RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TNMDQ9H2S6 317 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 SLC52A1Q9NWF4 448 aa7.2□□□□□ -1.26
SCN1A-203ENST00000409050 HMGB1P09429 215 aaKnown RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 AMER1Q5JTC6 1135 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 PDILTQ8N807 584 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 SLC26A8Q96RN1 970 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 BACH2Q9BYV9 841 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 ZNF287Q9HBT7 754 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 GOLGA6L10A0A0M3HER8 536 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 POTEJP0CG39 1038 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 KIF6Q6ZMV9 814 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 ZSCAN30Q86W11 494 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 ARID3AQ99856 593 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 LRRCC1Q9C099 1032 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 GRPEL1Q9HAV7 217 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 NEK4P51957 841 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 SEPT7Q16181 437 aaKnown RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 UVSSAQ2YD98 709 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 AXDND1Q5T1B0 1012 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 FILIP1Q7Z7B0 1213 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 ZNF397Q8NF99 534 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 FEZ1Q99689 392 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 SCAND2PQ9GZW5 306 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC141Q6ZP82 1450 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC91Q7Z6B0 441 aa7.19□□□□□ -1.26
SCN1A-203ENST00000409050 SERPINC1P01008 464 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 EIF2S2P20042 333 aaKnown RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 PPP2R1AP30153 589 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 ALDH1L2Q3SY69 923 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 LTV1Q96GA3 475 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 NF2P35240 595 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 GSDMDP57764 484 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 PDZRN3Q9UPQ7 1066 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 GBP2P32456 591 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 CALCOCO1Q9P1Z2 691 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 NCAPD3P42695 1498 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 MINK1Q8N4C8 1332 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 PPP1R12BO60237 982 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 PLIN1O60240 522 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 MVPQ14764 893 aaKnown RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 TCP11L2Q8N4U5 519 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 TAF4BQ92750 862 aa7.18□□□□□ -1.26
SCN1A-203ENST00000409050 CGNQ9P2M7 1197 aaKnown RBP7.18□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC196A0A1B0GTZ2 297 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 SURF6O75683 361 aaKnown RBP7.17□□□□□ -1.26
SCN1A-203ENST00000409050 TWISTNBQ3B726 338 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-203ENST00000409050 BCL2L13Q9BXK5 485 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 NUP62CLQ9H1M0 184 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 NSD2O96028 1365 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 GRIN2BQ13224 1484 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 FCHSD2O94868 740 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 SOGA3Q5TF21 947 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 MAP3K1Q13233 1512 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 SHTN1A0MZ66 631 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 HECW1Q76N89 1606 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 FGD5Q6ZNL6 1462 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 ATF7IPQ6VMQ6 1270 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 ANO10Q9NW15 660 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 ESPNB1AK53 854 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 ELL2O00472 640 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-203ENST00000409050 NCBP3Q53F19 620 aaKnown RBP7.17□□□□□ -1.26
SCN1A-203ENST00000409050 BLOC1S2Q6QNY1 142 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 VPS36Q86VN1 386 aa7.17□□□□□ -1.26
SCN1A-203ENST00000409050 KRT18P05783 430 aaKnown RBP7.16□□□□□ -1.26
SCN1A-203ENST00000409050 TUBBP07437 444 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 MCM4P33991 863 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 HOOK3Q86VS8 718 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 PRPF40AO75400 957 aaKnown RBP7.16□□□□□ -1.26
SCN1A-203ENST00000409050 MAP3K11Q16584 847 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 TMCO3Q6UWJ1 677 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 UBXN4Q92575 508 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 NEUROD6Q96NK8 337 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 CCDC69A6NI79 296 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 ATF3P18847 181 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 EPB41L2O43491 1005 aaKnown RBP7.16□□□□□ -1.26
SCN1A-203ENST00000409050 EHBP1Q8NDI1 1231 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 UPF3BQ9BZI7 483 aaKnown RBP7.16□□□□□ -1.26
SCN1A-203ENST00000409050 LRRC27Q9C0I9 530 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 SPG7Q9UQ90 795 aa7.16□□□□□ -1.26
SCN1A-203ENST00000409050 TTC39AQ5SRH9 613 aa7.15□□□□□ -1.26
SCN1A-203ENST00000409050 DDX19AQ9NUU7 478 aaKnown RBP7.15□□□□□ -1.26
SCN1A-203ENST00000409050 TATP17735 454 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-203ENST00000409050 CHD1LQ86WJ1 897 aa7.15□□□□□ -1.26
SCN1A-203ENST00000409050 NAA15Q9BXJ9 866 aaKnown RBP7.15□□□□□ -1.26
SCN1A-203ENST00000409050 RAB34Q9BZG1 259 aa7.15□□□□□ -1.26
SCN1A-203ENST00000409050 GCOM1H8Y6P7 765 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-203ENST00000409050 MYZAPP0CAP1 466 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 LARP1BQ659C4 914 aaKnown RBP7.15□□□□□ -1.27
SCN1A-203ENST00000409050 KIF18AQ8NI77 898 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 SPATA32Q96LK8 384 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 AKAP2Q9Y2D5 859 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 AQRO60306 1485 aaKnown RBP eCLIP7.15□□□□□ -1.27
SCN1A-203ENST00000409050 CCDC183Q5T5S1 534 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 PRIMPOLQ96LW4 560 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 CRACR2AQ9BSW2 395 aa7.15□□□□□ -1.27
SCN1A-203ENST00000409050 NEFHP12036 1026 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 SLC4A3P48751 1232 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 ZFYVE27Q5T4F4 411 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 KANK3Q6NY19 840 aa7.14□□□□□ -1.27
SCN1A-203ENST00000409050 FMNL2Q96PY5 1086 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms