RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 PNMA1Q8ND90 353 aa5.16□□□□□ -1.58
PTPRC-208ENST00000427110 PURBQ96QR8 312 aaKnown RBP5.16□□□□□ -1.58
PTPRC-208ENST00000427110 KCTD15Q96SI1 283 aaPredicted RBP5.16□□□□□ -1.58
PTPRC-208ENST00000427110 MAP4K5Q9Y4K4 846 aa5.16□□□□□ -1.58
PTPRC-208ENST00000427110 SOBPA7XYQ1 873 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 CBLBQ13191 982 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 INTS6LQ5JSJ4 861 aaKnown RBP5.15□□□□□ -1.59
PTPRC-208ENST00000427110 PPP1R26Q5T8A7 1209 aaPredicted RBP5.15□□□□□ -1.59
PTPRC-208ENST00000427110 DZIP3Q86Y13 1208 aaKnown RBP5.15□□□□□ -1.59
PTPRC-208ENST00000427110 BANK1Q8NDB2 785 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 TRIM47Q96LD4 638 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 ZFP42Q96MM3 310 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 TBC1D2BQ9UPU7 963 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 PCDHB9Q9Y5E1 797 aa5.15□□□□□ -1.59
PTPRC-208ENST00000427110 ZBBXA8MT70 800 aa5.14□□□□□ -1.59
PTPRC-208ENST00000427110 MRPL14Q6P1L8 145 aaKnown RBP5.14□□□□□ -1.59
PTPRC-208ENST00000427110 TMPRSS4Q9NRS4 437 aa5.14□□□□□ -1.59
PTPRC-208ENST00000427110 GPSM3Q9Y4H4 160 aa5.14□□□□□ -1.59
PTPRC-208ENST00000427110 NDUFB9Q9Y6M9 179 aa5.14□□□□□ -1.59
PTPRC-208ENST00000427110 TMEM132AQ24JP5 1023 aa5.13□□□□□ -1.59
PTPRC-208ENST00000427110 MEIOBQ8N635 442 aa5.13□□□□□ -1.59
PTPRC-208ENST00000427110 SENP2Q9HC62 589 aa5.13□□□□□ -1.59
PTPRC-208ENST00000427110 ERVH48-1M5A8F1 160 aa5.12□□□□□ -1.59
PTPRC-208ENST00000427110 SCARF1Q14162 830 aa5.12□□□□□ -1.59
PTPRC-208ENST00000427110 LINC00528Q8N1L1 170 aa5.12□□□□□ -1.59
PTPRC-208ENST00000427110 AGBL1Q96MI9 1066 aa5.12□□□□□ -1.59
PTPRC-208ENST00000427110 EMILIN1Q9Y6C2 1016 aa5.12□□□□□ -1.59
PTPRC-208ENST00000427110 GIGYF1O75420 1035 aaPredicted RBP5.11□□□□□ -1.59
PTPRC-208ENST00000427110 BMP2P12643 396 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 VEGFBP49765 207 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 NR1H3Q13133 447 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 MCM6Q14566 821 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 NBPF20Q3BBV1 942 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 ZNF784Q8NCA9 323 aaPredicted RBP5.11□□□□□ -1.59
PTPRC-208ENST00000427110 KIFC2Q96AC6 838 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 GDPD2Q9HCC8 539 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 CYLDQ9NQC7 956 aa5.11□□□□□ -1.59
PTPRC-208ENST00000427110 CDV3Q9UKY7 258 aaKnown RBP5.11□□□□□ -1.59
PTPRC-208ENST00000427110 ABL2P42684 1182 aa5.1□□□□□ -1.59
PTPRC-208ENST00000427110 RELBQ01201 579 aa5.1□□□□□ -1.59
PTPRC-208ENST00000427110 IRF5Q13568 498 aa5.1□□□□□ -1.59
PTPRC-208ENST00000427110 PGPEP1Q9NXJ5 209 aa5.1□□□□□ -1.59
PTPRC-208ENST00000427110 ESPNB1AK53 854 aa5.09□□□□□ -1.59
PTPRC-208ENST00000427110 UPP2O95045 317 aa5.09□□□□□ -1.59
PTPRC-208ENST00000427110 ADD1P35611 737 aaKnown RBP5.09□□□□□ -1.59
PTPRC-208ENST00000427110 VAC14Q08AM6 782 aa5.09□□□□□ -1.59
PTPRC-208ENST00000427110 LCE2CQ5TA81 110 aa5.09□□□□□ -1.59
PTPRC-208ENST00000427110 APBB1O00213 710 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 SOCS7O14512 581 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 MAN1A2O60476 641 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 LILRA1O75019 489 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 DHX9Q08211 1270 aaKnown RBP5.08□□□□□ -1.6
PTPRC-208ENST00000427110 Q6ZVU0 165 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 ZNF395Q9H8N7 513 aaPredicted RBP5.08□□□□□ -1.6
PTPRC-208ENST00000427110 DNMT3LQ9UJW3 386 aa5.08□□□□□ -1.6
PTPRC-208ENST00000427110 FIGNL2A6NMB9 653 aa5.07□□□□□ -1.6
PTPRC-208ENST00000427110 NFX1Q12986 1120 aaKnown RBP5.07□□□□□ -1.6
PTPRC-208ENST00000427110 TREML4Q6UXN2 200 aa5.07□□□□□ -1.6
PTPRC-208ENST00000427110 POM121Q96HA1 1249 aa5.07□□□□□ -1.6
PTPRC-208ENST00000427110 INSM2Q96T92 566 aaPredicted RBP5.07□□□□□ -1.6
PTPRC-208ENST00000427110 TSEN34Q9BSV6 310 aaKnown RBP5.07□□□□□ -1.6
PTPRC-208ENST00000427110 GTF3C3Q9Y5Q9 886 aa5.07□□□□□ -1.6
PTPRC-208ENST00000427110 SOS2Q07890 1332 aaPredicted RBP5.06□□□□□ -1.6
PTPRC-208ENST00000427110 TTLL8A6PVC2 850 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 TERTO14746 1132 aaKnown RBP5.06□□□□□ -1.6
PTPRC-208ENST00000427110 WFS1O76024 890 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 ADH1AP07327 375 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 CTSOP43234 321 aaPredicted RBP5.06□□□□□ -1.6
PTPRC-208ENST00000427110 SCTRP47872 440 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 LCE2AQ5TA79 106 aaPredicted RBP5.06□□□□□ -1.6
PTPRC-208ENST00000427110 KDF1Q8NAX2 398 aaPredicted RBP5.06□□□□□ -1.6
PTPRC-208ENST00000427110 COG6Q9Y2V7 657 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 PCDHB11Q9Y5F2 797 aa5.06□□□□□ -1.6
PTPRC-208ENST00000427110 SPINT1O43278 529 aa5.05□□□□□ -1.6
PTPRC-208ENST00000427110 TSGA10IPQ3SY00 556 aa5.05□□□□□ -1.6
PTPRC-208ENST00000427110 CCDC85AQ96PX6 553 aaPredicted RBP5.05□□□□□ -1.6
PTPRC-208ENST00000427110 CDCA7Q9BWT1 371 aaPredicted RBP5.05□□□□□ -1.6
PTPRC-208ENST00000427110 SEPT12Q8IYM1 358 aa5.04□□□□□ -1.6
PTPRC-208ENST00000427110 PRM3Q9NNZ6 103 aa5.04□□□□□ -1.6
PTPRC-208ENST00000427110 POLMQ9NP87 494 aaPredicted RBP5.04□□□□□ -1.6
PTPRC-208ENST00000427110 CEP126Q9P2H0 1117 aa5.04□□□□□ -1.6
PTPRC-208ENST00000427110 NXF1Q9UBU9 619 aaKnown RBP5.04□□□□□ -1.6
PTPRC-208ENST00000427110 ZNF330Q9Y3S2 320 aaPredicted RBP5.04□□□□□ -1.6
PTPRC-208ENST00000427110 ERBB4Q15303 1308 aa5.03□□□□□ -1.6
PTPRC-208ENST00000427110 PTGIRP43119 386 aa5.03□□□□□ -1.6
PTPRC-208ENST00000427110 FOXD4L5Q5VV16 416 aaPredicted RBP5.03□□□□□ -1.6
PTPRC-208ENST00000427110 RAB6BQ9NRW1 208 aa5.03□□□□□ -1.6
PTPRC-208ENST00000427110 MEN1O00255 615 aa5.02□□□□□ -1.61
PTPRC-208ENST00000427110 STAU1O95793 577 aaKnown RBP5.02□□□□□ -1.61
PTPRC-208ENST00000427110 ERVK-9P63128 1117 aa5.02□□□□□ -1.61
PTPRC-208ENST00000427110 EIF4G2P78344 907 aaKnown RBP eCLIP5.02□□□□□ -1.61
PTPRC-208ENST00000427110 RNF20Q5VTR2 975 aa5.02□□□□□ -1.61
PTPRC-208ENST00000427110 CC2D2BQ6DHV5 1058 aa5.02□□□□□ -1.61
PTPRC-208ENST00000427110 RNF217Q8TC41 542 aa5.02□□□□□ -1.61
PTPRC-208ENST00000427110 POM121CA8CG34 1229 aa5.01□□□□□ -1.61
PTPRC-208ENST00000427110 ATP5J2-PTCD1G3V325 749 aa5.01□□□□□ -1.61
PTPRC-208ENST00000427110 H3BM21 787 aa5.01□□□□□ -1.61
PTPRC-208ENST00000427110 PIK3CDO00329 1044 aa5.01□□□□□ -1.61
PTPRC-208ENST00000427110 PPFIA3O75145 1194 aa5.01□□□□□ -1.61
PTPRC-208ENST00000427110 UBTFP17480 764 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms