RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 AEBP2Q6ZN18 517 aaPredicted RBP14.27□□□□□ -0.13
PTPRC-208ENST00000427110 CHIC1Q5VXU3 224 aa13.73□□□□□ -0.21
PTPRC-208ENST00000427110 PHF23Q9BUL5 403 aaPredicted RBP12.11□□□□□ -0.47
PTPRC-208ENST00000427110 SENP3Q9H4L4 574 aaPredicted RBP12.05□□□□□ -0.48
PTPRC-208ENST00000427110 FOXD1Q16676 465 aa11.27□□□□□ -0.61
PTPRC-208ENST00000427110 PLPPR3Q6T4P5 718 aa11.06□□□□□ -0.64
PTPRC-208ENST00000427110 PPP6R1Q9UPN7 881 aa10.76□□□□□ -0.69
PTPRC-208ENST00000427110 ADRA2BP18089 450 aa10.74□□□□□ -0.69
PTPRC-208ENST00000427110 PIAS4Q8N2W9 510 aaPredicted RBP10.58□□□□□ -0.72
PTPRC-208ENST00000427110 MSH5O43196 834 aa10.36□□□□□ -0.75
PTPRC-208ENST00000427110 MAPK8IP2Q13387 824 aaPredicted RBP9.81□□□□□ -0.84
PTPRC-208ENST00000427110 POTEDQ86YR6 584 aa9.78□□□□□ -0.84
PTPRC-208ENST00000427110 PPP4R3CPQ6ZMV5 832 aa9.77□□□□□ -0.85
PTPRC-208ENST00000427110 SCAF1Q9H7N4 1312 aaKnown RBP9.7□□□□□ -0.86
PTPRC-208ENST00000427110 DMRT2Q9Y5R5 561 aa9.6□□□□□ -0.87
PTPRC-208ENST00000427110 CNKSR2Q8WXI2 1034 aa9.48□□□□□ -0.89
PTPRC-208ENST00000427110 KCNA4P22459 653 aa9.42□□□□□ -0.9
PTPRC-208ENST00000427110 NCBP3Q53F19 620 aaKnown RBP9.4□□□□□ -0.9
PTPRC-208ENST00000427110 NPM3O75607 178 aaKnown RBP9.34□□□□□ -0.91
PTPRC-208ENST00000427110 HOXD11P31277 338 aaPredicted RBP9.33□□□□□ -0.92
PTPRC-208ENST00000427110 RNF216Q9NWF9 866 aaPredicted RBP9.32□□□□□ -0.92
PTPRC-208ENST00000427110 DCAF8L1A6NGE4 600 aa9.28□□□□□ -0.92
PTPRC-208ENST00000427110 DNAJC5BQ9UF47 199 aa8.95□□□□□ -0.98
PTPRC-208ENST00000427110 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.94□□□□□ -0.98
PTPRC-208ENST00000427110 SLC4A1APQ9BWU0 796 aaKnown RBP8.91□□□□□ -0.98
PTPRC-208ENST00000427110 RNF39Q9H2S5 420 aa8.91□□□□□ -0.98
PTPRC-208ENST00000427110 SLC4A2P04920 1241 aa8.87□□□□□ -0.99
PTPRC-208ENST00000427110 CACNB1Q02641 598 aaPredicted RBP8.81□□□□□ -1
PTPRC-208ENST00000427110 U3KPZ7 1027 aaPredicted RBP8.78□□□□□ -1
PTPRC-208ENST00000427110 C1QBPQ07021 282 aaKnown RBP8.75□□□□□ -1.01
PTPRC-208ENST00000427110 ZBTB22O15209 634 aa8.69□□□□□ -1.02
PTPRC-208ENST00000427110 FOXD4L1Q9NU39 408 aa8.65□□□□□ -1.02
PTPRC-208ENST00000427110 SPINK5Q9NQ38 1064 aaPredicted RBP8.62□□□□□ -1.03
PTPRC-208ENST00000427110 MYCNP04198 464 aaPredicted RBP8.59□□□□□ -1.03
PTPRC-208ENST00000427110 CAPN15O75808 1086 aa8.56□□□□□ -1.04
PTPRC-208ENST00000427110 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
PTPRC-208ENST00000427110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.52□□□□□ -1.05
PTPRC-208ENST00000427110 HNRNPUL2Q1KMD3 747 aaKnown RBP8.52□□□□□ -1.05
PTPRC-208ENST00000427110 SAMD1Q6SPF0 538 aaPredicted RBP8.52□□□□□ -1.05
PTPRC-208ENST00000427110 TRHP20396 242 aaPredicted RBP8.51□□□□□ -1.05
PTPRC-208ENST00000427110 CSRNP3Q8WYN3 585 aa8.47□□□□□ -1.05
PTPRC-208ENST00000427110 ATF5Q9Y2D1 282 aaPredicted RBP8.47□□□□□ -1.05
PTPRC-208ENST00000427110 APLP2Q06481 763 aa8.45□□□□□ -1.06
PTPRC-208ENST00000427110 ABCB7O75027 752 aa8.44□□□□□ -1.06
PTPRC-208ENST00000427110 DSG3P32926 999 aa8.43□□□□□ -1.06
PTPRC-208ENST00000427110 ZNF219Q9P2Y4 722 aaPredicted RBP8.41□□□□□ -1.06
PTPRC-208ENST00000427110 POLA2Q14181 598 aa8.31□□□□□ -1.08
PTPRC-208ENST00000427110 ATXN8OSP0DMR3 200 aa8.29□□□□□ -1.08
PTPRC-208ENST00000427110 ZBTB12Q9Y330 459 aaPredicted RBP8.08□□□□□ -1.12
PTPRC-208ENST00000427110 MKRN4PQ13434 485 aaPredicted RBP8.07□□□□□ -1.12
PTPRC-208ENST00000427110 OSCARQ8IYS5 282 aa8.07□□□□□ -1.12
PTPRC-208ENST00000427110 FBLN2P98095 1184 aa8.03□□□□□ -1.12
PTPRC-208ENST00000427110 RBM42Q9BTD8 480 aaKnown RBP7.98□□□□□ -1.13
PTPRC-208ENST00000427110 SPDYE2BA6NHP3 402 aa7.87□□□□□ -1.15
PTPRC-208ENST00000427110 SPDYE6P0CI01 402 aa7.87□□□□□ -1.15
PTPRC-208ENST00000427110 SPDYE2Q495Y8 402 aa7.87□□□□□ -1.15
PTPRC-208ENST00000427110 AKT1S1Q96B36 256 aa7.86□□□□□ -1.15
PTPRC-208ENST00000427110 ZNF692Q9BU19 519 aaPredicted RBP7.86□□□□□ -1.15
PTPRC-208ENST00000427110 REM2Q8IYK8 340 aaPredicted RBP7.84□□□□□ -1.15
PTPRC-208ENST00000427110 SSUH2Q9Y2M2 353 aa7.82□□□□□ -1.16
PTPRC-208ENST00000427110 SPDYE4A6NLX3 237 aa7.78□□□□□ -1.16
PTPRC-208ENST00000427110 PITPNM1O00562 1244 aa7.77□□□□□ -1.17
PTPRC-208ENST00000427110 CHRDL2Q6WN34 429 aa7.77□□□□□ -1.17
PTPRC-208ENST00000427110 PABPN1Q86U42 306 aaKnown RBP eCLIP7.77□□□□□ -1.17
PTPRC-208ENST00000427110 CLEC11AQ9Y240 323 aa7.73□□□□□ -1.17
PTPRC-208ENST00000427110 POTEHQ6S545 545 aa7.7□□□□□ -1.18
PTPRC-208ENST00000427110 FKBP8Q14318 412 aa7.68□□□□□ -1.18
PTPRC-208ENST00000427110 SPDYE1Q8NFV5 336 aaPredicted RBP7.68□□□□□ -1.18
PTPRC-208ENST00000427110 PIP4P2Q8N4L2 257 aa7.66□□□□□ -1.18
PTPRC-208ENST00000427110 FXR2P51116 673 aaKnown RBP eCLIP7.61□□□□□ -1.19
PTPRC-208ENST00000427110 PROM2Q8N271 834 aa7.6□□□□□ -1.19
PTPRC-208ENST00000427110 PRR29P0C7W0 189 aa7.59□□□□□ -1.19
PTPRC-208ENST00000427110 CHADLQ6NUI6 762 aa7.58□□□□□ -1.2
PTPRC-208ENST00000427110 PRKAR2AP13861 404 aaKnown RBP7.57□□□□□ -1.2
PTPRC-208ENST00000427110 STAG3Q9UJ98 1225 aa7.52□□□□□ -1.21
PTPRC-208ENST00000427110 CREBZFQ9NS37 354 aa7.48□□□□□ -1.21
PTPRC-208ENST00000427110 HAX1O00165 279 aa7.45□□□□□ -1.22
PTPRC-208ENST00000427110 FARP1Q9Y4F1 1045 aaPredicted RBP7.43□□□□□ -1.22
PTPRC-208ENST00000427110 EVX2Q03828 476 aa7.42□□□□□ -1.22
PTPRC-208ENST00000427110 MIER1Q8N108 512 aa7.39□□□□□ -1.23
PTPRC-208ENST00000427110 MNX1P50219 401 aaPredicted RBP7.38□□□□□ -1.23
PTPRC-208ENST00000427110 PLCD3Q8N3E9 789 aa7.38□□□□□ -1.23
PTPRC-208ENST00000427110 C19orf67A6NJJ6 358 aa7.36□□□□□ -1.23
PTPRC-208ENST00000427110 FBXO3Q9UK99 471 aa7.35□□□□□ -1.23
PTPRC-208ENST00000427110 CD44P16070 742 aaKnown RBP7.34□□□□□ -1.23
PTPRC-208ENST00000427110 VASPP50552 380 aaPredicted RBP7.32□□□□□ -1.24
PTPRC-208ENST00000427110 SP7Q8TDD2 431 aaPredicted RBP7.32□□□□□ -1.24
PTPRC-208ENST00000427110 PLEKHG5O94827 1062 aa7.31□□□□□ -1.24
PTPRC-208ENST00000427110 NPM1P06748 294 aaKnown RBP eCLIP7.3□□□□□ -1.24
PTPRC-208ENST00000427110 ZRANB1Q9UGI0 708 aa7.28□□□□□ -1.24
PTPRC-208ENST00000427110 TSPYL2Q9H2G4 693 aaPredicted RBP7.26□□□□□ -1.25
PTPRC-208ENST00000427110 RASEFQ8IZ41 740 aa7.25□□□□□ -1.25
PTPRC-208ENST00000427110 KLHL34Q8N239 644 aa7.24□□□□□ -1.25
PTPRC-208ENST00000427110 PHF12Q96QT6 1004 aa7.24□□□□□ -1.25
PTPRC-208ENST00000427110 IFNLR1Q8IU57 520 aaPredicted RBP7.23□□□□□ -1.25
PTPRC-208ENST00000427110 GABBR2O75899 941 aa7.22□□□□□ -1.25
PTPRC-208ENST00000427110 PAK3O75914 559 aaPredicted RBP7.22□□□□□ -1.25
PTPRC-208ENST00000427110 NUBP1P53384 320 aa7.22□□□□□ -1.25
PTPRC-208ENST00000427110 ZBTB47Q9UFB7 747 aaPredicted RBP7.21□□□□□ -1.26
PTPRC-208ENST00000427110 ZNF579Q8NAF0 562 aaKnown RBP7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms