RNA–Protein interactions for RNA: ENST00000397537.2

SMCO1-201, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO1, Length 1,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-201ENST00000397537 COL19A1Q14993 1142 aa9.06□□□□□ -0.96
SMCO1-201ENST00000397537 NUTM2DQ5VT03 806 aaPredicted RBP9.06□□□□□ -0.96
SMCO1-201ENST00000397537 NUTM2AQ8IVF1 878 aaPredicted RBP9.06□□□□□ -0.96
SMCO1-201ENST00000397537 GMLQ99445 158 aa9.06□□□□□ -0.96
SMCO1-201ENST00000397537 TMEM106CQ9BVX2 250 aa9.06□□□□□ -0.96
SMCO1-201ENST00000397537 TGIF2Q9GZN2 237 aa9.06□□□□□ -0.96
SMCO1-201ENST00000397537 PCDH12Q9NPG4 1184 aa9.06□□□□□ -0.96
SMCO1-201ENST00000397537 FAM196BA6NMK8 535 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 H3BRB1 525 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 PAX3P23760 479 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 CTDSPL2Q05D32 466 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 BMS1Q14692 1282 aaKnown RBP9.05□□□□□ -0.96
SMCO1-201ENST00000397537 TUT1Q9H6E5 874 aaKnown RBP9.05□□□□□ -0.96
SMCO1-201ENST00000397537 PEG3Q9GZU2 1588 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 ZNF608Q9ULD9 1512 aaPredicted RBP9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L15C9J2P7 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L10C9JJH3 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L13C9JLJ4 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L12C9JPN9 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L11C9JVI0 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L21D6R901 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L18D6R9N7 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L22D6RA61 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L17D6RBQ6 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L19D6RCP7 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L20D6RJB6 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 HSD3B2P26439 372 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 TNNI2P48788 182 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L24Q0WX57 530 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 PPP1R18Q6NYC8 613 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 EPS8L1Q8TE68 723 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 ACBD3Q9H3P7 528 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 G3BP2Q9UN86 482 aaKnown RBP9.05□□□□□ -0.96
SMCO1-201ENST00000397537 MRPL42Q9Y6G3 142 aaKnown RBP9.05□□□□□ -0.96
SMCO1-201ENST00000397537 FANCD2Q9BXW9 1451 aa9.05□□□□□ -0.96
SMCO1-201ENST00000397537 DNAJA1P31689 397 aaKnown RBP9.04□□□□□ -0.96
SMCO1-201ENST00000397537 APLP1P51693 650 aa9.04□□□□□ -0.96
SMCO1-201ENST00000397537 ZNF211Q13398 564 aaPredicted RBP9.04□□□□□ -0.96
SMCO1-201ENST00000397537 RNF187Q5TA31 235 aaPredicted RBP9.04□□□□□ -0.96
SMCO1-201ENST00000397537 CCDC146Q8IYE0 955 aa9.04□□□□□ -0.96
SMCO1-201ENST00000397537 STAG1Q8WVM7 1258 aa9.04□□□□□ -0.96
SMCO1-201ENST00000397537 CCSER2Q9H7U1 834 aa9.04□□□□□ -0.96
SMCO1-201ENST00000397537 IFT57Q9NWB7 429 aa9.04□□□□□ -0.96
SMCO1-201ENST00000397537 URB2Q14146 1524 aaKnown RBP9.04□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L3A6NCW0 530 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L4A6NCW7 530 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ABL1P00519 1130 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 GJA5P36382 358 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ZEB1P37275 1124 aaPredicted RBP9.03□□□□□ -0.96
SMCO1-201ENST00000397537 FANCCQ00597 558 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ECM1Q16610 540 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 LONRF3Q496Y0 759 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L2Q6R6M4 530 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 USP17L1Q7RTZ2 530 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 TMEM87AQ8NBN3 555 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 DCBLD2Q96PD2 775 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ANO2Q9NQ90 1003 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 DCTN4Q9UJW0 460 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ERCC6L2Q5T890 1561 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
SMCO1-201ENST00000397537 OSBPL2Q9H1P3 480 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 EGFL7Q9UHF1 273 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 ADGRG1Q9Y653 693 aa9.03□□□□□ -0.96
SMCO1-201ENST00000397537 CHD1O14646 1710 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 HMGB1P1B2RPK0 211 aaPredicted RBP9.02□□□□□ -0.97
SMCO1-201ENST00000397537 GOLGA2Q08379 1002 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 FOXD4Q12950 439 aaPredicted RBP9.02□□□□□ -0.97
SMCO1-201ENST00000397537 PTK7Q13308 1070 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 FAM9BQ8IZU0 186 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 MAF1Q9H063 256 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 PNMA2Q9UL42 364 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 PRR12Q9ULL5 1215 aa9.02□□□□□ -0.97
SMCO1-201ENST00000397537 HOXA2O43364 376 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 SH3BP5O60239 455 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 ICMTO60725 284 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 ZFYVE27Q5T4F4 411 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 TSHZ1Q6ZSZ6 1077 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 FILIP1Q7Z7B0 1213 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 LRRN4Q8WUT4 740 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 GALR2O43603 387 aaPredicted RBP9.01□□□□□ -0.97
SMCO1-201ENST00000397537 TBX4P57082 545 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 ZSCAN29Q8IWY8 852 aaPredicted RBP9.01□□□□□ -0.97
SMCO1-201ENST00000397537 CNPY4Q8N129 248 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 C1orf216Q8TAB5 229 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 FAM200AQ8TCP9 573 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 FAM161BQ96MY7 647 aa9.01□□□□□ -0.97
SMCO1-201ENST00000397537 P4HBP07237 508 aaKnown RBP9□□□□□ -0.97
SMCO1-201ENST00000397537 CD46P15529 392 aa9□□□□□ -0.97
SMCO1-201ENST00000397537 PRPF38BQ5VTL8 546 aaKnown RBP9□□□□□ -0.97
SMCO1-201ENST00000397537 MAP3K7O43318 606 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 EVI5O60447 810 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 RHBDL3P58872 404 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 C4orf46Q504U0 113 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 NUTM1Q86Y26 1132 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 GLYCTKQ8IVS8 523 aa8.99□□□□□ -0.97
SMCO1-201ENST00000397537 DDX56Q9NY93 547 aaKnown RBP8.99□□□□□ -0.97
SMCO1-201ENST00000397537 C2orf72A6NCS6 295 aa8.98□□□□□ -0.97
SMCO1-201ENST00000397537 DEPDC4Q8N2C3 294 aa8.98□□□□□ -0.97
SMCO1-201ENST00000397537 RNF34Q969K3 372 aa8.98□□□□□ -0.97
SMCO1-201ENST00000397537 RPS6KL1Q9Y6S9 549 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms