RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 POLR3GLQ9BT43 218 aa27.66■■■□□ 2.02
COL9A3-202ENST00000452372 BAG6P46379 1132 aa27.65■■■□□ 2.02
COL9A3-202ENST00000452372 EN1Q05925 392 aaPredicted RBP27.64■■■□□ 2.02
COL9A3-202ENST00000452372 TCP11L2Q8N4U5 519 aa27.64■■■□□ 2.02
COL9A3-202ENST00000452372 RGPD1P0DJD0 1748 aa27.63■■■□□ 2.01
COL9A3-202ENST00000452372 COL5A2P05997 1499 aaPredicted RBP27.63■■■□□ 2.01
COL9A3-202ENST00000452372 COL18A1P39060 1754 aa27.63■■■□□ 2.01
COL9A3-202ENST00000452372 AATKQ6ZMQ8 1374 aa27.62■■■□□ 2.01
COL9A3-202ENST00000452372 FAM196AQ6ZSG2 479 aa27.62■■■□□ 2.01
COL9A3-202ENST00000452372 KCNH5Q8NCM2 988 aa27.62■■■□□ 2.01
COL9A3-202ENST00000452372 USP54Q70EL1 1684 aa27.62■■■□□ 2.01
COL9A3-202ENST00000452372 AXIN2Q9Y2T1 843 aa27.61■■■□□ 2.01
COL9A3-202ENST00000452372 TNS1Q9HBL0 1735 aaKnown RBP27.61■■■□□ 2.01
COL9A3-202ENST00000452372 CARD14Q9BXL6 1004 aa27.6■■■□□ 2.01
COL9A3-202ENST00000452372 THRAP3Q9Y2W1 955 aaKnown RBP27.6■■■□□ 2.01
COL9A3-202ENST00000452372 DISP2A7MBM2 1401 aa27.58■■■□□ 2.01
COL9A3-202ENST00000452372 TRIM37O94972 964 aa27.58■■■□□ 2.01
COL9A3-202ENST00000452372 ZBTB7CA1YPR0 619 aa27.57■■■□□ 2
COL9A3-202ENST00000452372 ARHGEF25Q86VW2 580 aa27.57■■■□□ 2
COL9A3-202ENST00000452372 OVOS2A0A0J9YW53 1432 aa27.57■■■□□ 2
COL9A3-202ENST00000452372 OVOS2Q6IE36 1432 aa27.57■■■□□ 2
COL9A3-202ENST00000452372 FYB1O15117 783 aa27.56■■■□□ 2
COL9A3-202ENST00000452372 PDE3BQ13370 1112 aa27.56■■■□□ 2
COL9A3-202ENST00000452372 CAMKK2Q96RR4 588 aa27.56■■■□□ 2
COL9A3-202ENST00000452372 KIF7Q2M1P5 1343 aa27.56■■■□□ 2
COL9A3-202ENST00000452372 CRB1P82279 1406 aa27.56■■■□□ 2
COL9A3-202ENST00000452372 EZH2Q15910 746 aaKnown RBP27.55■■■□□ 2
COL9A3-202ENST00000452372 PSDA5PKW4 1024 aaPredicted RBP27.54■■■□□ 2
COL9A3-202ENST00000452372 SOX12O15370 315 aa27.54■■■□□ 2
COL9A3-202ENST00000452372 COG3Q96JB2 828 aa27.54■■■□□ 2
COL9A3-202ENST00000452372 NFAT5O94916 1531 aa27.53■■■□□ 2
COL9A3-202ENST00000452372 NSD3Q9BZ95 1437 aa27.53■■■□□ 2
COL9A3-202ENST00000452372 RGPD5Q99666 1765 aa27.52■■■□□ 2
COL9A3-202ENST00000452372 PARP4Q9UKK3 1724 aaKnown RBP27.52■■■□□ 2
COL9A3-202ENST00000452372 PANK3Q9H999 370 aa27.51■■□□□ 1.99
COL9A3-202ENST00000452372 APBA3O96018 575 aa27.5■■□□□ 1.99
COL9A3-202ENST00000452372 GGNBP2Q9H3C7 697 aa27.5■■□□□ 1.99
COL9A3-202ENST00000452372 WDR17Q8IZU2 1322 aa27.48■■□□□ 1.99
COL9A3-202ENST00000452372 TOM1L2Q6ZVM7 507 aa27.48■■□□□ 1.99
COL9A3-202ENST00000452372 KIF20BQ96Q89 1820 aa27.48■■□□□ 1.99
COL9A3-202ENST00000452372 ZEB1P37275 1124 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-202ENST00000452372 CCDC7Q96M83 1385 aa27.47■■□□□ 1.99
COL9A3-202ENST00000452372 CGNL1Q0VF96 1302 aa27.46■■□□□ 1.99
COL9A3-202ENST00000452372 WASHC2AQ641Q2 1341 aa27.45■■□□□ 1.99
COL9A3-202ENST00000452372 PEAK1Q9H792 1746 aa27.44■■□□□ 1.98
COL9A3-202ENST00000452372 R3HDM1Q15032 1099 aaKnown RBP27.44■■□□□ 1.98
COL9A3-202ENST00000452372 LTN1O94822 1766 aa27.43■■□□□ 1.98
COL9A3-202ENST00000452372 ABCC6O95255 1503 aa27.42■■□□□ 1.98
COL9A3-202ENST00000452372 LRP5O75197 1615 aa27.42■■□□□ 1.98
COL9A3-202ENST00000452372 CARD10Q9BWT7 1032 aa27.42■■□□□ 1.98
COL9A3-202ENST00000452372 LRRC37A3O60309 1634 aa27.41■■□□□ 1.98
COL9A3-202ENST00000452372 PARD3Q8TEW0 1356 aa27.4■■□□□ 1.98
COL9A3-202ENST00000452372 SBF2Q86WG5 1849 aa27.4■■□□□ 1.98
COL9A3-202ENST00000452372 FBLN1P23142 703 aa27.4■■□□□ 1.98
COL9A3-202ENST00000452372 DDB1Q16531 1140 aa27.4■■□□□ 1.98
COL9A3-202ENST00000452372 MARCH10Q8NA82 808 aaPredicted RBP27.39■■□□□ 1.98
COL9A3-202ENST00000452372 PTF1AQ7RTS3 328 aa27.38■■□□□ 1.97
COL9A3-202ENST00000452372 WNK3Q9BYP7 1800 aa27.38■■□□□ 1.97
COL9A3-202ENST00000452372 RREB1Q92766 1687 aa27.37■■□□□ 1.97
COL9A3-202ENST00000452372 KNSTRNQ9Y448 316 aa27.37■■□□□ 1.97
COL9A3-202ENST00000452372 MAP3K19Q56UN5 1328 aa27.37■■□□□ 1.97
COL9A3-202ENST00000452372 OVOS2A0A0G2JMS6 1433 aa27.36■■□□□ 1.97
COL9A3-202ENST00000452372 IP6K1Q92551 441 aa27.36■■□□□ 1.97
COL9A3-202ENST00000452372 CDCA7Q9BWT1 371 aaPredicted RBP27.36■■□□□ 1.97
COL9A3-202ENST00000452372 CSB-PGBD3P0DP91 1061 aa27.35■■□□□ 1.97
COL9A3-202ENST00000452372 NUP188Q5SRE5 1749 aa27.34■■□□□ 1.97
COL9A3-202ENST00000452372 NSD2O96028 1365 aa27.34■■□□□ 1.97
COL9A3-202ENST00000452372 PER1O15534 1290 aaPredicted RBP27.33■■□□□ 1.97
COL9A3-202ENST00000452372 RRS1Q15050 365 aaKnown RBP27.33■■□□□ 1.97
COL9A3-202ENST00000452372 ANKRD26Q9UPS8 1709 aa27.33■■□□□ 1.96
COL9A3-202ENST00000452372 AMPHP49418 695 aa27.32■■□□□ 1.96
COL9A3-202ENST00000452372 BCL9O00512 1426 aa27.32■■□□□ 1.96
COL9A3-202ENST00000452372 PLSCR1O15162 318 aa27.31■■□□□ 1.96
COL9A3-202ENST00000452372 HOXC9P31274 260 aa27.3■■□□□ 1.96
COL9A3-202ENST00000452372 BCL11BQ9C0K0 894 aaPredicted RBP27.3■■□□□ 1.96
COL9A3-202ENST00000452372 ERBB3P21860 1342 aa27.3■■□□□ 1.96
COL9A3-202ENST00000452372 AMER1Q5JTC6 1135 aaPredicted RBP27.29■■□□□ 1.96
COL9A3-202ENST00000452372 ANKRD24Q8TF21 1146 aa27.29■■□□□ 1.96
COL9A3-202ENST00000452372 RTL1A6NKG5 1358 aa27.28■■□□□ 1.96
COL9A3-202ENST00000452372 EXOC5O00471 708 aa27.28■■□□□ 1.96
COL9A3-202ENST00000452372 PROM2Q8N271 834 aa27.28■■□□□ 1.96
COL9A3-202ENST00000452372 KIF24Q5T7B8 1368 aa27.27■■□□□ 1.96
COL9A3-202ENST00000452372 MAP2P11137 1827 aaKnown RBP27.25■■□□□ 1.95
COL9A3-202ENST00000452372 NBPF14Q5TI25 921 aa27.25■■□□□ 1.95
COL9A3-202ENST00000452372 NLRP2Q9NX02 1062 aa27.25■■□□□ 1.95
COL9A3-202ENST00000452372 MORC1Q86VD1 984 aa27.24■■□□□ 1.95
COL9A3-202ENST00000452372 EMILIN1Q9Y6C2 1016 aa27.24■■□□□ 1.95
COL9A3-202ENST00000452372 RGPD3A6NKT7 1758 aaPredicted RBP27.23■■□□□ 1.95
COL9A3-202ENST00000452372 RGPD4Q7Z3J3 1758 aa27.23■■□□□ 1.95
COL9A3-202ENST00000452372 TNNT2P45379 298 aaPredicted RBP27.23■■□□□ 1.95
COL9A3-202ENST00000452372 FLT4P35916 1363 aa27.22■■□□□ 1.95
COL9A3-202ENST00000452372 LTV1Q96GA3 475 aaPredicted RBP27.22■■□□□ 1.95
COL9A3-202ENST00000452372 POLKQ9UBT6 870 aa27.22■■□□□ 1.95
COL9A3-202ENST00000452372 INSRP06213 1382 aa27.22■■□□□ 1.95
COL9A3-202ENST00000452372 HSP90AB2PQ58FF8 381 aa27.21■■□□□ 1.95
COL9A3-202ENST00000452372 KCNQ2O43526 872 aa27.2■■□□□ 1.94
COL9A3-202ENST00000452372 TNS2Q63HR2 1409 aa27.2■■□□□ 1.94
COL9A3-202ENST00000452372 IL2RBP14784 551 aa27.19■■□□□ 1.94
COL9A3-202ENST00000452372 NPC1L1Q9UHC9 1359 aa27.19■■□□□ 1.94
COL9A3-202ENST00000452372 FAM208AQ9UK61 1670 aaKnown RBP27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 861 ms