RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 TERF2IPQ9NYB0 399 aa29.25■■■□□ 2.27
SDC1-205ENST00000447124 WDR17Q8IZU2 1322 aa29.24■■■□□ 2.27
SDC1-205ENST00000447124 SRCAPQ6ZRS2 3230 aa29.24■■■□□ 2.27
SDC1-205ENST00000447124 A0A1W2PP64 1363 aa29.24■■■□□ 2.27
SDC1-205ENST00000447124 NFAT5O94916 1531 aa29.23■■■□□ 2.27
SDC1-205ENST00000447124 SLC24A1O60721 1099 aa29.2■■■□□ 2.26
SDC1-205ENST00000447124 EDC4Q6P2E9 1401 aaKnown RBP29.2■■■□□ 2.26
SDC1-205ENST00000447124 TIMELESSQ9UNS1 1208 aa29.19■■■□□ 2.26
SDC1-205ENST00000447124 USP47Q96K76 1375 aa29.18■■■□□ 2.26
SDC1-205ENST00000447124 EZH2Q15910 746 aaKnown RBP29.18■■■□□ 2.26
SDC1-205ENST00000447124 CAMKK2Q96RR4 588 aa29.18■■■□□ 2.26
SDC1-205ENST00000447124 CARD10Q9BWT7 1032 aa29.18■■■□□ 2.26
SDC1-205ENST00000447124 APBA3O96018 575 aa29.17■■■□□ 2.26
SDC1-205ENST00000447124 CSB-PGBD3P0DP91 1061 aa29.17■■■□□ 2.26
SDC1-205ENST00000447124 DISP2A7MBM2 1401 aa29.17■■■□□ 2.26
SDC1-205ENST00000447124 RGPD5Q99666 1765 aa29.16■■■□□ 2.26
SDC1-205ENST00000447124 RGPD1P0DJD0 1748 aa29.16■■■□□ 2.26
SDC1-205ENST00000447124 CLSPNQ9HAW4 1339 aa29.15■■■□□ 2.26
SDC1-205ENST00000447124 TMF1P82094 1093 aa29.14■■■□□ 2.26
SDC1-205ENST00000447124 DDB1Q16531 1140 aa29.14■■■□□ 2.26
SDC1-205ENST00000447124 NINLQ9Y2I6 1382 aa29.13■■■□□ 2.25
SDC1-205ENST00000447124 PSDA5PKW4 1024 aaPredicted RBP29.13■■■□□ 2.25
SDC1-205ENST00000447124 TNS1Q9HBL0 1735 aaKnown RBP29.12■■■□□ 2.25
SDC1-205ENST00000447124 PARP4Q9UKK3 1724 aaKnown RBP29.12■■■□□ 2.25
SDC1-205ENST00000447124 USP54Q70EL1 1684 aa29.12■■■□□ 2.25
SDC1-205ENST00000447124 MARCH10Q8NA82 808 aaPredicted RBP29.1■■■□□ 2.25
SDC1-205ENST00000447124 CDCA7Q9BWT1 371 aaPredicted RBP29.1■■■□□ 2.25
SDC1-205ENST00000447124 OVOS2A0A0J9YW53 1432 aa29.1■■■□□ 2.25
SDC1-205ENST00000447124 OVOS2Q6IE36 1432 aa29.1■■■□□ 2.25
SDC1-205ENST00000447124 FBLN1P23142 703 aa29.08■■■□□ 2.25
SDC1-205ENST00000447124 ERBB3P21860 1342 aa29.07■■■□□ 2.24
SDC1-205ENST00000447124 ANKRD36BQ8N2N9 1353 aa29.06■■■□□ 2.24
SDC1-205ENST00000447124 PTF1AQ7RTS3 328 aa29.06■■■□□ 2.24
SDC1-205ENST00000447124 ABCC6O95255 1503 aa29.05■■■□□ 2.24
SDC1-205ENST00000447124 C11orf95C9JLR9 678 aaPredicted RBP29.05■■■□□ 2.24
SDC1-205ENST00000447124 ANKRD24Q8TF21 1146 aa29.05■■■□□ 2.24
SDC1-205ENST00000447124 NLRP2Q9NX02 1062 aa29.05■■■□□ 2.24
SDC1-205ENST00000447124 CCDC7Q96M83 1385 aa29.04■■■□□ 2.24
SDC1-205ENST00000447124 EXOC5O00471 708 aa29.04■■■□□ 2.24
SDC1-205ENST00000447124 R3HDM1Q15032 1099 aaKnown RBP29.04■■■□□ 2.24
SDC1-205ENST00000447124 IP6K1Q92551 441 aa29.04■■■□□ 2.24
SDC1-205ENST00000447124 COG3Q96JB2 828 aa29.04■■■□□ 2.24
SDC1-205ENST00000447124 OVOS2A0A0G2JMS6 1433 aa29.03■■■□□ 2.24
SDC1-205ENST00000447124 PEAK1Q9H792 1746 aa29.03■■■□□ 2.24
SDC1-205ENST00000447124 LRRC37A3O60309 1634 aa29.03■■■□□ 2.24
SDC1-205ENST00000447124 FYB1O15117 783 aa29.03■■■□□ 2.24
SDC1-205ENST00000447124 PARD3Q8TEW0 1356 aa29.01■■■□□ 2.23
SDC1-205ENST00000447124 CDCA8Q53HL2 280 aa29■■■□□ 2.23
SDC1-205ENST00000447124 MAP3K19Q56UN5 1328 aa28.99■■■□□ 2.23
SDC1-205ENST00000447124 LTN1O94822 1766 aa28.99■■■□□ 2.23
SDC1-205ENST00000447124 GGNBP2Q9H3C7 697 aa28.99■■■□□ 2.23
SDC1-205ENST00000447124 BCL11BQ9C0K0 894 aaPredicted RBP28.98■■■□□ 2.23
SDC1-205ENST00000447124 WNK3Q9BYP7 1800 aa28.97■■■□□ 2.23
SDC1-205ENST00000447124 LTV1Q96GA3 475 aaPredicted RBP28.97■■■□□ 2.23
SDC1-205ENST00000447124 CARD14Q9BXL6 1004 aa28.97■■■□□ 2.23
SDC1-205ENST00000447124 BCL9O00512 1426 aa28.96■■■□□ 2.23
SDC1-205ENST00000447124 CCER1Q8TC90 406 aaPredicted RBP28.96■■■□□ 2.23
SDC1-205ENST00000447124 PLSCR1O15162 318 aa28.95■■■□□ 2.22
SDC1-205ENST00000447124 IL2RBP14784 551 aa28.95■■■□□ 2.22
SDC1-205ENST00000447124 HOXC9P31274 260 aa28.95■■■□□ 2.22
SDC1-205ENST00000447124 SBF2Q86WG5 1849 aa28.94■■■□□ 2.22
SDC1-205ENST00000447124 AMPHP49418 695 aa28.93■■■□□ 2.22
SDC1-205ENST00000447124 RRS1Q15050 365 aaKnown RBP28.92■■■□□ 2.22
SDC1-205ENST00000447124 PROM2Q8N271 834 aa28.91■■■□□ 2.22
SDC1-205ENST00000447124 KCNQ2O43526 872 aa28.9■■■□□ 2.22
SDC1-205ENST00000447124 TNS2Q63HR2 1409 aa28.89■■■□□ 2.22
SDC1-205ENST00000447124 NBPF14Q5TI25 921 aa28.89■■■□□ 2.22
SDC1-205ENST00000447124 RREB1Q92766 1687 aa28.88■■■□□ 2.21
SDC1-205ENST00000447124 HSPA5P11021 654 aaKnown RBP28.85■■■□□ 2.21
SDC1-205ENST00000447124 ACSBG1Q96GR2 724 aa28.85■■■□□ 2.21
SDC1-205ENST00000447124 NUP188Q5SRE5 1749 aa28.85■■■□□ 2.21
SDC1-205ENST00000447124 LRP5O75197 1615 aa28.83■■■□□ 2.21
SDC1-205ENST00000447124 EIF4G2P78344 907 aaKnown RBP eCLIP28.82■■■□□ 2.2
SDC1-205ENST00000447124 NBPF6Q5VWK0 638 aa28.82■■■□□ 2.2
SDC1-205ENST00000447124 NBPF4Q96M43 638 aa28.82■■■□□ 2.2
SDC1-205ENST00000447124 NSD3Q9BZ95 1437 aa28.82■■■□□ 2.2
SDC1-205ENST00000447124 HSP90AB2PQ58FF8 381 aa28.81■■■□□ 2.2
SDC1-205ENST00000447124 POLR3GLQ9BT43 218 aa28.81■■■□□ 2.2
SDC1-205ENST00000447124 DDX54Q8TDD1 881 aaKnown RBP28.8■■■□□ 2.2
SDC1-205ENST00000447124 ANO8Q9HCE9 1232 aaPredicted RBP28.8■■■□□ 2.2
SDC1-205ENST00000447124 MYOM1P52179 1685 aa28.8■■■□□ 2.2
SDC1-205ENST00000447124 RTL1A6NKG5 1358 aa28.79■■■□□ 2.2
SDC1-205ENST00000447124 TXNRD1Q16881 649 aa28.79■■■□□ 2.2
SDC1-205ENST00000447124 USHBP1Q8N6Y0 703 aa28.76■■■□□ 2.19
SDC1-205ENST00000447124 EMILIN1Q9Y6C2 1016 aa28.75■■■□□ 2.19
SDC1-205ENST00000447124 RGPD3A6NKT7 1758 aaPredicted RBP28.75■■■□□ 2.19
SDC1-205ENST00000447124 RGPD2P0DJD1 1756 aa28.75■■■□□ 2.19
SDC1-205ENST00000447124 RGPD4Q7Z3J3 1758 aa28.75■■■□□ 2.19
SDC1-205ENST00000447124 KAT6BQ8WYB5 2073 aa28.74■■■□□ 2.19
SDC1-205ENST00000447124 INSRP06213 1382 aa28.74■■■□□ 2.19
SDC1-205ENST00000447124 ZCRB1Q8TBF4 217 aaKnown RBP28.73■■■□□ 2.19
SDC1-205ENST00000447124 FAM208AQ9UK61 1670 aaKnown RBP28.73■■■□□ 2.19
SDC1-205ENST00000447124 KIF20BQ96Q89 1820 aa28.72■■■□□ 2.19
SDC1-205ENST00000447124 MEGF6O75095 1541 aa28.71■■■□□ 2.19
SDC1-205ENST00000447124 PDGFDQ9GZP0 370 aaPredicted RBP28.71■■■□□ 2.19
SDC1-205ENST00000447124 FLT4P35916 1363 aa28.71■■■□□ 2.19
SDC1-205ENST00000447124 CGNL1Q0VF96 1302 aa28.7■■■□□ 2.19
SDC1-205ENST00000447124 KIF24Q5T7B8 1368 aa28.7■■■□□ 2.18
SDC1-205ENST00000447124 PANK3Q9H999 370 aa28.69■■■□□ 2.18
SDC1-205ENST00000447124 NHSQ6T4R5 1651 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms