RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, human

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-216	ENST00000437340	C1orf167	Q5SNV9	1468 aa		33.21	■■■□□ 2.91
CPNE1-216	ENST00000437340	MST1R	Q04912	1400 aa		33.2	■■■□□ 2.9
CPNE1-216	ENST00000437340	CANX	P27824	592 aa	Known RBP	33.19	■■■□□ 2.9
CPNE1-216	ENST00000437340	ESCO1	Q5FWF5	840 aa		33.19	■■■□□ 2.9
CPNE1-216	ENST00000437340	PHACTR3	Q96KR7	559 aa		33.19	■■■□□ 2.9
CPNE1-216	ENST00000437340	MSH6	P52701	1360 aa		33.18	■■■□□ 2.9
CPNE1-216	ENST00000437340	CALD1	Q05682	793 aa	Known RBP	33.18	■■■□□ 2.9
CPNE1-216	ENST00000437340	KIF1A	Q12756	1690 aa		33.18	■■■□□ 2.9
CPNE1-216	ENST00000437340	ATF3	P18847	181 aa		33.17	■■■□□ 2.9
CPNE1-216	ENST00000437340	PIK3C2A	O00443	1686 aa		33.17	■■■□□ 2.9
CPNE1-216	ENST00000437340	TSR2	Q969E8	191 aa	Known RBP	33.16	■■■□□ 2.9
CPNE1-216	ENST00000437340	ORAI2	Q96SN7	254 aa		33.16	■■■□□ 2.9
CPNE1-216	ENST00000437340	KDM2B	Q8NHM5	1336 aa		33.16	■■■□□ 2.9
CPNE1-216	ENST00000437340	EIF4A2	Q14240	407 aa	Known RBP	33.16	■■■□□ 2.9
CPNE1-216	ENST00000437340	TCERG1	O14776	1098 aa	Known RBP	33.15	■■■□□ 2.9
CPNE1-216	ENST00000437340	CENPQ	Q7L2Z9	268 aa	Predicted RBP	33.15	■■■□□ 2.9
CPNE1-216	ENST00000437340	EXOSC9	Q06265	439 aa	Known RBP	33.14	■■■□□ 2.9
CPNE1-216	ENST00000437340	LMOD3	Q0VAK6	560 aa		33.14	■■■□□ 2.9
CPNE1-216	ENST00000437340	AAMP	Q13685	434 aa		33.14	■■■□□ 2.9
CPNE1-216	ENST00000437340	PEAK1	Q9H792	1746 aa		33.13	■■■□□ 2.89
CPNE1-216	ENST00000437340	USP54	Q70EL1	1684 aa		33.12	■■■□□ 2.89
CPNE1-216	ENST00000437340	CADPS2	Q86UW7	1296 aa		33.11	■■■□□ 2.89
CPNE1-216	ENST00000437340	FRAT1	Q92837	279 aa	Predicted RBP	33.11	■■■□□ 2.89
CPNE1-216	ENST00000437340	SBNO1	A3KN83	1393 aa		33.11	■■■□□ 2.89
CPNE1-216	ENST00000437340	MARF1	Q9Y4F3	1742 aa	Known RBP	33.1	■■■□□ 2.89
CPNE1-216	ENST00000437340	FLT4	P35916	1363 aa		33.09	■■■□□ 2.89
CPNE1-216	ENST00000437340	MAP3K19	Q56UN5	1328 aa		33.09	■■■□□ 2.89
CPNE1-216	ENST00000437340	RGPD1	P0DJD0	1748 aa		33.08	■■■□□ 2.89
CPNE1-216	ENST00000437340	MS4A1	P11836	297 aa		33.07	■■■□□ 2.88
CPNE1-216	ENST00000437340	HSP90AB2P	Q58FF8	381 aa		33.07	■■■□□ 2.88
CPNE1-216	ENST00000437340	KIF24	Q5T7B8	1368 aa		33.07	■■■□□ 2.88
CPNE1-216	ENST00000437340	PANK1	Q8TE04	598 aa		33.06	■■■□□ 2.88
CPNE1-216	ENST00000437340	ZNF428	Q96B54	188 aa		33.06	■■■□□ 2.88
CPNE1-216	ENST00000437340	IFT57	Q9NWB7	429 aa		33.06	■■■□□ 2.88
CPNE1-216	ENST00000437340	TRPM3	Q9HCF6	1732 aa	Predicted RBP	33.05	■■■□□ 2.88
CPNE1-216	ENST00000437340	NLRP6	P59044	892 aa		33.05	■■■□□ 2.88
CPNE1-216	ENST00000437340	ARHGEF10	O15013	1369 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	LTBP4	Q8N2S1	1624 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	GNAI1	P63096	354 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	ZKSCAN2	Q63HK3	967 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	SULT6B1	Q6IMI4	303 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	BCL2L13	Q9BXK5	485 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	COG6	Q9Y2V7	657 aa		33.04	■■■□□ 2.88
CPNE1-216	ENST00000437340	FOXO3	O43524	673 aa		33.03	■■■□□ 2.88
CPNE1-216	ENST00000437340	CLUAP1	Q96AJ1	413 aa		33.03	■■■□□ 2.88
CPNE1-216	ENST00000437340	PSME1	Q06323	249 aa		33.02	■■■□□ 2.88
CPNE1-216	ENST00000437340	ZNF853	P0CG23	659 aa		33.01	■■■□□ 2.88
CPNE1-216	ENST00000437340	SMC4	Q9NTJ3	1288 aa		33.01	■■■□□ 2.88
CPNE1-216	ENST00000437340	ALDH1L2	Q3SY69	923 aa		33.01	■■■□□ 2.87
CPNE1-216	ENST00000437340	PAK3	O75914	559 aa	Predicted RBP	33	■■■□□ 2.87
CPNE1-216	ENST00000437340	SSH1	Q8WYL5	1049 aa		33	■■■□□ 2.87
CPNE1-216	ENST00000437340	SOX12	O15370	315 aa		32.99	■■■□□ 2.87
CPNE1-216	ENST00000437340	AEBP1	Q8IUX7	1158 aa		32.99	■■■□□ 2.87
CPNE1-216	ENST00000437340	DLG5	Q8TDM6	1919 aa		32.99	■■■□□ 2.87
CPNE1-216	ENST00000437340	ABTB2	Q8N961	1025 aa		32.98	■■■□□ 2.87
CPNE1-216	ENST00000437340	AMPH	P49418	695 aa		32.98	■■■□□ 2.87
CPNE1-216	ENST00000437340	XPC	Q01831	940 aa	Predicted RBP	32.98	■■■□□ 2.87
CPNE1-216	ENST00000437340	RLBP1	P12271	317 aa		32.97	■■■□□ 2.87
CPNE1-216	ENST00000437340	CFAP44	Q96MT7	982 aa		32.97	■■■□□ 2.87
CPNE1-216	ENST00000437340	KDR	P35968	1356 aa		32.95	■■■□□ 2.87
CPNE1-216	ENST00000437340	KIF16B	Q96L93	1317 aa		32.95	■■■□□ 2.87
CPNE1-216	ENST00000437340	BRPF1	P55201	1214 aa	Predicted RBP	32.95	■■■□□ 2.87
CPNE1-216	ENST00000437340	DZIP1L	Q8IYY4	767 aa	Known RBP	32.94	■■■□□ 2.86
CPNE1-216	ENST00000437340	THUMPD2	Q9BTF0	503 aa	Known RBP	32.94	■■■□□ 2.86
CPNE1-216	ENST00000437340	LAS1L	Q9Y4W2	734 aa	Known RBP	32.94	■■■□□ 2.86
CPNE1-216	ENST00000437340	NUTM2G	Q5VZR2	741 aa		32.93	■■■□□ 2.86
CPNE1-216	ENST00000437340	MVP	Q14764	893 aa	Known RBP	32.93	■■■□□ 2.86
CPNE1-216	ENST00000437340	IGSF1	Q8N6C5	1336 aa		32.92	■■■□□ 2.86
CPNE1-216	ENST00000437340	ALS2	Q96Q42	1657 aa		32.92	■■■□□ 2.86
CPNE1-216	ENST00000437340	KRT28	Q7Z3Y7	464 aa		32.92	■■■□□ 2.86
CPNE1-216	ENST00000437340	FTSJ3	Q8IY81	847 aa	Known RBP	32.92	■■■□□ 2.86
CPNE1-216	ENST00000437340	IPO8	O15397	1037 aa	Known RBP	32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	ATF7IP	Q6VMQ6	1270 aa		32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	TNN	Q9UQP3	1299 aa		32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	DDX17	Q92841	729 aa	Known RBP	32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	MBIP	Q9NS73	344 aa		32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	SLAIN2	Q9P270	581 aa		32.91	■■■□□ 2.86
CPNE1-216	ENST00000437340	RTL1	A6NKG5	1358 aa		32.9	■■■□□ 2.86
CPNE1-216	ENST00000437340	HOXC9	P31274	260 aa		32.89	■■■□□ 2.86
CPNE1-216	ENST00000437340	BRINP3	Q76B58	766 aa		32.89	■■■□□ 2.86
CPNE1-216	ENST00000437340	TRIM27	P14373	513 aa		32.88	■■■□□ 2.85
CPNE1-216	ENST00000437340	VAMP4	O75379	141 aa		32.88	■■■□□ 2.85
CPNE1-216	ENST00000437340	PXDN	Q92626	1479 aa		32.87	■■■□□ 2.85
CPNE1-216	ENST00000437340	NOB1	Q9ULX3	412 aa	Known RBP	32.87	■■■□□ 2.85
CPNE1-216	ENST00000437340	FAM83G	A6ND36	823 aa		32.86	■■■□□ 2.85
CPNE1-216	ENST00000437340	EYA1	Q99502	592 aa		32.86	■■■□□ 2.85
CPNE1-216	ENST00000437340	NPHP3	Q7Z494	1330 aa		32.86	■■■□□ 2.85
CPNE1-216	ENST00000437340	IGHD	P01880	384 aa		32.84	■■■□□ 2.85
CPNE1-216	ENST00000437340	PDE4A	P27815	886 aa		32.84	■■■□□ 2.85
CPNE1-216	ENST00000437340	LTN1	O94822	1766 aa		32.83	■■■□□ 2.85
CPNE1-216	ENST00000437340	BACH2	Q9BYV9	841 aa		32.83	■■■□□ 2.85
CPNE1-216	ENST00000437340	KCNH5	Q8NCM2	988 aa		32.82	■■■□□ 2.84
CPNE1-216	ENST00000437340	DDX19B	Q9UMR2	479 aa		32.82	■■■□□ 2.84
CPNE1-216	ENST00000437340	NFAT5	O94916	1531 aa		32.81	■■■□□ 2.84
CPNE1-216	ENST00000437340	DCTN1	Q14203	1278 aa		32.81	■■■□□ 2.84
CPNE1-216	ENST00000437340	NHSL1	Q5SYE7	1610 aa		32.81	■■■□□ 2.84
CPNE1-216	ENST00000437340	ARHGAP45	Q92619	1136 aa		32.81	■■■□□ 2.84
CPNE1-216	ENST00000437340	GAS2L2	Q8NHY3	880 aa		32.8	■■■□□ 2.84
CPNE1-216	ENST00000437340	SLIT3	O75094	1523 aa		32.8	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 86 ms