RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 VIRMAQ69YN4 1812 aaKnown RBP21.16■□□□□ 0.98
PTPRA-205ENST00000399903 PTMAP06454 111 aaKnown RBP21.15■□□□□ 0.98
PTPRA-205ENST00000399903 GAS2L2Q8NHY3 880 aa21.15■□□□□ 0.98
PTPRA-205ENST00000399903 TMEM131LA2VDJ0 1609 aa21.15■□□□□ 0.98
PTPRA-205ENST00000399903 ARHGEF28Q8N1W1 1705 aaKnown RBP21.15■□□□□ 0.98
PTPRA-205ENST00000399903 ANKRD45Q5TZF3 282 aa21.14■□□□□ 0.98
PTPRA-205ENST00000399903 PRDM4Q9UKN5 801 aa21.14■□□□□ 0.97
PTPRA-205ENST00000399903 RIMS2Q9UQ26 1411 aa21.14■□□□□ 0.97
PTPRA-205ENST00000399903 HDGFL2Q7Z4V5 671 aaPredicted RBP21.14■□□□□ 0.97
PTPRA-205ENST00000399903 RBM27Q9P2N5 1060 aaKnown RBP21.14■□□□□ 0.97
PTPRA-205ENST00000399903 CLTCQ00610 1675 aaKnown RBP21.13■□□□□ 0.97
PTPRA-205ENST00000399903 SOX12O15370 315 aa21.13■□□□□ 0.97
PTPRA-205ENST00000399903 SMC5Q8IY18 1101 aa21.13■□□□□ 0.97
PTPRA-205ENST00000399903 ZMYM3Q14202 1370 aa21.13■□□□□ 0.97
PTPRA-205ENST00000399903 EXOSC9Q06265 439 aaKnown RBP21.13■□□□□ 0.97
PTPRA-205ENST00000399903 PTPRMP28827 1452 aa21.13■□□□□ 0.97
PTPRA-205ENST00000399903 K7ELQ4 463 aaPredicted RBP21.12■□□□□ 0.97
PTPRA-205ENST00000399903 BAG4O95429 457 aaKnown RBP21.12■□□□□ 0.97
PTPRA-205ENST00000399903 TRIM27P14373 513 aa21.12■□□□□ 0.97
PTPRA-205ENST00000399903 C1orf115Q9H7X2 142 aa21.12■□□□□ 0.97
PTPRA-205ENST00000399903 METP08581 1390 aa21.12■□□□□ 0.97
PTPRA-205ENST00000399903 SLC26A8Q96RN1 970 aa21.12■□□□□ 0.97
PTPRA-205ENST00000399903 CHAMP1Q96JM3 812 aa21.11■□□□□ 0.97
PTPRA-205ENST00000399903 PPP1R9BQ96SB3 815 aa21.11■□□□□ 0.97
PTPRA-205ENST00000399903 CIZ1Q9ULV3 898 aaPredicted RBP21.11■□□□□ 0.97
PTPRA-205ENST00000399903 HMOX1P09601 288 aa21.1■□□□□ 0.97
PTPRA-205ENST00000399903 TMEM57Q8N5G2 664 aa21.1■□□□□ 0.97
PTPRA-205ENST00000399903 RBSNQ9H1K0 784 aa21.1■□□□□ 0.97
PTPRA-205ENST00000399903 NOB1Q9ULX3 412 aaKnown RBP21.1■□□□□ 0.97
PTPRA-205ENST00000399903 ZC3H13Q5T200 1668 aaKnown RBP21.1■□□□□ 0.97
PTPRA-205ENST00000399903 NME9Q86XW9 330 aa21.1■□□□□ 0.97
PTPRA-205ENST00000399903 TSC1Q92574 1164 aa21.1■□□□□ 0.97
PTPRA-205ENST00000399903 JARID2Q92833 1246 aaPredicted RBP21.1■□□□□ 0.97
PTPRA-205ENST00000399903 A2ML1A8K2U0 1454 aa21.09■□□□□ 0.97
PTPRA-205ENST00000399903 PRPF40AO75400 957 aaKnown RBP21.09■□□□□ 0.97
PTPRA-205ENST00000399903 ALKQ9UM73 1620 aa21.09■□□□□ 0.97
PTPRA-205ENST00000399903 PRIM1P49642 420 aaKnown RBP21.08■□□□□ 0.97
PTPRA-205ENST00000399903 AAMPQ13685 434 aa21.08■□□□□ 0.97
PTPRA-205ENST00000399903 SSH1Q8WYL5 1049 aa21.08■□□□□ 0.97
PTPRA-205ENST00000399903 DDX19BQ9UMR2 479 aa21.08■□□□□ 0.97
PTPRA-205ENST00000399903 FOXD4L6Q3SYB3 417 aaPredicted RBP21.08■□□□□ 0.96
PTPRA-205ENST00000399903 FOXD4L3Q6VB84 417 aaPredicted RBP21.08■□□□□ 0.96
PTPRA-205ENST00000399903 PTMSP20962 102 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 EMILIN1Q9Y6C2 1016 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 KLHL40Q2TBA0 621 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 ZSCAN23Q3MJ62 389 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 SNX21Q969T3 373 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 ZFYVE9O95405 1425 aa21.07■□□□□ 0.96
PTPRA-205ENST00000399903 FAM177BA6PVY3 158 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 TRHP20396 242 aaPredicted RBP21.06■□□□□ 0.96
PTPRA-205ENST00000399903 DDIT3P35638 169 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 MAP7D2Q96T17 732 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 ATAD2Q6PL18 1390 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 ABCC11Q96J66 1382 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 RBM25P49756 843 aaKnown RBP21.06■□□□□ 0.96
PTPRA-205ENST00000399903 RRS1Q15050 365 aaKnown RBP21.06■□□□□ 0.96
PTPRA-205ENST00000399903 PKP1Q13835 747 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 NGEFQ8N5V2 710 aa21.06■□□□□ 0.96
PTPRA-205ENST00000399903 THUMPD2Q9BTF0 503 aaKnown RBP21.05■□□□□ 0.96
PTPRA-205ENST00000399903 CHD1LQ86WJ1 897 aa21.04■□□□□ 0.96
PTPRA-205ENST00000399903 WDR63Q8IWG1 891 aa21.04■□□□□ 0.96
PTPRA-205ENST00000399903 SYCE3A1L190 88 aa21.03■□□□□ 0.96
PTPRA-205ENST00000399903 DIAPH1O60610 1272 aaKnown RBP21.03■□□□□ 0.96
PTPRA-205ENST00000399903 ATF7IPQ6VMQ6 1270 aa21.03■□□□□ 0.96
PTPRA-205ENST00000399903 LTKP29376 864 aa21.03■□□□□ 0.96
PTPRA-205ENST00000399903 CD163L1Q9NR16 1453 aa21.03■□□□□ 0.96
PTPRA-205ENST00000399903 TBC1D9Q6ZT07 1266 aa21.03■□□□□ 0.96
PTPRA-205ENST00000399903 APBB1O00213 710 aa21.02■□□□□ 0.96
PTPRA-205ENST00000399903 NUDT16Q96DE0 195 aaKnown RBP21.02■□□□□ 0.96
PTPRA-205ENST00000399903 WASLO00401 505 aaPredicted RBP21.02■□□□□ 0.96
PTPRA-205ENST00000399903 CBX1P83916 185 aa21.02■□□□□ 0.96
PTPRA-205ENST00000399903 NOL7Q9UMY1 257 aaKnown RBP21.02■□□□□ 0.96
PTPRA-205ENST00000399903 TMPOP42166 694 aaKnown RBP21.01■□□□□ 0.95
PTPRA-205ENST00000399903 AK9Q5TCS8 1911 aa21.01■□□□□ 0.95
PTPRA-205ENST00000399903 HDAC1Q13547 482 aaPredicted RBP21.01■□□□□ 0.95
PTPRA-205ENST00000399903 KIF2CQ99661 725 aa21.01■□□□□ 0.95
PTPRA-205ENST00000399903 SHPRHQ149N8 1683 aa21■□□□□ 0.95
PTPRA-205ENST00000399903 POLKQ9UBT6 870 aa21■□□□□ 0.95
PTPRA-205ENST00000399903 PUS7Q96PZ0 661 aaKnown RBP21■□□□□ 0.95
PTPRA-205ENST00000399903 PRKAR2BP31323 418 aa20.99■□□□□ 0.95
PTPRA-205ENST00000399903 ELL2O00472 640 aaPredicted RBP20.99■□□□□ 0.95
PTPRA-205ENST00000399903 ZKSCAN5Q9Y2L8 839 aa20.99■□□□□ 0.95
PTPRA-205ENST00000399903 PLCB2Q00722 1185 aa20.99■□□□□ 0.95
PTPRA-205ENST00000399903 ZNF830Q96NB3 372 aaPredicted RBP20.98■□□□□ 0.95
PTPRA-205ENST00000399903 TNRQ92752 1358 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 ARHGEF40Q8TER5 1519 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 NUCB1Q02818 461 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 NOL8Q76FK4 1167 aaKnown RBP20.98■□□□□ 0.95
PTPRA-205ENST00000399903 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.98■□□□□ 0.95
PTPRA-205ENST00000399903 TRIM35Q9UPQ4 493 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 PHACTR3Q96KR7 559 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
PTPRA-205ENST00000399903 RBM33Q96EV2 1170 aaKnown RBP20.97■□□□□ 0.95
PTPRA-205ENST00000399903 PLEKHF1Q96S99 279 aa20.97■□□□□ 0.95
PTPRA-205ENST00000399903 CSPP1Q1MSJ5 1256 aa20.96■□□□□ 0.95
PTPRA-205ENST00000399903 KIF16BQ96L93 1317 aa20.96■□□□□ 0.95
PTPRA-205ENST00000399903 NSD2O96028 1365 aa20.96■□□□□ 0.95
PTPRA-205ENST00000399903 DYNC1I1O14576 645 aa20.96■□□□□ 0.95
PTPRA-205ENST00000399903 IGSF3O75054 1194 aa20.96■□□□□ 0.95
PTPRA-205ENST00000399903 ZGPATQ8N5A5 531 aaKnown RBP20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms