RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 ARHGEF25Q86VW2 580 aa12.76□□□□□ -0.37
SMC1A-203ENST00000428014 SLC12A5Q9H2X9 1139 aa12.76□□□□□ -0.37
SMC1A-203ENST00000428014 OVOS2A0A0J9YW53 1432 aa12.76□□□□□ -0.37
SMC1A-203ENST00000428014 OVOS2Q6IE36 1432 aa12.76□□□□□ -0.37
SMC1A-203ENST00000428014 NFAT5O94916 1531 aa12.75□□□□□ -0.37
SMC1A-203ENST00000428014 CAMTA1Q9Y6Y1 1673 aa12.74□□□□□ -0.37
SMC1A-203ENST00000428014 KIF24Q5T7B8 1368 aa12.74□□□□□ -0.37
SMC1A-203ENST00000428014 SPATA31A1Q5TZJ5 1347 aa12.74□□□□□ -0.37
SMC1A-203ENST00000428014 COL18A1P39060 1754 aa12.74□□□□□ -0.37
SMC1A-203ENST00000428014 THSD7AQ9UPZ6 1657 aa12.73□□□□□ -0.37
SMC1A-203ENST00000428014 COL5A2P05997 1499 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-203ENST00000428014 ABCB7O75027 752 aa12.73□□□□□ -0.37
SMC1A-203ENST00000428014 POLA2Q14181 598 aa12.73□□□□□ -0.37
SMC1A-203ENST00000428014 TMC1Q8TDI8 760 aa12.73□□□□□ -0.37
SMC1A-203ENST00000428014 CDCA7Q9BWT1 371 aaPredicted RBP12.73□□□□□ -0.37
SMC1A-203ENST00000428014 UPF1Q92900 1129 aaKnown RBP eCLIP12.72□□□□□ -0.37
SMC1A-203ENST00000428014 BLMP54132 1417 aaPredicted RBP12.71□□□□□ -0.37
SMC1A-203ENST00000428014 CRB1P82279 1406 aa12.71□□□□□ -0.37
SMC1A-203ENST00000428014 DSG3P32926 999 aa12.71□□□□□ -0.37
SMC1A-203ENST00000428014 ZC3H6P61129 1189 aaKnown RBP12.71□□□□□ -0.37
SMC1A-203ENST00000428014 WDR17Q8IZU2 1322 aa12.7□□□□□ -0.38
SMC1A-203ENST00000428014 BCL9O00512 1426 aa12.7□□□□□ -0.38
SMC1A-203ENST00000428014 RTL1A6NKG5 1358 aa12.69□□□□□ -0.38
SMC1A-203ENST00000428014 SEPT12Q8IYM1 358 aa12.69□□□□□ -0.38
SMC1A-203ENST00000428014 TCP11L2Q8N4U5 519 aa12.69□□□□□ -0.38
SMC1A-203ENST00000428014 MYOM1P52179 1685 aa12.69□□□□□ -0.38
SMC1A-203ENST00000428014 CCDC7Q96M83 1385 aa12.69□□□□□ -0.38
SMC1A-203ENST00000428014 EVA1CP58658 441 aa12.68□□□□□ -0.38
SMC1A-203ENST00000428014 NUTM2GQ5VZR2 741 aa12.68□□□□□ -0.38
SMC1A-203ENST00000428014 KRT27Q7Z3Y8 459 aa12.68□□□□□ -0.38
SMC1A-203ENST00000428014 COG3Q96JB2 828 aa12.68□□□□□ -0.38
SMC1A-203ENST00000428014 NSD2O96028 1365 aa12.68□□□□□ -0.38
SMC1A-203ENST00000428014 FYB1O15117 783 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 CHRNA2Q15822 529 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 NME9Q86XW9 330 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 CARD10Q9BWT7 1032 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 PARP4Q9UKK3 1724 aaKnown RBP12.67□□□□□ -0.38
SMC1A-203ENST00000428014 PLEKHG2Q9H7P9 1386 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 FAM208AQ9UK61 1670 aaKnown RBP12.67□□□□□ -0.38
SMC1A-203ENST00000428014 EP400Q96L91 3159 aa12.67□□□□□ -0.38
SMC1A-203ENST00000428014 DISP2A7MBM2 1401 aa12.66□□□□□ -0.38
SMC1A-203ENST00000428014 HSPA5P11021 654 aaKnown RBP12.66□□□□□ -0.38
SMC1A-203ENST00000428014 ERBB3P21860 1342 aa12.65□□□□□ -0.38
SMC1A-203ENST00000428014 CGNL1Q0VF96 1302 aa12.65□□□□□ -0.38
SMC1A-203ENST00000428014 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.65□□□□□ -0.38
SMC1A-203ENST00000428014 IP6K1Q92551 441 aa12.65□□□□□ -0.38
SMC1A-203ENST00000428014 CCDC9Q9Y3X0 531 aaKnown RBP12.65□□□□□ -0.38
SMC1A-203ENST00000428014 BRWD3Q6RI45 1802 aa12.65□□□□□ -0.39
SMC1A-203ENST00000428014 FAM98CQ17RN3 349 aaKnown RBP12.64□□□□□ -0.39
SMC1A-203ENST00000428014 LARP1Q6PKG0 1096 aaKnown RBP12.64□□□□□ -0.39
SMC1A-203ENST00000428014 FAM196AQ6ZSG2 479 aa12.63□□□□□ -0.39
SMC1A-203ENST00000428014 AXIN2Q9Y2T1 843 aa12.63□□□□□ -0.39
SMC1A-203ENST00000428014 LTN1O94822 1766 aa12.63□□□□□ -0.39
SMC1A-203ENST00000428014 KIF20BQ96Q89 1820 aa12.62□□□□□ -0.39
SMC1A-203ENST00000428014 PARD3Q8TEW0 1356 aa12.62□□□□□ -0.39
SMC1A-203ENST00000428014 CARD14Q9BXL6 1004 aa12.62□□□□□ -0.39
SMC1A-203ENST00000428014 STRN4Q9NRL3 753 aa12.62□□□□□ -0.39
SMC1A-203ENST00000428014 NSD3Q9BZ95 1437 aa12.62□□□□□ -0.39
SMC1A-203ENST00000428014 NPC1L1Q9UHC9 1359 aa12.61□□□□□ -0.39
SMC1A-203ENST00000428014 TOM1L2Q6ZVM7 507 aa12.61□□□□□ -0.39
SMC1A-203ENST00000428014 WNK3Q9BYP7 1800 aa12.6□□□□□ -0.39
SMC1A-203ENST00000428014 ANKRD26Q9UPS8 1709 aa12.6□□□□□ -0.39
SMC1A-203ENST00000428014 INSRP06213 1382 aa12.6□□□□□ -0.39
SMC1A-203ENST00000428014 FLT4P35916 1363 aa12.6□□□□□ -0.39
SMC1A-203ENST00000428014 MAP3K19Q56UN5 1328 aa12.6□□□□□ -0.39
SMC1A-203ENST00000428014 RGPD1P0DJD0 1748 aa12.59□□□□□ -0.39
SMC1A-203ENST00000428014 OVOS2A0A0G2JMS6 1433 aa12.59□□□□□ -0.39
SMC1A-203ENST00000428014 PLEKHG5O94827 1062 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 HOXC9P31274 260 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 PDE3BQ13370 1112 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 SF3B2Q13435 895 aaKnown RBP12.58□□□□□ -0.4
SMC1A-203ENST00000428014 NCAPD2Q15021 1401 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 ZRANB1Q9UGI0 708 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 RGPD5Q99666 1765 aa12.58□□□□□ -0.4
SMC1A-203ENST00000428014 PEAK1Q9H792 1746 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 TNS2Q63HR2 1409 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 SMG6Q86US8 1419 aaKnown RBP12.57□□□□□ -0.4
SMC1A-203ENST00000428014 DDB1Q16531 1140 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 LRRC37A3O60309 1634 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 KIF7Q2M1P5 1343 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 WASHC2AQ641Q2 1341 aa12.57□□□□□ -0.4
SMC1A-203ENST00000428014 RGPD3A6NKT7 1758 aaPredicted RBP12.56□□□□□ -0.4
SMC1A-203ENST00000428014 RGPD4Q7Z3J3 1758 aa12.56□□□□□ -0.4
SMC1A-203ENST00000428014 ANKRD24Q8TF21 1146 aa12.56□□□□□ -0.4
SMC1A-203ENST00000428014 GGNBP2Q9H3C7 697 aa12.56□□□□□ -0.4
SMC1A-203ENST00000428014 CSB-PGBD3P0DP91 1061 aa12.55□□□□□ -0.4
SMC1A-203ENST00000428014 IL2RBP14784 551 aa12.55□□□□□ -0.4
SMC1A-203ENST00000428014 BAG6P46379 1132 aa12.55□□□□□ -0.4
SMC1A-203ENST00000428014 AMPHP49418 695 aa12.55□□□□□ -0.4
SMC1A-203ENST00000428014 PANK3Q9H999 370 aa12.55□□□□□ -0.4
SMC1A-203ENST00000428014 A0A0G2JS52 829 aa12.54□□□□□ -0.4
SMC1A-203ENST00000428014 EXOC5O00471 708 aa12.54□□□□□ -0.4
SMC1A-203ENST00000428014 PER1O15534 1290 aaPredicted RBP12.54□□□□□ -0.4
SMC1A-203ENST00000428014 MYT1Q01538 1121 aa12.54□□□□□ -0.4
SMC1A-203ENST00000428014 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
SMC1A-203ENST00000428014 KNSTRNQ9Y448 316 aa12.54□□□□□ -0.4
SMC1A-203ENST00000428014 PLSCR1O15162 318 aa12.53□□□□□ -0.4
SMC1A-203ENST00000428014 HMGB2P26583 209 aaKnown RBP12.53□□□□□ -0.4
SMC1A-203ENST00000428014 USP35Q9P2H5 1018 aa12.53□□□□□ -0.4
SMC1A-203ENST00000428014 TNS1Q9HBL0 1735 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms