RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ZSCAN25Q6NSZ9 544 aa20.77■□□□□ 0.92
PHRF1-202ENST00000413872 TMPOP42166 694 aaKnown RBP20.76■□□□□ 0.91
PHRF1-202ENST00000413872 FANCIQ9NVI1 1328 aa20.76■□□□□ 0.91
PHRF1-202ENST00000413872 THOC2Q8NI27 1593 aaKnown RBP20.76■□□□□ 0.91
PHRF1-202ENST00000413872 PDCP20941 246 aa20.76■□□□□ 0.91
PHRF1-202ENST00000413872 FBXO31Q5XUX0 539 aaPredicted RBP20.76■□□□□ 0.91
PHRF1-202ENST00000413872 PDZRN3Q9UPQ7 1066 aa20.76■□□□□ 0.91
PHRF1-202ENST00000413872 NACAP1Q9BZK3 213 aa20.75■□□□□ 0.91
PHRF1-202ENST00000413872 MYL6BP14649 208 aa20.74■□□□□ 0.91
PHRF1-202ENST00000413872 MVPQ14764 893 aaKnown RBP20.74■□□□□ 0.91
PHRF1-202ENST00000413872 GOLGA6L1Q8N7Z2 621 aa20.74■□□□□ 0.91
PHRF1-202ENST00000413872 NSD2O96028 1365 aa20.74■□□□□ 0.91
PHRF1-202ENST00000413872 RPAP2Q8IXW5 612 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-202ENST00000413872 RABEP1Q15276 862 aa20.73■□□□□ 0.91
PHRF1-202ENST00000413872 ADGRF5Q8IZF2 1346 aa20.73■□□□□ 0.91
PHRF1-202ENST00000413872 SCAF11Q99590 1463 aaKnown RBP20.73■□□□□ 0.91
PHRF1-202ENST00000413872 SASS6Q6UVJ0 657 aa20.72■□□□□ 0.91
PHRF1-202ENST00000413872 CEP126Q9P2H0 1117 aa20.72■□□□□ 0.91
PHRF1-202ENST00000413872 PCMTD1Q96MG8 357 aaPredicted RBP20.72■□□□□ 0.91
PHRF1-202ENST00000413872 PLCH2O75038 1416 aa20.72■□□□□ 0.91
PHRF1-202ENST00000413872 IKQ13123 557 aaPredicted RBP20.72■□□□□ 0.91
PHRF1-202ENST00000413872 C14orf93Q9H972 538 aaKnown RBP20.72■□□□□ 0.91
PHRF1-202ENST00000413872 TNRQ92752 1358 aa20.72■□□□□ 0.91
PHRF1-202ENST00000413872 BCAR3O75815 825 aa20.71■□□□□ 0.91
PHRF1-202ENST00000413872 ZNF652Q9Y2D9 606 aa20.71■□□□□ 0.91
PHRF1-202ENST00000413872 WDR97A6NE52 1622 aa20.71■□□□□ 0.91
PHRF1-202ENST00000413872 A0A0U1RQG5 324 aaPredicted RBP20.71■□□□□ 0.91
PHRF1-202ENST00000413872 C1orf115Q9H7X2 142 aa20.71■□□□□ 0.91
PHRF1-202ENST00000413872 IFT57Q9NWB7 429 aa20.7■□□□□ 0.9
PHRF1-202ENST00000413872 TMOD3Q9NYL9 352 aa20.7■□□□□ 0.9
PHRF1-202ENST00000413872 NOS1P29475 1434 aa20.7■□□□□ 0.9
PHRF1-202ENST00000413872 KDM5BQ9UGL1 1544 aa20.7■□□□□ 0.9
PHRF1-202ENST00000413872 GPATCH8Q9UKJ3 1502 aaKnown RBP20.7■□□□□ 0.9
PHRF1-202ENST00000413872 CADPS2Q86UW7 1296 aa20.69■□□□□ 0.9
PHRF1-202ENST00000413872 CEBPAP49715 358 aaPredicted RBP20.69■□□□□ 0.9
PHRF1-202ENST00000413872 CCDC70Q6NSX1 233 aa20.69■□□□□ 0.9
PHRF1-202ENST00000413872 TTC21BQ7Z4L5 1316 aa20.68■□□□□ 0.9
PHRF1-202ENST00000413872 SRGAP3O43295 1099 aa20.68■□□□□ 0.9
PHRF1-202ENST00000413872 ANKRD1Q15327 319 aa20.68■□□□□ 0.9
PHRF1-202ENST00000413872 SAMD1Q6SPF0 538 aaPredicted RBP20.68■□□□□ 0.9
PHRF1-202ENST00000413872 RAPGEF6Q8TEU7 1601 aa20.68■□□□□ 0.9
PHRF1-202ENST00000413872 GSE1Q14687 1217 aa20.68■□□□□ 0.9
PHRF1-202ENST00000413872 TAF7Q15545 349 aaPredicted RBP20.68■□□□□ 0.9
PHRF1-202ENST00000413872 FOXO3O43524 673 aa20.67■□□□□ 0.9
PHRF1-202ENST00000413872 ASXL2Q76L83 1435 aa20.67■□□□□ 0.9
PHRF1-202ENST00000413872 NEK4P51957 841 aa20.67■□□□□ 0.9
PHRF1-202ENST00000413872 NME9Q86XW9 330 aa20.67■□□□□ 0.9
PHRF1-202ENST00000413872 RPRD2Q5VT52 1461 aaKnown RBP20.67■□□□□ 0.9
PHRF1-202ENST00000413872 IGHMBP2P38935 993 aaKnown RBP20.67■□□□□ 0.9
PHRF1-202ENST00000413872 LARP1Q6PKG0 1096 aaKnown RBP20.67■□□□□ 0.9
PHRF1-202ENST00000413872 SLFN5Q08AF3 891 aa20.66■□□□□ 0.9
PHRF1-202ENST00000413872 SIL1Q9H173 461 aa20.66■□□□□ 0.9
PHRF1-202ENST00000413872 DUSP27Q5VZP5 1158 aa20.65■□□□□ 0.9
PHRF1-202ENST00000413872 NAT10Q9H0A0 1025 aaKnown RBP20.65■□□□□ 0.9
PHRF1-202ENST00000413872 ALDH1L2Q3SY69 923 aa20.65■□□□□ 0.9
PHRF1-202ENST00000413872 AMER1Q5JTC6 1135 aaPredicted RBP20.65■□□□□ 0.9
PHRF1-202ENST00000413872 CTNNA3Q9UI47 895 aa20.64■□□□□ 0.9
PHRF1-202ENST00000413872 ATP10BO94823 1461 aa20.64■□□□□ 0.89
PHRF1-202ENST00000413872 CYP46A1Q9Y6A2 500 aa20.64■□□□□ 0.89
PHRF1-202ENST00000413872 ARID3AQ99856 593 aa20.64■□□□□ 0.89
PHRF1-202ENST00000413872 HSP90AB3PQ58FF7 597 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 RRP12Q5JTH9 1297 aaKnown RBP20.63■□□□□ 0.89
PHRF1-202ENST00000413872 AACSQ86V21 672 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 DUOX2Q9NRD8 1548 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 ZNF518AQ6AHZ1 1483 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 FOSBP53539 338 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 UNC13AQ9UPW8 1703 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 OLFM4Q6UX06 510 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 KRT28Q7Z3Y7 464 aa20.63■□□□□ 0.89
PHRF1-202ENST00000413872 PDE4CQ08493 712 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 SDF4Q9BRK5 362 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 PPP1R1BQ9UD71 204 aaPredicted RBP20.62■□□□□ 0.89
PHRF1-202ENST00000413872 TXLNAP40222 546 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 CHD1LQ86WJ1 897 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 TRIM22Q8IYM9 498 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 ZNF396Q96N95 335 aaPredicted RBP20.62■□□□□ 0.89
PHRF1-202ENST00000413872 R3HCC1Q9Y3T6 440 aaKnown RBP20.62■□□□□ 0.89
PHRF1-202ENST00000413872 A2MP01023 1474 aa20.62■□□□□ 0.89
PHRF1-202ENST00000413872 PRM3Q9NNZ6 103 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 UHRF1BP1LA0JNW5 1464 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 MTMR7Q9Y216 660 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 MBD3O95983 291 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 AKAP2Q9Y2D5 859 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 WDR7Q9Y4E6 1490 aa20.61■□□□□ 0.89
PHRF1-202ENST00000413872 JMYQ8N9B5 988 aa20.6■□□□□ 0.89
PHRF1-202ENST00000413872 LETM1O95202 739 aaPredicted RBP20.6■□□□□ 0.89
PHRF1-202ENST00000413872 ITSN2Q9NZM3 1697 aa20.6■□□□□ 0.89
PHRF1-202ENST00000413872 CCAR1Q8IX12 1150 aaKnown RBP20.6■□□□□ 0.89
PHRF1-202ENST00000413872 KRT32Q14532 448 aa20.59■□□□□ 0.89
PHRF1-202ENST00000413872 MCM10Q7L590 875 aa20.59■□□□□ 0.89
PHRF1-202ENST00000413872 TEX13AQ9BXU3 409 aaPredicted RBP20.59■□□□□ 0.89
PHRF1-202ENST00000413872 RAB11FIP3O75154 756 aa20.59■□□□□ 0.89
PHRF1-202ENST00000413872 ZPR1O75312 459 aa20.59■□□□□ 0.89
PHRF1-202ENST00000413872 AEBP1Q8IUX7 1158 aa20.59■□□□□ 0.89
PHRF1-202ENST00000413872 EXOC5O00471 708 aa20.58■□□□□ 0.89
PHRF1-202ENST00000413872 EMILIN1Q9Y6C2 1016 aa20.58■□□□□ 0.89
PHRF1-202ENST00000413872 PTCD1O75127 700 aaKnown RBP20.58■□□□□ 0.89
PHRF1-202ENST00000413872 FKBP4Q02790 459 aaKnown RBP eCLIP20.58■□□□□ 0.883e-6■□□□□ 10.7
PHRF1-202ENST00000413872 KIF1BPQ96EK5 621 aa20.58■□□□□ 0.88
PHRF1-202ENST00000413872 ANKRD36BQ8N2N9 1353 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms