 823 aa13.07□□□□□ -0.32
SMC4-213ENST00000472282 NGDNQ8NEJ9 315 aaKnown RBP13.07□□□□□ -0.32
SMC4-213ENST00000472282 ATAD2Q6PL18 1390 aa13.07□□□□□ -0.32
SMC4-213ENST00000472282 RIOK3O14730 519 aaKnown RBP13.06□□□□□ -0.32
SMC4-213ENST00000472282 DPY19L2Q6NUT2 758 aa13.05□□□□□ -0.32
SMC4-213ENST00000472282 KRTAP3-3Q9BYR6 98 aa13.05□□□□□ -0.32
SMC4-213ENST00000472282 KRTAP3-2Q9BYR7 98 aa13.05□□□□□ -0.32
SMC4-213ENST00000472282 POLR3AO14802 1390 aaPredicted RBP13.05□□□□□ -0.32
SMC4-213ENST00000472282 NRKQ7Z2Y5 1582 aa13.04□□□□□ -0.32
SMC4-213ENST00000472282 POTEB3A0JP26 581 aa13.04□□□□□ -0.32
SMC4-213ENST00000472282 POTEBQ6S5H4 581 aa13.04□□□□□ -0.32
SMC4-213ENST00000472282 ACEP12821 1306 aa13.04□□□□□ -0.32
SMC4-213ENST00000472282 CENPJQ9HC77 1338 aaPredicted RBP13.04□□□□□ -0.32
SMC4-213ENST00000472282 AKAP12Q02952 1782 aa13.03□□□□□ -0.32
SMC4-213ENST00000472282 VPS72Q15906 364 aa13.03□□□□□ -0.32
SMC4-213ENST00000472282 EFCAB3Q8N7B9 438 aa13.03□□□□□ -0.32
SMC4-213ENST00000472282 NBPF8Q3BBV2 869 aa13.02□□□□□ -0.33
SMC4-213ENST00000472282 NUTM2GQ5VZR2 741 aa13.02□□□□□ -0.33
SMC4-213ENST00000472282 PPIP5K1Q6PFW1 1433 aa13.02□□□□□ -0.33
SMC4-213ENST00000472282 PLEKHG3A1L390 1219 aa13.01□□□□□ -0.33
SMC4-213ENST00000472282 BTG4Q9NY30 223 aa13.01□□□□□ -0.33
SMC4-213ENST00000472282 TAOK2Q9UL54 1235 aa13.01□□□□□ -0.33
SMC4-213ENST00000472282 CCDC9Q9Y3X0 531 aaKnown RBP13.01□□□□□ -0.33
SMC4-213ENST00000472282 LMO7Q8WWI1 1683 aa13.01□□□□□ -0.33
SMC4-213ENST00000472282 THSD7AQ9UPZ6 1657 aa13.01□□□□□ -0.33
SMC4-213ENST00000472282 PIK3C2AO00443 1686 aa13□□□□□ -0.33
SMC4-213ENST00000472282 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
SMC4-213ENST00000472282 SEPT12Q8IYM1 358 aa13□□□□□ -0.33
SMC4-213ENST00000472282 ROCK2O75116 1388 aaKnown RBP12.99□□□□□ -0.33
SMC4-213ENST00000472282 KIAA0232Q92628 1395 aa12.99□□□□□ -0.33
SMC4-213ENST00000472282 TIMELESSQ9UNS1 1208 aa12.99□□□□□ -0.33
SMC4-213ENST00000472282 RGPD5Q99666 1765 aa12.99□□□□□ -0.33
SMC4-213ENST00000472282 SOX12O15370 315 aa12.98□□□□□ -0.33
SMC4-213ENST00000472282 ONECUT3O60422 494 aaPredicted RBP12.98□□□□□ -0.33
SMC4-213ENST00000472282 CHRNA2Q15822 529 aa12.98□□□□□ -0.33
SMC4-213ENST00000472282 CAMTA1Q9Y6Y1 1673 aa12.97□□□□□ -0.33
SMC4-213ENST00000472282 EMP3P54852 163 aa12.97□□□□□ -0.33
SMC4-213ENST00000472282 ZC3H6P61129 1189 aaKnown RBP12.97□□□□□ -0.33
SMC4-213ENST00000472282 PRDM11Q9NQV5 511 aa12.97□□□□□ -0.33
SMC4-213ENST00000472282 MON2Q7Z3U7 1717 aa12.96□□□□□ -0.33
SMC4-213ENST00000472282 TNS1Q9HBL0 1735 aaKnown RBP12.96□□□□□ -0.33
SMC4-213ENST00000472282 FAM98CQ17RN3 349 aaKnown RBP12.96□□□□□ -0.33
SMC4-213ENST00000472282 EP400Q96L91 3159 aa12.96□□□□□ -0.33
SMC4-213ENST00000472282 COL18A1P39060 1754 aa12.96□□□□□ -0.34
SMC4-213ENST00000472282 USP6P35125 1406 aa12.96□□□□□ -0.34
SMC4-213ENST00000472282 USP19O94966 1318 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms