RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 WDR4P57081 412 aaKnown RBP7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 FLIIQ13045 1269 aa7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 NBPF20Q3BBV1 942 aa7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 ATP13A2Q9NQ11 1180 aa7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 ZNF330Q9Y3S2 320 aaPredicted RBP7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 EMILIN1Q9Y6C2 1016 aa7.94□□□□□ -1.14
HMGB3P23-201ENST00000414981 FSHRP23945 695 aa7.93□□□□□ -1.14
HMGB3P23-201ENST00000414981 DHX9Q08211 1270 aaKnown RBP7.93□□□□□ -1.14
HMGB3P23-201ENST00000414981 MCM6Q14566 821 aa7.93□□□□□ -1.14
HMGB3P23-201ENST00000414981 CCDC125Q86Z20 511 aa7.93□□□□□ -1.14
HMGB3P23-201ENST00000414981 CCDC116Q8IYX3 515 aa7.93□□□□□ -1.14
HMGB3P23-201ENST00000414981 SEPT12Q8IYM1 358 aa7.92□□□□□ -1.14
HMGB3P23-201ENST00000414981 SENP2Q9HC62 589 aa7.92□□□□□ -1.14
HMGB3P23-201ENST00000414981 TBC1D2BQ9UPU7 963 aa7.92□□□□□ -1.14
HMGB3P23-201ENST00000414981 ESPNB1AK53 854 aa7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 POTECB2RU33 542 aa7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 ZIC2O95409 532 aaPredicted RBP7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 TRIM52Q96A61 297 aa7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 ITPKCQ96DU7 683 aa7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 PGPEP1Q9NXJ5 209 aa7.91□□□□□ -1.14
HMGB3P23-201ENST00000414981 INTS6LQ5JSJ4 861 aaKnown RBP7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 PPP1R26Q5T8A7 1209 aaPredicted RBP7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 KIFC2Q96AC6 838 aa7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 GDPD2Q9HCC8 539 aa7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 GMPR2Q9P2T1 348 aaKnown RBP7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 PCDHB9Q9Y5E1 797 aa7.9□□□□□ -1.14
HMGB3P23-201ENST00000414981 IRF5Q13568 498 aa7.89□□□□□ -1.15
HMGB3P23-201ENST00000414981 WASHC4Q2M389 1173 aa7.89□□□□□ -1.15
HMGB3P23-201ENST00000414981 ZFAND3Q9H8U3 227 aa7.89□□□□□ -1.15
HMGB3P23-201ENST00000414981 C11orf95C9JLR9 678 aaPredicted RBP7.88□□□□□ -1.15
HMGB3P23-201ENST00000414981 RNF20Q5VTR2 975 aa7.88□□□□□ -1.15
HMGB3P23-201ENST00000414981 TRIM46Q7Z4K8 759 aa7.88□□□□□ -1.15
HMGB3P23-201ENST00000414981 GIGYF1O75420 1035 aaPredicted RBP7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 EIF4G2P78344 907 aaKnown RBP eCLIP7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 SCARF1Q14162 830 aa7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 MRPL14Q6P1L8 145 aaKnown RBP7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 Q6ZVU0 165 aa7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 TRIM47Q96LD4 638 aa7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 COG6Q9Y2V7 657 aa7.87□□□□□ -1.15
HMGB3P23-201ENST00000414981 ERVH48-1M5A8F1 160 aa7.86□□□□□ -1.15
HMGB3P23-201ENST00000414981 ABL2P42684 1182 aa7.86□□□□□ -1.15
HMGB3P23-201ENST00000414981 CEP126Q9P2H0 1117 aa7.86□□□□□ -1.15
HMGB3P23-201ENST00000414981 MEIOBQ8N635 442 aa7.85□□□□□ -1.15
HMGB3P23-201ENST00000414981 TSEN34Q9BSV6 310 aaKnown RBP7.85□□□□□ -1.15
HMGB3P23-201ENST00000414981 RAD21O60216 631 aa7.84□□□□□ -1.15
HMGB3P23-201ENST00000414981 UPP2O95045 317 aa7.84□□□□□ -1.15
HMGB3P23-201ENST00000414981 BMP1P13497 986 aa7.84□□□□□ -1.15
HMGB3P23-201ENST00000414981 WWC1Q8IX03 1113 aa7.84□□□□□ -1.15
HMGB3P23-201ENST00000414981 ZFP42Q96MM3 310 aa7.84□□□□□ -1.15
HMGB3P23-201ENST00000414981 UBTFP17480 764 aaKnown RBP7.83□□□□□ -1.16
HMGB3P23-201ENST00000414981 SOX11P35716 441 aa7.83□□□□□ -1.16
HMGB3P23-201ENST00000414981 TMPRSS4Q9NRS4 437 aa7.83□□□□□ -1.16
HMGB3P23-201ENST00000414981 LILRA1O75019 489 aa7.82□□□□□ -1.16
HMGB3P23-201ENST00000414981 SNRPBP14678 240 aaKnown RBP7.82□□□□□ -1.16
HMGB3P23-201ENST00000414981 RAB15P59190 212 aa7.82□□□□□ -1.16
HMGB3P23-201ENST00000414981 VAC14Q08AM6 782 aa7.82□□□□□ -1.16
HMGB3P23-201ENST00000414981 ADD1P35611 737 aaKnown RBP7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 CBLBQ13191 982 aa7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 LINC00528Q8N1L1 170 aa7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 PHTF2Q8N3S3 785 aa7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 ZNF784Q8NCA9 323 aaPredicted RBP7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 POM121Q96HA1 1249 aa7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 PURBQ96QR8 312 aaKnown RBP7.81□□□□□ -1.16
HMGB3P23-201ENST00000414981 BMP2P12643 396 aa7.8□□□□□ -1.16
HMGB3P23-201ENST00000414981 SEMA3FQ13275 785 aa7.79□□□□□ -1.16
HMGB3P23-201ENST00000414981 ZNF775Q96BV0 537 aaPredicted RBP7.79□□□□□ -1.16
HMGB3P23-201ENST00000414981 SPINT1O43278 529 aa7.78□□□□□ -1.16
HMGB3P23-201ENST00000414981 ERVK-9P63128 1117 aa7.78□□□□□ -1.16
HMGB3P23-201ENST00000414981 C6orf118Q5T5N4 469 aa7.78□□□□□ -1.16
HMGB3P23-201ENST00000414981 CC2D2BQ6DHV5 1058 aa7.78□□□□□ -1.16
HMGB3P23-201ENST00000414981 ADH1AP07327 375 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 PTGIRP43119 386 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 SLFNL1Q499Z3 407 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 ALG2Q9H553 416 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 CYLDQ9NQC7 956 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 CHIC2Q9UKJ5 165 aa7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 SOS2Q07890 1332 aaPredicted RBP7.77□□□□□ -1.17
HMGB3P23-201ENST00000414981 KDF1Q8NAX2 398 aaPredicted RBP7.76□□□□□ -1.17
HMGB3P23-201ENST00000414981 ESF1Q9H501 851 aaKnown RBP7.76□□□□□ -1.17
HMGB3P23-201ENST00000414981 PCDHB11Q9Y5F2 797 aa7.76□□□□□ -1.17
HMGB3P23-201ENST00000414981 A6NJR5 290 aa7.75□□□□□ -1.17
HMGB3P23-201ENST00000414981 RNF135Q8IUD6 432 aa7.75□□□□□ -1.17
HMGB3P23-201ENST00000414981 FNBP4Q8N3X1 1017 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P23-201ENST00000414981 AGBL1Q96MI9 1066 aa7.75□□□□□ -1.17
HMGB3P23-201ENST00000414981 CCDC85AQ96PX6 553 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P23-201ENST00000414981 TTLL8A6PVC2 850 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 ATP5J2-PTCD1G3V325 749 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 TRAK2O60296 914 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 RELBQ01201 579 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 USP4Q13107 963 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 MAP7D1Q3KQU3 841 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 TSGA10IPQ3SY00 556 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 NPAS3Q8IXF0 933 aa7.74□□□□□ -1.17
HMGB3P23-201ENST00000414981 MAN1A2O60476 641 aa7.73□□□□□ -1.17
HMGB3P23-201ENST00000414981 CLUAP1Q96AJ1 413 aa7.73□□□□□ -1.17
HMGB3P23-201ENST00000414981 SIRT1Q96EB6 747 aa7.73□□□□□ -1.17
HMGB3P23-201ENST00000414981 ZNF395Q9H8N7 513 aaPredicted RBP7.73□□□□□ -1.17
HMGB3P23-201ENST00000414981 MYCP01106 439 aaPredicted RBP7.72□□□□□ -1.17
HMGB3P23-201ENST00000414981 SCTRP47872 440 aa7.72□□□□□ -1.17
HMGB3P23-201ENST00000414981 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms