RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 ZBTB7CA1YPR0 619 aa27.28■■□□□ 1.96
USP40-207ENST00000450940 RGPD1P0DJD0 1748 aa27.27■■□□□ 1.96
USP40-207ENST00000450940 ABCC6O95255 1503 aa27.27■■□□□ 1.96
USP40-207ENST00000450940 DEFB132Q7Z7B7 95 aa27.27■■□□□ 1.96
USP40-207ENST00000450940 NME9Q86XW9 330 aa27.27■■□□□ 1.96
USP40-207ENST00000450940 PARP4Q9UKK3 1724 aaKnown RBP27.27■■□□□ 1.96
USP40-207ENST00000450940 FAM182BQ5T319 152 aa27.26■■□□□ 1.95
USP40-207ENST00000450940 WDR17Q8IZU2 1322 aa27.24■■□□□ 1.95
USP40-207ENST00000450940 TMF1P82094 1093 aa27.24■■□□□ 1.95
USP40-207ENST00000450940 FAM196AQ6ZSG2 479 aa27.23■■□□□ 1.95
USP40-207ENST00000450940 SOX12O15370 315 aa27.22■■□□□ 1.95
USP40-207ENST00000450940 TNS1Q9HBL0 1735 aaKnown RBP27.21■■□□□ 1.95
USP40-207ENST00000450940 PDE3BQ13370 1112 aa27.21■■□□□ 1.95
USP40-207ENST00000450940 OVOS2A0A0J9YW53 1432 aa27.21■■□□□ 1.95
USP40-207ENST00000450940 OVOS2Q6IE36 1432 aa27.21■■□□□ 1.95
USP40-207ENST00000450940 LTN1O94822 1766 aa27.2■■□□□ 1.95
USP40-207ENST00000450940 TOM1L2Q6ZVM7 507 aa27.2■■□□□ 1.94
USP40-207ENST00000450940 WNK3Q9BYP7 1800 aa27.2■■□□□ 1.94
USP40-207ENST00000450940 DISP2A7MBM2 1401 aa27.19■■□□□ 1.94
USP40-207ENST00000450940 BAG6P46379 1132 aa27.19■■□□□ 1.94
USP40-207ENST00000450940 ANKRD36BQ8N2N9 1353 aa27.19■■□□□ 1.94
USP40-207ENST00000450940 CDCA8Q53HL2 280 aa27.17■■□□□ 1.94
USP40-207ENST00000450940 CARD10Q9BWT7 1032 aa27.17■■□□□ 1.94
USP40-207ENST00000450940 LRRC37A3O60309 1634 aa27.15■■□□□ 1.94
USP40-207ENST00000450940 CDCA7Q9BWT1 371 aaPredicted RBP27.14■■□□□ 1.94
USP40-207ENST00000450940 PEAK1Q9H792 1746 aa27.13■■□□□ 1.93
USP40-207ENST00000450940 C11orf95C9JLR9 678 aaPredicted RBP27.13■■□□□ 1.93
USP40-207ENST00000450940 CCER1Q8TC90 406 aaPredicted RBP27.13■■□□□ 1.93
USP40-207ENST00000450940 TRIM37O94972 964 aa27.12■■□□□ 1.93
USP40-207ENST00000450940 CSB-PGBD3P0DP91 1061 aa27.11■■□□□ 1.93
USP40-207ENST00000450940 ERBB3P21860 1342 aa27.11■■□□□ 1.93
USP40-207ENST00000450940 CCDC7Q96M83 1385 aa27.1■■□□□ 1.93
USP40-207ENST00000450940 EN1Q05925 392 aaPredicted RBP27.1■■□□□ 1.93
USP40-207ENST00000450940 DDB1Q16531 1140 aa27.1■■□□□ 1.93
USP40-207ENST00000450940 MYOM1P52179 1685 aa27.09■■□□□ 1.93
USP40-207ENST00000450940 COG3Q96JB2 828 aa27.09■■□□□ 1.93
USP40-207ENST00000450940 SBF2Q86WG5 1849 aa27.09■■□□□ 1.93
USP40-207ENST00000450940 CAMKK2Q96RR4 588 aa27.07■■□□□ 1.92
USP40-207ENST00000450940 OVOS2A0A0G2JMS6 1433 aa27.07■■□□□ 1.92
USP40-207ENST00000450940 FYB1O15117 783 aa27.06■■□□□ 1.92
USP40-207ENST00000450940 IP6K1Q92551 441 aa27.06■■□□□ 1.92
USP40-207ENST00000450940 PARD3Q8TEW0 1356 aa27.05■■□□□ 1.92
USP40-207ENST00000450940 BCL9O00512 1426 aa27.05■■□□□ 1.92
USP40-207ENST00000450940 APBA3O96018 575 aa27.04■■□□□ 1.92
USP40-207ENST00000450940 ANKRD24Q8TF21 1146 aa27.04■■□□□ 1.92
USP40-207ENST00000450940 EZH2Q15910 746 aaKnown RBP27.03■■□□□ 1.92
USP40-207ENST00000450940 MARCH10Q8NA82 808 aaPredicted RBP27.03■■□□□ 1.92
USP40-207ENST00000450940 KIF20BQ96Q89 1820 aa27.02■■□□□ 1.92
USP40-207ENST00000450940 FAM208AQ9UK61 1670 aaKnown RBP27.01■■□□□ 1.92
USP40-207ENST00000450940 SRCAPQ6ZRS2 3230 aa27.01■■□□□ 1.92
USP40-207ENST00000450940 MAP3K19Q56UN5 1328 aa27.01■■□□□ 1.91
USP40-207ENST00000450940 NLRP2Q9NX02 1062 aa27.01■■□□□ 1.91
USP40-207ENST00000450940 RREB1Q92766 1687 aa27.01■■□□□ 1.91
USP40-207ENST00000450940 EXOC5O00471 708 aa27■■□□□ 1.91
USP40-207ENST00000450940 CARD14Q9BXL6 1004 aa27■■□□□ 1.91
USP40-207ENST00000450940 FBLN1P23142 703 aa26.98■■□□□ 1.91
USP40-207ENST00000450940 EIF4G2P78344 907 aaKnown RBP eCLIP26.98■■□□□ 1.91
USP40-207ENST00000450940 GGNBP2Q9H3C7 697 aa26.98■■□□□ 1.91
USP40-207ENST00000450940 TNS2Q63HR2 1409 aa26.98■■□□□ 1.91
USP40-207ENST00000450940 HOXC9P31274 260 aa26.97■■□□□ 1.91
USP40-207ENST00000450940 RGPD3A6NKT7 1758 aaPredicted RBP26.97■■□□□ 1.91
USP40-207ENST00000450940 RGPD4Q7Z3J3 1758 aa26.97■■□□□ 1.91
USP40-207ENST00000450940 RTL1A6NKG5 1358 aa26.96■■□□□ 1.91
USP40-207ENST00000450940 IL2RBP14784 551 aa26.95■■□□□ 1.9
USP40-207ENST00000450940 BCL11BQ9C0K0 894 aaPredicted RBP26.95■■□□□ 1.9
USP40-207ENST00000450940 NUP188Q5SRE5 1749 aa26.94■■□□□ 1.9
USP40-207ENST00000450940 HSPA5P11021 654 aaKnown RBP26.94■■□□□ 1.9
USP40-207ENST00000450940 AMPHP49418 695 aa26.94■■□□□ 1.9
USP40-207ENST00000450940 PLSCR1O15162 318 aa26.93■■□□□ 1.9
USP40-207ENST00000450940 NSD3Q9BZ95 1437 aa26.92■■□□□ 1.9
USP40-207ENST00000450940 PSDA5PKW4 1024 aaPredicted RBP26.91■■□□□ 1.9
USP40-207ENST00000450940 RGPD2P0DJD1 1756 aa26.91■■□□□ 1.9
USP40-207ENST00000450940 RRS1Q15050 365 aaKnown RBP26.9■■□□□ 1.9
USP40-207ENST00000450940 PTF1AQ7RTS3 328 aa26.9■■□□□ 1.9
USP40-207ENST00000450940 LTV1Q96GA3 475 aaPredicted RBP26.9■■□□□ 1.9
USP40-207ENST00000450940 LRP5O75197 1615 aa26.9■■□□□ 1.9
USP40-207ENST00000450940 KIF24Q5T7B8 1368 aa26.89■■□□□ 1.9
USP40-207ENST00000450940 R3HDM1Q15032 1099 aaKnown RBP26.88■■□□□ 1.89
USP40-207ENST00000450940 NHSQ6T4R5 1651 aa26.85■■□□□ 1.89
USP40-207ENST00000450940 CGNL1Q0VF96 1302 aa26.85■■□□□ 1.89
USP40-207ENST00000450940 INSRP06213 1382 aa26.84■■□□□ 1.89
USP40-207ENST00000450940 ANKRD26Q9UPS8 1709 aa26.83■■□□□ 1.89
USP40-207ENST00000450940 NBPF14Q5TI25 921 aa26.83■■□□□ 1.89
USP40-207ENST00000450940 FLT4P35916 1363 aa26.83■■□□□ 1.88
USP40-207ENST00000450940 MAP2P11137 1827 aaKnown RBP26.81■■□□□ 1.88
USP40-207ENST00000450940 KCNQ2O43526 872 aa26.81■■□□□ 1.88
USP40-207ENST00000450940 HSP90AB2PQ58FF8 381 aa26.81■■□□□ 1.88
USP40-207ENST00000450940 NBPF6Q5VWK0 638 aa26.81■■□□□ 1.88
USP40-207ENST00000450940 PROM2Q8N271 834 aa26.81■■□□□ 1.88
USP40-207ENST00000450940 NBPF4Q96M43 638 aa26.81■■□□□ 1.88
USP40-207ENST00000450940 POLR3GLQ9BT43 218 aa26.8■■□□□ 1.88
USP40-207ENST00000450940 SMG6Q86US8 1419 aaKnown RBP26.79■■□□□ 1.88
USP40-207ENST00000450940 SHANK3Q9BYB0 1731 aa26.79■■□□□ 1.88
USP40-207ENST00000450940 EMILIN1Q9Y6C2 1016 aa26.78■■□□□ 1.88
USP40-207ENST00000450940 KAT6BQ8WYB5 2073 aa26.78■■□□□ 1.88
USP40-207ENST00000450940 MEGF6O75095 1541 aa26.77■■□□□ 1.88
USP40-207ENST00000450940 PANK3Q9H999 370 aa26.77■■□□□ 1.88
USP40-207ENST00000450940 BTAF1O14981 1849 aa26.76■■□□□ 1.87
USP40-207ENST00000450940 ZCRB1Q8TBF4 217 aaKnown RBP26.75■■□□□ 1.87
USP40-207ENST00000450940 ACSBG1Q96GR2 724 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms