RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 RIMS2Q9UQ26 1411 aa17■□□□□ 0.31
HERPUD1-204ENST00000439977 ZMYM3Q14202 1370 aa17■□□□□ 0.31
HERPUD1-204ENST00000439977 HSCBQ8IWL3 235 aa17■□□□□ 0.31
HERPUD1-204ENST00000439977 MCM4P33991 863 aa16.99■□□□□ 0.31
HERPUD1-204ENST00000439977 APBB1O00213 710 aa16.99■□□□□ 0.31
HERPUD1-204ENST00000439977 RBM42Q9BTD8 480 aaKnown RBP16.98■□□□□ 0.31
HERPUD1-204ENST00000439977 IFT57Q9NWB7 429 aa16.98■□□□□ 0.31
HERPUD1-204ENST00000439977 PLPPR3Q6T4P5 718 aa16.98■□□□□ 0.31
HERPUD1-204ENST00000439977 CCDC61Q9Y6R9 512 aa16.98■□□□□ 0.31
HERPUD1-204ENST00000439977 A2ML1A8K2U0 1454 aa16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 SULT6B1Q6IMI4 303 aa16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 ESF1Q9H501 851 aaKnown RBP16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 MCM10Q7L590 875 aa16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 CHMP5Q9NZZ3 219 aa16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 CFAP44Q96MT7 982 aa16.97■□□□□ 0.31
HERPUD1-204ENST00000439977 CD2BP2O95400 341 aaKnown RBP16.96■□□□□ 0.31
HERPUD1-204ENST00000439977 CALD1Q05682 793 aaKnown RBP16.96■□□□□ 0.31
HERPUD1-204ENST00000439977 ZNF853P0CG23 659 aa16.96■□□□□ 0.3
HERPUD1-204ENST00000439977 MIS18AQ9NYP9 233 aa16.96■□□□□ 0.3
HERPUD1-204ENST00000439977 C16orf71Q8IYS4 520 aaPredicted RBP16.95■□□□□ 0.3
HERPUD1-204ENST00000439977 TBC1D9Q6ZT07 1266 aa16.95■□□□□ 0.3
HERPUD1-204ENST00000439977 BMP2KLQ5H9B9 411 aa16.94■□□□□ 0.3
HERPUD1-204ENST00000439977 PRR36Q9H6K5 1346 aa16.94■□□□□ 0.3
HERPUD1-204ENST00000439977 HSP90AB1P08238 724 aaKnown RBP16.94■□□□□ 0.3
HERPUD1-204ENST00000439977 ZNF428Q96B54 188 aa16.94■□□□□ 0.3
HERPUD1-204ENST00000439977 GCC1Q96CN9 775 aa16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 TRAK2O60296 914 aa16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 HSP90AA1P07900 732 aaKnown RBP16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 HSP90AB2PQ58FF8 381 aa16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 EDC4Q6P2E9 1401 aaKnown RBP16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 RBM25P49756 843 aaKnown RBP16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 BRPF1P55201 1214 aaPredicted RBP16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 ARHGAP45Q92619 1136 aa16.93■□□□□ 0.3
HERPUD1-204ENST00000439977 CPSF1Q10570 1443 aaKnown RBP16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 ATP7BP35670 1465 aa16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 EIF4A2Q14240 407 aaKnown RBP16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 CPS1P31327 1500 aa16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 KIF2CQ99661 725 aa16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 PANK2Q9BZ23 570 aa16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 ABCC4O15439 1325 aa16.92■□□□□ 0.3
HERPUD1-204ENST00000439977 CLTCQ00610 1675 aaKnown RBP16.91■□□□□ 0.3
HERPUD1-204ENST00000439977 OTUD7AQ8TE49 926 aaPredicted RBP16.91■□□□□ 0.3
HERPUD1-204ENST00000439977 ZNF692Q9BU19 519 aaPredicted RBP16.91■□□□□ 0.3
HERPUD1-204ENST00000439977 MAP2P11137 1827 aaKnown RBP16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 LMOD3Q0VAK6 560 aa16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 TSPOAP1O95153 1857 aa16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 SMARCA5O60264 1052 aaPredicted RBP16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 XRCC6P12956 609 aaKnown RBP eCLIP16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 API5Q9BZZ5 524 aaKnown RBP16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 ANKRD26Q9UPS8 1709 aa16.9■□□□□ 0.3
HERPUD1-204ENST00000439977 GOLGA6L3A6NEY3 463 aa16.89■□□□□ 0.29
HERPUD1-204ENST00000439977 FOXO3O43524 673 aa16.89■□□□□ 0.29
HERPUD1-204ENST00000439977 GSPT1P15170 499 aaKnown RBP16.89■□□□□ 0.29
HERPUD1-204ENST00000439977 SLC26A8Q96RN1 970 aa16.89■□□□□ 0.29
HERPUD1-204ENST00000439977 KIF20BQ96Q89 1820 aa16.88■□□□□ 0.29
HERPUD1-204ENST00000439977 PTCH1Q13635 1447 aa16.88■□□□□ 0.29
HERPUD1-204ENST00000439977 TNPO1Q92973 898 aaKnown RBP16.88■□□□□ 0.29
HERPUD1-204ENST00000439977 CHMP4BQ9H444 224 aaKnown RBP16.88■□□□□ 0.29
HERPUD1-204ENST00000439977 ACEP12821 1306 aa16.87■□□□□ 0.29
HERPUD1-204ENST00000439977 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.87■□□□□ 0.29
HERPUD1-204ENST00000439977 SLC4A10Q6U841 1118 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 PLEKHM2Q8IWE5 1019 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 ROBO2Q9HCK4 1378 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 L1TD1Q5T7N2 865 aaKnown RBP16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 MEIS3Q99687 375 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 AATKQ6ZMQ8 1374 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 PIK3R4Q99570 1358 aa16.86■□□□□ 0.29
HERPUD1-204ENST00000439977 CDK12Q9NYV4 1490 aaPredicted RBP16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 TTC21BQ7Z4L5 1316 aa16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 CDC42BPGQ6DT37 1551 aa16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 F6X3S4 739 aa16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 SLC4A2P04920 1241 aa16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 SNX21Q969T3 373 aa16.85■□□□□ 0.29
HERPUD1-204ENST00000439977 EIF5BO60841 1220 aaKnown RBP16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 CEBPAP49715 358 aaPredicted RBP16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 CDC45O75419 566 aa16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 GAS2L2Q8NHY3 880 aa16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 NECTIN2Q92692 538 aa16.84■□□□□ 0.29
HERPUD1-204ENST00000439977 DDIT3P35638 169 aa16.83■□□□□ 0.29
HERPUD1-204ENST00000439977 DCTPP1Q9H773 170 aa16.83■□□□□ 0.29
HERPUD1-204ENST00000439977 RRAGDQ9NQL2 400 aaPredicted RBP16.83■□□□□ 0.28
HERPUD1-204ENST00000439977 DLC1Q96QB1 1528 aa16.83■□□□□ 0.28
HERPUD1-204ENST00000439977 CHL1O00533 1208 aa16.83■□□□□ 0.28
HERPUD1-204ENST00000439977 LTKP29376 864 aa16.83■□□□□ 0.28
HERPUD1-204ENST00000439977 G2E3Q7L622 706 aa16.83■□□□□ 0.28
HERPUD1-204ENST00000439977 K7ELQ4 463 aaPredicted RBP16.82■□□□□ 0.28
HERPUD1-204ENST00000439977 NUTM2GQ5VZR2 741 aa16.82■□□□□ 0.28
HERPUD1-204ENST00000439977 INTS3Q68E01 1043 aaKnown RBP16.81■□□□□ 0.28
HERPUD1-204ENST00000439977 CEP85Q6P2H3 762 aa16.81■□□□□ 0.28
HERPUD1-204ENST00000439977 FAM43AQ8N2R8 423 aa16.81■□□□□ 0.28
HERPUD1-204ENST00000439977 SSFA2P28290 1259 aa16.81■□□□□ 0.28
HERPUD1-204ENST00000439977 HDGFP51858 240 aaKnown RBP16.81■□□□□ 0.28
HERPUD1-204ENST00000439977 FSD2A1L4K1 749 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 TSHZ3Q63HK5 1081 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 RIMBP3CA6NJZ7 1639 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 RIMBP3BA6NNM3 1639 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 RIMBP3Q9UFD9 1639 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 MSH6P52701 1360 aa16.8■□□□□ 0.28
HERPUD1-204ENST00000439977 DDX11L8A8MPP1 907 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms