RNA–Protein interactions for RNA: ENST00000436978.5

PTPN13-204, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 5 BASIC

Gene PTPN13, Length 8,573 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-204ENST00000436978 CCDC57Q2TAC2 916 aa18.93■□□□□ 0.62
PTPN13-204ENST00000436978 KCNH5Q8NCM2 988 aa18.93■□□□□ 0.62
PTPN13-204ENST00000436978 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.93■□□□□ 0.62
PTPN13-204ENST00000436978 RAPGEF6Q8TEU7 1601 aa18.93■□□□□ 0.62
PTPN13-204ENST00000436978 GRIN2AQ12879 1464 aa18.93■□□□□ 0.62
PTPN13-204ENST00000436978 BTBD11A6QL63 1104 aa18.93■□□□□ 0.62
PTPN13-204ENST00000436978 CD109Q6YHK3 1445 aa18.92■□□□□ 0.62
PTPN13-204ENST00000436978 JMYQ8N9B5 988 aa18.92■□□□□ 0.62
PTPN13-204ENST00000436978 ARGLU1Q9NWB6 273 aaPredicted RBP18.92■□□□□ 0.62
PTPN13-204ENST00000436978 MAGEC2Q9UBF1 373 aaPredicted RBP18.92■□□□□ 0.62
PTPN13-204ENST00000436978 CCP110O43303 1012 aa18.92■□□□□ 0.62
PTPN13-204ENST00000436978 ZNF428Q96B54 188 aa18.92■□□□□ 0.62
PTPN13-204ENST00000436978 SDF4Q9BRK5 362 aa18.92■□□□□ 0.62
PTPN13-204ENST00000436978 EXOSC9Q06265 439 aaKnown RBP18.91■□□□□ 0.62
PTPN13-204ENST00000436978 MPHOSPH8Q99549 860 aa18.91■□□□□ 0.62
PTPN13-204ENST00000436978 THOC2Q8NI27 1593 aaKnown RBP18.91■□□□□ 0.62
PTPN13-204ENST00000436978 OFD1O75665 1012 aa18.91■□□□□ 0.62
PTPN13-204ENST00000436978 DHX8Q14562 1220 aaKnown RBP18.91■□□□□ 0.62
PTPN13-204ENST00000436978 MBD3O95983 291 aa18.91■□□□□ 0.62
PTPN13-204ENST00000436978 NSD3Q9BZ95 1437 aa18.91■□□□□ 0.62
PTPN13-204ENST00000436978 SMARCE1Q969G3 411 aa18.9■□□□□ 0.62
PTPN13-204ENST00000436978 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.9■□□□□ 0.62
PTPN13-204ENST00000436978 AEBP1Q8IUX7 1158 aa18.9■□□□□ 0.62
PTPN13-204ENST00000436978 CCDC39Q9UFE4 941 aa18.9■□□□□ 0.62
PTPN13-204ENST00000436978 TRIM22Q8IYM9 498 aa18.9■□□□□ 0.62
PTPN13-204ENST00000436978 HSP90AA2PQ14568 343 aaPredicted RBP18.89■□□□□ 0.61
PTPN13-204ENST00000436978 FAM177BA6PVY3 158 aa18.89■□□□□ 0.61
PTPN13-204ENST00000436978 FILIP1LQ4L180 1135 aa18.89■□□□□ 0.61
PTPN13-204ENST00000436978 TMEM132AQ24JP5 1023 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 IFT57Q9NWB7 429 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 SLC12A5Q9H2X9 1139 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 PRDM11Q9NQV5 511 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 CCDC69A6NI79 296 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 DDX54Q8TDD1 881 aaKnown RBP18.88■□□□□ 0.61
PTPN13-204ENST00000436978 RRP12Q5JTH9 1297 aaKnown RBP18.88■□□□□ 0.61
PTPN13-204ENST00000436978 CDKL5O76039 1030 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.88■□□□□ 0.61
PTPN13-204ENST00000436978 CYP46A1Q9Y6A2 500 aa18.88■□□□□ 0.61
PTPN13-204ENST00000436978 NBPF1Q3BBV0 1214 aa18.87■□□□□ 0.61
PTPN13-204ENST00000436978 FCHSD2O94868 740 aa18.87■□□□□ 0.61
PTPN13-204ENST00000436978 GNAT3A8MTJ3 354 aa18.87■□□□□ 0.61
PTPN13-204ENST00000436978 BICRAQ9NZM4 1560 aa18.87■□□□□ 0.61
PTPN13-204ENST00000436978 HSP90AB2PQ58FF8 381 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 MYL6BP14649 208 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 ZNF652Q9Y2D9 606 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 MTMR7Q9Y216 660 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 STARD3NLO95772 234 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 MNS1Q8NEH6 495 aa18.86■□□□□ 0.61
PTPN13-204ENST00000436978 DACH1Q9UI36 760 aa18.85■□□□□ 0.61
PTPN13-204ENST00000436978 RAPGEF3O95398 923 aa18.85■□□□□ 0.61
PTPN13-204ENST00000436978 NUTM2BA6NNL0 878 aaPredicted RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 NUTM2EB1AL46 878 aaPredicted RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 STIM1Q13586 685 aa18.85■□□□□ 0.61
PTPN13-204ENST00000436978 SYCP1Q15431 976 aa18.85■□□□□ 0.61
PTPN13-204ENST00000436978 NUTM2AQ8IVF1 878 aaPredicted RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 ATF7IPQ6VMQ6 1270 aa18.85■□□□□ 0.61
PTPN13-204ENST00000436978 KRT18P05783 430 aaKnown RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 PDIA4P13667 645 aaKnown RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 EIF2AK4Q9P2K8 1649 aaKnown RBP18.85■□□□□ 0.61
PTPN13-204ENST00000436978 TXLNBQ8N3L3 684 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 PDILTQ8N807 584 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 LRPPRCP42704 1394 aaKnown RBP18.84■□□□□ 0.61
PTPN13-204ENST00000436978 PEG3Q9GZU2 1588 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 NASPP49321 788 aaPredicted RBP18.84■□□□□ 0.61
PTPN13-204ENST00000436978 NEK4P51957 841 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 CAGE1Q8TC20 777 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 CTNNA3Q9UI47 895 aa18.84■□□□□ 0.61
PTPN13-204ENST00000436978 MVPQ14764 893 aaKnown RBP18.83■□□□□ 0.61
PTPN13-204ENST00000436978 C1orf115Q9H7X2 142 aa18.83■□□□□ 0.6
PTPN13-204ENST00000436978 PDZRN3Q9UPQ7 1066 aa18.82■□□□□ 0.6
PTPN13-204ENST00000436978 IGHMBP2P38935 993 aaKnown RBP18.82■□□□□ 0.6
PTPN13-204ENST00000436978 TSR2Q969E8 191 aaKnown RBP18.82■□□□□ 0.6
PTPN13-204ENST00000436978 ZFYVE27Q5T4F4 411 aa18.82■□□□□ 0.6
PTPN13-204ENST00000436978 TSPY26PQ9H489 355 aa18.82■□□□□ 0.6
PTPN13-204ENST00000436978 STK38Q15208 465 aa18.81■□□□□ 0.6
PTPN13-204ENST00000436978 ERCC4Q92889 916 aaPredicted RBP18.81■□□□□ 0.6
PTPN13-204ENST00000436978 LUC7LQ9NQ29 371 aaKnown RBP18.81■□□□□ 0.6
PTPN13-204ENST00000436978 NUDT16Q96DE0 195 aaKnown RBP18.81■□□□□ 0.6
PTPN13-204ENST00000436978 CCDC61Q9Y6R9 512 aa18.81■□□□□ 0.6
PTPN13-204ENST00000436978 KRT32Q14532 448 aa18.81■□□□□ 0.6
PTPN13-204ENST00000436978 NFE2L2Q16236 605 aa18.81■□□□□ 0.6
PTPN13-204ENST00000436978 ATP2B2Q01814 1243 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 NOL7Q9UMY1 257 aaKnown RBP18.8■□□□□ 0.6
PTPN13-204ENST00000436978 HSP90B2PQ58FF3 399 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 AACSQ86V21 672 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 SIL1Q9H173 461 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 ZNF287Q9HBT7 754 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 MRE11P49959 708 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 RBM5P52756 815 aaKnown RBP eCLIP18.8■□□□□ 0.6
PTPN13-204ENST00000436978 AKNAQ7Z591 1439 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 SOGA3Q5TF21 947 aa18.8■□□□□ 0.6
PTPN13-204ENST00000436978 AMOTQ4VCS5 1084 aa18.79■□□□□ 0.6
PTPN13-204ENST00000436978 NAIPQ13075 1403 aa18.79■□□□□ 0.6
PTPN13-204ENST00000436978 SMC2O95347 1197 aa18.79■□□□□ 0.6
PTPN13-204ENST00000436978 PPP1R1BQ9UD71 204 aaPredicted RBP18.79■□□□□ 0.6
PTPN13-204ENST00000436978 WASF1Q92558 559 aa18.79■□□□□ 0.6
PTPN13-204ENST00000436978 WDR33Q9C0J8 1336 aaKnown RBP18.79■□□□□ 0.6
PTPN13-204ENST00000436978 RRS1Q15050 365 aaKnown RBP18.79■□□□□ 0.6
PTPN13-204ENST00000436978 FANCAO15360 1455 aa18.78■□□□□ 0.6
PTPN13-204ENST00000436978 ABCC11Q96J66 1382 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms