RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 OVOS2Q6IE36 1432 aa16.95■□□□□ 0.3
VRK3-202ENST00000377011 SPATA31A5Q5VU36 1347 aa16.95■□□□□ 0.3
VRK3-202ENST00000377011 SPATA31A7Q8IWB4 1347 aa16.95■□□□□ 0.3
VRK3-202ENST00000377011 ANP32CO43423 234 aa16.95■□□□□ 0.3
VRK3-202ENST00000377011 FAM98CQ17RN3 349 aaKnown RBP16.95■□□□□ 0.3
VRK3-202ENST00000377011 ARHGEF25Q86VW2 580 aa16.94■□□□□ 0.3
VRK3-202ENST00000377011 SEPT12Q8IYM1 358 aa16.93■□□□□ 0.3
VRK3-202ENST00000377011 UPF1Q92900 1129 aaKnown RBP eCLIP16.93■□□□□ 0.3
VRK3-202ENST00000377011 COL5A2P05997 1499 aaPredicted RBP16.93■□□□□ 0.3
VRK3-202ENST00000377011 NINLQ9Y2I6 1382 aa16.93■□□□□ 0.3
VRK3-202ENST00000377011 USP35Q9P2H5 1018 aa16.93■□□□□ 0.3
VRK3-202ENST00000377011 ONECUT3O60422 494 aaPredicted RBP16.92■□□□□ 0.3
VRK3-202ENST00000377011 SPATA31A1Q5TZJ5 1347 aa16.91■□□□□ 0.3
VRK3-202ENST00000377011 FYB1O15117 783 aa16.91■□□□□ 0.3
VRK3-202ENST00000377011 GGNBP2Q9H3C7 697 aa16.91■□□□□ 0.3
VRK3-202ENST00000377011 LTN1O94822 1766 aa16.91■□□□□ 0.3
VRK3-202ENST00000377011 AATKQ6ZMQ8 1374 aa16.91■□□□□ 0.3
VRK3-202ENST00000377011 FAM182BQ5T319 152 aa16.9■□□□□ 0.3
VRK3-202ENST00000377011 SLC24A1O60721 1099 aa16.9■□□□□ 0.3
VRK3-202ENST00000377011 THSD7AQ9UPZ6 1657 aa16.9■□□□□ 0.3
VRK3-202ENST00000377011 NSD3Q9BZ95 1437 aa16.89■□□□□ 0.29
VRK3-202ENST00000377011 EVA1CP58658 441 aa16.88■□□□□ 0.29
VRK3-202ENST00000377011 CDCA8Q53HL2 280 aa16.87■□□□□ 0.29
VRK3-202ENST00000377011 KCNH5Q8NCM2 988 aa16.87■□□□□ 0.29
VRK3-202ENST00000377011 KIF20BQ96Q89 1820 aa16.87■□□□□ 0.29
VRK3-202ENST00000377011 A0A0G2JS52 829 aa16.85■□□□□ 0.29
VRK3-202ENST00000377011 KIF7Q2M1P5 1343 aa16.85■□□□□ 0.29
VRK3-202ENST00000377011 RRS1Q15050 365 aaKnown RBP16.84■□□□□ 0.29
VRK3-202ENST00000377011 COG3Q96JB2 828 aa16.84■□□□□ 0.29
VRK3-202ENST00000377011 PANK3Q9H999 370 aa16.84■□□□□ 0.29
VRK3-202ENST00000377011 MAP3K19Q56UN5 1328 aa16.84■□□□□ 0.29
VRK3-202ENST00000377011 CRB1P82279 1406 aa16.83■□□□□ 0.28
VRK3-202ENST00000377011 PEAK1Q9H792 1746 aa16.83■□□□□ 0.28
VRK3-202ENST00000377011 KRT27Q7Z3Y8 459 aa16.82■□□□□ 0.28
VRK3-202ENST00000377011 WDR17Q8IZU2 1322 aa16.82■□□□□ 0.28
VRK3-202ENST00000377011 TCP11L2Q8N4U5 519 aa16.82■□□□□ 0.28
VRK3-202ENST00000377011 RGPD2P0DJD1 1756 aa16.81■□□□□ 0.28
VRK3-202ENST00000377011 TOM1L2Q6ZVM7 507 aa16.81■□□□□ 0.28
VRK3-202ENST00000377011 WNK3Q9BYP7 1800 aa16.8■□□□□ 0.28
VRK3-202ENST00000377011 BARGINQ6ZT62 677 aa16.8■□□□□ 0.28
VRK3-202ENST00000377011 LTV1Q96GA3 475 aaPredicted RBP16.79■□□□□ 0.28
VRK3-202ENST00000377011 ERBB3P21860 1342 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 SRCAPQ6ZRS2 3230 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 CSB-PGBD3P0DP91 1061 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 HOXC9P31274 260 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 ANKRD24Q8TF21 1146 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 WASHC2AQ641Q2 1341 aa16.79■□□□□ 0.28
VRK3-202ENST00000377011 IP6K1Q92551 441 aa16.78■□□□□ 0.28
VRK3-202ENST00000377011 LRRC37A3O60309 1634 aa16.78■□□□□ 0.28
VRK3-202ENST00000377011 PARP4Q9UKK3 1724 aaKnown RBP16.77■□□□□ 0.28
VRK3-202ENST00000377011 ABCC6O95255 1503 aa16.77■□□□□ 0.28
VRK3-202ENST00000377011 EMILIN1Q9Y6C2 1016 aa16.77■□□□□ 0.28
VRK3-202ENST00000377011 DISP2A7MBM2 1401 aa16.76■□□□□ 0.27
VRK3-202ENST00000377011 TNNT2P45379 298 aaPredicted RBP16.76■□□□□ 0.27
VRK3-202ENST00000377011 DEFB132Q7Z7B7 95 aa16.76■□□□□ 0.27
VRK3-202ENST00000377011 CARD10Q9BWT7 1032 aa16.76■□□□□ 0.27
VRK3-202ENST00000377011 CCDC7Q96M83 1385 aa16.75■□□□□ 0.27
VRK3-202ENST00000377011 HSP90AB2PQ58FF8 381 aa16.75■□□□□ 0.27
VRK3-202ENST00000377011 NLRP2Q9NX02 1062 aa16.75■□□□□ 0.27
VRK3-202ENST00000377011 MAP2P11137 1827 aaKnown RBP16.75■□□□□ 0.27
VRK3-202ENST00000377011 ANKRD26Q9UPS8 1709 aa16.74■□□□□ 0.27
VRK3-202ENST00000377011 THRAP3Q9Y2W1 955 aaKnown RBP16.74■□□□□ 0.27
VRK3-202ENST00000377011 NEFLP07196 543 aa16.73■□□□□ 0.27
VRK3-202ENST00000377011 AMPHP49418 695 aa16.73■□□□□ 0.27
VRK3-202ENST00000377011 PTF1AQ7RTS3 328 aa16.73■□□□□ 0.27
VRK3-202ENST00000377011 CGNL1Q0VF96 1302 aa16.73■□□□□ 0.27
VRK3-202ENST00000377011 FAM208AQ9UK61 1670 aaKnown RBP16.73■□□□□ 0.27
VRK3-202ENST00000377011 BLMP54132 1417 aaPredicted RBP16.73■□□□□ 0.27
VRK3-202ENST00000377011 USHBP1Q8N6Y0 703 aa16.72■□□□□ 0.27
VRK3-202ENST00000377011 PER1O15534 1290 aaPredicted RBP16.71■□□□□ 0.27
VRK3-202ENST00000377011 NBPF6Q5VWK0 638 aa16.71■□□□□ 0.27
VRK3-202ENST00000377011 MARCH10Q8NA82 808 aaPredicted RBP16.71■□□□□ 0.27
VRK3-202ENST00000377011 NBPF4Q96M43 638 aa16.71■□□□□ 0.27
VRK3-202ENST00000377011 TNS1Q9HBL0 1735 aaKnown RBP16.71■□□□□ 0.27
VRK3-202ENST00000377011 POLKQ9UBT6 870 aa16.71■□□□□ 0.27
VRK3-202ENST00000377011 AMER1Q5JTC6 1135 aaPredicted RBP16.7■□□□□ 0.26
VRK3-202ENST00000377011 PPM1GO15355 546 aaPredicted RBP16.7■□□□□ 0.26
VRK3-202ENST00000377011 TRIM37O94972 964 aa16.7■□□□□ 0.26
VRK3-202ENST00000377011 PDE3BQ13370 1112 aa16.7■□□□□ 0.26
VRK3-202ENST00000377011 DDB1Q16531 1140 aa16.69■□□□□ 0.26
VRK3-202ENST00000377011 CNGB1Q14028 1251 aaPredicted RBP16.68■□□□□ 0.26
VRK3-202ENST00000377011 RTL1A6NKG5 1358 aa16.68■□□□□ 0.26
VRK3-202ENST00000377011 TSHZ2Q9NRE2 1034 aa16.67■□□□□ 0.26
VRK3-202ENST00000377011 SBF2Q86WG5 1849 aa16.67■□□□□ 0.26
VRK3-202ENST00000377011 MEGF6O75095 1541 aa16.67■□□□□ 0.26
VRK3-202ENST00000377011 FLT4P35916 1363 aa16.67■□□□□ 0.26
VRK3-202ENST00000377011 FKBP8Q14318 412 aa16.67■□□□□ 0.26
VRK3-202ENST00000377011 INSRP06213 1382 aa16.66■□□□□ 0.26
VRK3-202ENST00000377011 SHANK3Q9BYB0 1731 aa16.66■□□□□ 0.26
VRK3-202ENST00000377011 EN1Q05925 392 aaPredicted RBP16.65■□□□□ 0.26
VRK3-202ENST00000377011 KNSTRNQ9Y448 316 aa16.65■□□□□ 0.26
VRK3-202ENST00000377011 RGPD1P0DJD0 1748 aa16.65■□□□□ 0.26
VRK3-202ENST00000377011 TNS2Q63HR2 1409 aa16.65■□□□□ 0.26
VRK3-202ENST00000377011 IL2RBP14784 551 aa16.65■□□□□ 0.26
VRK3-202ENST00000377011 CC2D1BQ5T0F9 858 aaKnown RBP16.65■□□□□ 0.26
VRK3-202ENST00000377011 FAM196AQ6ZSG2 479 aa16.65■□□□□ 0.26
VRK3-202ENST00000377011 EXOC5O00471 708 aa16.63■□□□□ 0.25
VRK3-202ENST00000377011 MORC1Q86VD1 984 aa16.63■□□□□ 0.25
VRK3-202ENST00000377011 CCDC125Q86Z20 511 aa16.63■□□□□ 0.25
VRK3-202ENST00000377011 KCNQ2O43526 872 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms