RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 ANKRD36BQ8N2N9 1353 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 NRXN1Q9ULB1 1477 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 SASS6Q6UVJ0 657 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 MPNDQ8N594 471 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 TSC1Q92574 1164 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 THUMPD2Q9BTF0 503 aaKnown RBP12.68□□□□□ -0.38
CLIP4-208ENST00000456385 C14orf93Q9H972 538 aaKnown RBP12.68□□□□□ -0.38
CLIP4-208ENST00000456385 ZHX1Q9UKY1 873 aaPredicted RBP12.68□□□□□ -0.38
CLIP4-208ENST00000456385 QRICH2Q9H0J4 1663 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 ZFYVE16Q7Z3T8 1539 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 USP32Q8NFA0 1604 aa12.68□□□□□ -0.38
CLIP4-208ENST00000456385 SMAP1Q8IYB5 467 aaPredicted RBP12.67□□□□□ -0.38
CLIP4-208ENST00000456385 CCDC39Q9UFE4 941 aa12.67□□□□□ -0.38
CLIP4-208ENST00000456385 MROH2AA6NES4 1674 aa12.67□□□□□ -0.38
CLIP4-208ENST00000456385 DEPDC5O75140 1603 aa12.67□□□□□ -0.38
CLIP4-208ENST00000456385 MCM5P33992 734 aa12.67□□□□□ -0.38
CLIP4-208ENST00000456385 NUTM2DQ5VT03 806 aaPredicted RBP12.67□□□□□ -0.38
CLIP4-208ENST00000456385 MRPL50Q8N5N7 158 aaKnown RBP12.67□□□□□ -0.38
CLIP4-208ENST00000456385 OTUD7AQ8TE49 926 aaPredicted RBP12.67□□□□□ -0.38
CLIP4-208ENST00000456385 VAMP4O75379 141 aa12.66□□□□□ -0.38
CLIP4-208ENST00000456385 SENP3Q9H4L4 574 aaPredicted RBP12.66□□□□□ -0.38
CLIP4-208ENST00000456385 CWC22Q9HCG8 908 aaKnown RBP12.66□□□□□ -0.38
CLIP4-208ENST00000456385 NSD2O96028 1365 aa12.66□□□□□ -0.38
CLIP4-208ENST00000456385 NEURL4Q96JN8 1562 aa12.65□□□□□ -0.38
CLIP4-208ENST00000456385 COL3A1P02461 1466 aaPredicted RBP12.65□□□□□ -0.38
CLIP4-208ENST00000456385 TTC22Q5TAA0 569 aa12.65□□□□□ -0.38
CLIP4-208ENST00000456385 MTERF4Q7Z6M4 381 aaKnown RBP12.65□□□□□ -0.38
CLIP4-208ENST00000456385 EVC2Q86UK5 1308 aa12.65□□□□□ -0.38
CLIP4-208ENST00000456385 VWDEQ8N2E2 1590 aa12.65□□□□□ -0.38
CLIP4-208ENST00000456385 IFT172Q9UG01 1749 aa12.65□□□□□ -0.38
CLIP4-208ENST00000456385 BRPF1P55201 1214 aaPredicted RBP12.65□□□□□ -0.39
CLIP4-208ENST00000456385 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.65□□□□□ -0.39
CLIP4-208ENST00000456385 ZC3H13Q5T200 1668 aaKnown RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 INO80Q9ULG1 1556 aaPredicted RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 KIF1BO60333 1816 aa12.64□□□□□ -0.39
CLIP4-208ENST00000456385 A0A1W2PP64 1363 aa12.64□□□□□ -0.39
CLIP4-208ENST00000456385 DIAPH1O60610 1272 aaKnown RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 PLEKHG5O94827 1062 aa12.64□□□□□ -0.39
CLIP4-208ENST00000456385 PTMAP06454 111 aaKnown RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 ZNF830Q96NB3 372 aaPredicted RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 PPRC1Q5VV67 1664 aaKnown RBP12.64□□□□□ -0.39
CLIP4-208ENST00000456385 FBLN1P23142 703 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 ADGRB1O14514 1584 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 SETBP1Q9Y6X0 1596 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 APBB1O00213 710 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 FYB1O15117 783 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 ST18O60284 1047 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 SDSP20132 328 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 DNTTIP2Q5QJE6 756 aaKnown RBP12.63□□□□□ -0.39
CLIP4-208ENST00000456385 CCDC94Q9BW85 323 aaPredicted RBP12.63□□□□□ -0.39
CLIP4-208ENST00000456385 TULP4Q9NRJ4 1543 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 PIK3R4Q99570 1358 aa12.63□□□□□ -0.39
CLIP4-208ENST00000456385 A0A0U1RQG5 324 aaPredicted RBP12.62□□□□□ -0.39
CLIP4-208ENST00000456385 FAM177BA6PVY3 158 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 PRKAR2BP31323 418 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 INTS3Q68E01 1043 aaKnown RBP12.62□□□□□ -0.39
CLIP4-208ENST00000456385 ARHGAP45Q92619 1136 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 ABCC4O15439 1325 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 KIAA2012Q0VF49 1180 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 FOXD4L6Q3SYB3 417 aaPredicted RBP12.62□□□□□ -0.39
CLIP4-208ENST00000456385 FOXD4L3Q6VB84 417 aaPredicted RBP12.62□□□□□ -0.39
CLIP4-208ENST00000456385 PHACTR3Q96KR7 559 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 CHMP4BQ9H444 224 aaKnown RBP12.62□□□□□ -0.39
CLIP4-208ENST00000456385 ERCC6L2Q5T890 1561 aa12.62□□□□□ -0.39
CLIP4-208ENST00000456385 PTCH1Q13635 1447 aa12.61□□□□□ -0.39
CLIP4-208ENST00000456385 SMARCA5O60264 1052 aaPredicted RBP12.61□□□□□ -0.39
CLIP4-208ENST00000456385 ZSCAN20P17040 1043 aaPredicted RBP12.61□□□□□ -0.39
CLIP4-208ENST00000456385 ZNF710Q8N1W2 664 aa12.61□□□□□ -0.39
CLIP4-208ENST00000456385 C17orf53Q8N3J3 647 aaPredicted RBP12.61□□□□□ -0.39
CLIP4-208ENST00000456385 DCTPP1Q9H773 170 aa12.61□□□□□ -0.39
CLIP4-208ENST00000456385 MYRIPQ8NFW9 859 aa12.61□□□□□ -0.39
CLIP4-208ENST00000456385 HMOX1P09601 288 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 SRPK2P78362 688 aaKnown RBP12.6□□□□□ -0.39
CLIP4-208ENST00000456385 ZNF428Q96B54 188 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 MROH1Q8NDA8 1641 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 DMTNQ08495 405 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 TSPY26PQ9H489 355 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 MBIPQ9NS73 344 aa12.6□□□□□ -0.39
CLIP4-208ENST00000456385 CBX1P83916 185 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 C8orf58Q8NAV2 365 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 GDPD2Q9HCC8 539 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 ATP7AQ04656 1500 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 ADGRB3O60242 1522 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 FCHSD2O94868 740 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 NEK4P51957 841 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 TWISTNBQ3B726 338 aaPredicted RBP12.59□□□□□ -0.39
CLIP4-208ENST00000456385 EFCAB6Q5THR3 1501 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 TMX3Q96JJ7 454 aa12.59□□□□□ -0.39
CLIP4-208ENST00000456385 GADD45BO75293 160 aaPredicted RBP12.58□□□□□ -0.4
CLIP4-208ENST00000456385 MBD3O95983 291 aa12.58□□□□□ -0.4
CLIP4-208ENST00000456385 NOL8Q76FK4 1167 aaKnown RBP12.58□□□□□ -0.4
CLIP4-208ENST00000456385 TTC12Q9H892 705 aaPredicted RBP12.58□□□□□ -0.4
CLIP4-208ENST00000456385 STK26Q9P289 416 aa12.58□□□□□ -0.4
CLIP4-208ENST00000456385 PUS7Q96PZ0 661 aaKnown RBP12.57□□□□□ -0.4
CLIP4-208ENST00000456385 KNDC1Q76NI1 1749 aa12.57□□□□□ -0.4
CLIP4-208ENST00000456385 NOLC1Q14978 699 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLIP4-208ENST00000456385 TPRNQ4KMQ1 711 aa12.57□□□□□ -0.4
CLIP4-208ENST00000456385 CASC1Q6TDU7 716 aa12.57□□□□□ -0.4
CLIP4-208ENST00000456385 USP25Q9UHP3 1055 aa12.57□□□□□ -0.4
CLIP4-208ENST00000456385 REREQ9P2R6 1566 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms