RNA–Protein interactions for RNA: ENST00000469080.5

USP11-206, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 1 (best)

Gene USP11, Length 3,467 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-206ENST00000469080 TRIM35Q9UPQ4 493 aa15.36■□□□□ 0.05
USP11-206ENST00000469080 IPO8O15397 1037 aaKnown RBP15.35■□□□□ 0.05
USP11-206ENST00000469080 CDK11BP21127 795 aaKnown RBP15.35■□□□□ 0.05
USP11-206ENST00000469080 F6X3S4 739 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 BLMP54132 1417 aaPredicted RBP15.34■□□□□ 0.05
USP11-206ENST00000469080 PPIP5K1Q6PFW1 1433 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 WDR63Q8IWG1 891 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 MROH1Q8NDA8 1641 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 ZNF830Q96NB3 372 aaPredicted RBP15.34■□□□□ 0.05
USP11-206ENST00000469080 MS4A1P11836 297 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 KCNA6P17658 529 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 ATF7IPQ6VMQ6 1270 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 C8orf58Q8NAV2 365 aa15.34■□□□□ 0.05
USP11-206ENST00000469080 TNRQ92752 1358 aa15.33■□□□□ 0.05
USP11-206ENST00000469080 HAP1P54257 671 aaPredicted RBP15.33■□□□□ 0.05
USP11-206ENST00000469080 SMAP1Q8IYB5 467 aaPredicted RBP15.33■□□□□ 0.05
USP11-206ENST00000469080 TSPYL4Q9UJ04 414 aa15.33■□□□□ 0.04
USP11-206ENST00000469080 ZNF521Q96K83 1311 aa15.33■□□□□ 0.04
USP11-206ENST00000469080 MVPQ14764 893 aaKnown RBP15.33■□□□□ 0.04
USP11-206ENST00000469080 POLR3AO14802 1390 aaPredicted RBP15.32■□□□□ 0.04
USP11-206ENST00000469080 ZC3H6P61129 1189 aaKnown RBP15.32■□□□□ 0.04
USP11-206ENST00000469080 SETD1BQ9UPS6 1966 aaKnown RBP15.32■□□□□ 0.04
USP11-206ENST00000469080 PDE3AQ14432 1141 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 NFE2L2Q16236 605 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 MBIPQ9NS73 344 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 KDM5AP29375 1690 aaKnown RBP15.31■□□□□ 0.04
USP11-206ENST00000469080 DDX17Q92841 729 aaKnown RBP15.31■□□□□ 0.04
USP11-206ENST00000469080 FCHSD2O94868 740 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 ANXA1P04083 346 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 NOL8Q76FK4 1167 aaKnown RBP15.31■□□□□ 0.04
USP11-206ENST00000469080 ZNF330Q9Y3S2 320 aaPredicted RBP15.31■□□□□ 0.04
USP11-206ENST00000469080 ZMYM4Q5VZL5 1548 aa15.31■□□□□ 0.04
USP11-206ENST00000469080 CSB-PGBD3P0DP91 1061 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 PPP4R3BQ5MIZ7 849 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 THEMISQ8N1K5 641 aaPredicted RBP15.3■□□□□ 0.04
USP11-206ENST00000469080 CHMP4AQ9BY43 222 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 MROH2AA6NES4 1674 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 PRR36Q9H6K5 1346 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 SLC4A2P04920 1241 aa15.3■□□□□ 0.04
USP11-206ENST00000469080 EIF4A2Q14240 407 aaKnown RBP15.3■□□□□ 0.04
USP11-206ENST00000469080 DDX19BQ9UMR2 479 aa15.29■□□□□ 0.04
USP11-206ENST00000469080 CCDC9Q9Y3X0 531 aaKnown RBP15.29■□□□□ 0.04
USP11-206ENST00000469080 NCBP3Q53F19 620 aaKnown RBP15.29■□□□□ 0.04
USP11-206ENST00000469080 GNAI1P63096 354 aa15.28■□□□□ 0.04
USP11-206ENST00000469080 SMARCA5O60264 1052 aaPredicted RBP15.28■□□□□ 0.04
USP11-206ENST00000469080 BRD2P25440 801 aaKnown RBP15.28■□□□□ 0.04
USP11-206ENST00000469080 MAP7D2Q96T17 732 aa15.28■□□□□ 0.04
USP11-206ENST00000469080 FKBP5Q13451 457 aaPredicted RBP15.27■□□□□ 0.04
USP11-206ENST00000469080 TTC21BQ7Z4L5 1316 aa15.27■□□□□ 0.04
USP11-206ENST00000469080 POLR1AO95602 1720 aaPredicted RBP15.27■□□□□ 0.03
USP11-206ENST00000469080 TMEM51Q9NW97 253 aa15.27■□□□□ 0.03
USP11-206ENST00000469080 ERBB4Q15303 1308 aa15.26■□□□□ 0.03
USP11-206ENST00000469080 C8orf34Q49A92 452 aa15.26■□□□□ 0.03
USP11-206ENST00000469080 TSHZ3Q63HK5 1081 aa15.26■□□□□ 0.03
USP11-206ENST00000469080 KAT6BQ8WYB5 2073 aa15.26■□□□□ 0.03
USP11-206ENST00000469080 DNTTIP2Q5QJE6 756 aaKnown RBP15.26■□□□□ 0.03
USP11-206ENST00000469080 LRRC59Q96AG4 307 aaKnown RBP15.26■□□□□ 0.03
USP11-206ENST00000469080 VWDEQ8N2E2 1590 aa15.25■□□□□ 0.03
USP11-206ENST00000469080 DEPDC5O75140 1603 aa15.25■□□□□ 0.03
USP11-206ENST00000469080 HSPA2P54652 639 aa15.25■□□□□ 0.03
USP11-206ENST00000469080 FOXD4L5Q5VV16 416 aaPredicted RBP15.25■□□□□ 0.03
USP11-206ENST00000469080 FOXD4L4Q8WXT5 416 aaPredicted RBP15.25■□□□□ 0.03
USP11-206ENST00000469080 MYOM2P54296 1465 aa15.25■□□□□ 0.03
USP11-206ENST00000469080 ROBO2Q9HCK4 1378 aa15.25■□□□□ 0.03
USP11-206ENST00000469080 AIMP1Q12904 312 aaKnown RBP15.25■□□□□ 0.03
USP11-206ENST00000469080 PROSER2Q86WR7 435 aaPredicted RBP15.25■□□□□ 0.03
USP11-206ENST00000469080 STK31Q9BXU1 1019 aa15.24■□□□□ 0.03
USP11-206ENST00000469080 SIGLEC1Q9BZZ2 1709 aa15.24■□□□□ 0.03
USP11-206ENST00000469080 CABLES1Q8TDN4 633 aa15.24■□□□□ 0.03
USP11-206ENST00000469080 ZNF692Q9BU19 519 aaPredicted RBP15.24■□□□□ 0.03
USP11-206ENST00000469080 TAOK2Q9UL54 1235 aa15.24■□□□□ 0.03
USP11-206ENST00000469080 SECISBP2LQ93073 1101 aaKnown RBP15.23■□□□□ 0.03
USP11-206ENST00000469080 PLEKHF1Q96S99 279 aa15.23■□□□□ 0.03
USP11-206ENST00000469080 R3HCC1Q9Y3T6 440 aaKnown RBP15.23■□□□□ 0.03
USP11-206ENST00000469080 BECN1Q14457 450 aa15.23■□□□□ 0.03
USP11-206ENST00000469080 ORAI2Q96SN7 254 aa15.23■□□□□ 0.03
USP11-206ENST00000469080 SYNMO15061 1565 aa15.23■□□□□ 0.03
USP11-206ENST00000469080 MAP3K19Q56UN5 1328 aa15.22■□□□□ 0.03
USP11-206ENST00000469080 IL13P35225 146 aa15.22■□□□□ 0.03
USP11-206ENST00000469080 TRMT2AQ8IZ69 625 aaKnown RBP15.22■□□□□ 0.03
USP11-206ENST00000469080 ABCC11Q96J66 1382 aa15.22■□□□□ 0.03
USP11-206ENST00000469080 C16orf71Q8IYS4 520 aaPredicted RBP15.22■□□□□ 0.03
USP11-206ENST00000469080 KDM2BQ8NHM5 1336 aa15.22■□□□□ 0.03
USP11-206ENST00000469080 KIF16BQ96L93 1317 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 OS9Q13438 667 aaPredicted RBP15.21■□□□□ 0.03
USP11-206ENST00000469080 FOXD4L6Q3SYB3 417 aaPredicted RBP15.21■□□□□ 0.03
USP11-206ENST00000469080 FOXD4L3Q6VB84 417 aaPredicted RBP15.21■□□□□ 0.03
USP11-206ENST00000469080 PIP4K2AP48426 406 aaPredicted RBP15.21■□□□□ 0.03
USP11-206ENST00000469080 LMOD3Q0VAK6 560 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 MTHFSDQ2M296 383 aaKnown RBP15.21■□□□□ 0.03
USP11-206ENST00000469080 MPRIPQ6WCQ1 1025 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 ANKLE2Q86XL3 938 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 NLRP2Q9NX02 1062 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 NPC1L1Q9UHC9 1359 aa15.21■□□□□ 0.03
USP11-206ENST00000469080 ADGRB3O60242 1522 aa15.21■□□□□ 0.02
USP11-206ENST00000469080 TULP4Q9NRJ4 1543 aa15.21■□□□□ 0.02
USP11-206ENST00000469080 VAMP4O75379 141 aa15.2■□□□□ 0.02
USP11-206ENST00000469080 DMTNQ08495 405 aa15.2■□□□□ 0.02
USP11-206ENST00000469080 TRIM6-TRIM34B2RNG4 842 aa15.19■□□□□ 0.02
USP11-206ENST00000469080 G2E3Q7L622 706 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms