RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PNNQ9H307 717 aaKnown RBP18.06■□□□□ 0.48
PTPRF-202ENST00000372405 FLT4P35916 1363 aa18.06■□□□□ 0.48
PTPRF-202ENST00000372405 XPCQ01831 940 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-202ENST00000372405 NFAT5O94916 1531 aa18.05■□□□□ 0.48
PTPRF-202ENST00000372405 LTN1O94822 1766 aa18.05■□□□□ 0.48
PTPRF-202ENST00000372405 DLG5Q8TDM6 1919 aa18.04■□□□□ 0.48
PTPRF-202ENST00000372405 ATF3P18847 181 aa18.04■□□□□ 0.48
PTPRF-202ENST00000372405 RIPK4P57078 832 aa18.04■□□□□ 0.48
PTPRF-202ENST00000372405 ZNF335Q9H4Z2 1342 aaPredicted RBP18.03■□□□□ 0.48
PTPRF-202ENST00000372405 AEBP1Q8IUX7 1158 aa18.03■□□□□ 0.48
PTPRF-202ENST00000372405 PLIN1O60240 522 aa18.02■□□□□ 0.47
PTPRF-202ENST00000372405 PPP4R2Q9NY27 417 aa18.02■□□□□ 0.47
PTPRF-202ENST00000372405 ALS2Q96Q42 1657 aa18.01■□□□□ 0.47
PTPRF-202ENST00000372405 MSH6P52701 1360 aa18.01■□□□□ 0.47
PTPRF-202ENST00000372405 KIF24Q5T7B8 1368 aa18.01■□□□□ 0.47
PTPRF-202ENST00000372405 AMPHP49418 695 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 NFE2L2Q16236 605 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 SULT6B1Q6IMI4 303 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 CADPS2Q86UW7 1296 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 SLIT3O75094 1523 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 HOXC9P31274 260 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 KRT28Q7Z3Y7 464 aa18■□□□□ 0.47
PTPRF-202ENST00000372405 PHRF1Q9P1Y6 1649 aaKnown RBP17.99■□□□□ 0.47
PTPRF-202ENST00000372405 ARHGEF10O15013 1369 aa17.99■□□□□ 0.47
PTPRF-202ENST00000372405 DDX17Q92841 729 aaKnown RBP17.99■□□□□ 0.47
PTPRF-202ENST00000372405 NEFMP07197 916 aa17.97■□□□□ 0.47
PTPRF-202ENST00000372405 IL16Q14005 1332 aa17.97■□□□□ 0.47
PTPRF-202ENST00000372405 FANCIQ9NVI1 1328 aa17.97■□□□□ 0.47
PTPRF-202ENST00000372405 RTL1A6NKG5 1358 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 KDRP35968 1356 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 TSR2Q969E8 191 aaKnown RBP17.96■□□□□ 0.47
PTPRF-202ENST00000372405 EYA1Q99502 592 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 MYH16Q9H6N6 1097 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 USP19O94966 1318 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 IGSF1Q8N6C5 1336 aa17.96■□□□□ 0.47
PTPRF-202ENST00000372405 BCAR3O75815 825 aa17.95■□□□□ 0.46
PTPRF-202ENST00000372405 C20orf194Q5TEA3 1177 aa17.95■□□□□ 0.46
PTPRF-202ENST00000372405 B4GALNT3Q6L9W6 998 aa17.95■□□□□ 0.46
PTPRF-202ENST00000372405 EXOC6Q8TAG9 804 aa17.95■□□□□ 0.46
PTPRF-202ENST00000372405 KCNH5Q8NCM2 988 aa17.95■□□□□ 0.46
PTPRF-202ENST00000372405 MED1Q15648 1581 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-202ENST00000372405 PXDNQ92626 1479 aa17.94■□□□□ 0.46
PTPRF-202ENST00000372405 THUMPD2Q9BTF0 503 aaKnown RBP17.94■□□□□ 0.46
PTPRF-202ENST00000372405 GCP02774 474 aa17.93■□□□□ 0.46
PTPRF-202ENST00000372405 IP6K1Q92551 441 aa17.93■□□□□ 0.46
PTPRF-202ENST00000372405 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
PTPRF-202ENST00000372405 RGPD2P0DJD1 1756 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 NPHP3Q7Z494 1330 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 FAM83GA6ND36 823 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 PLEKHG5O94827 1062 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 RARSP54136 660 aaKnown RBP17.91■□□□□ 0.46
PTPRF-202ENST00000372405 BRINP3Q76B58 766 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 ARHGEF25Q86VW2 580 aa17.91■□□□□ 0.46
PTPRF-202ENST00000372405 LTV1Q96GA3 475 aaPredicted RBP17.9■□□□□ 0.46
PTPRF-202ENST00000372405 CRYBG1Q9Y4K1 1723 aa17.9■□□□□ 0.46
PTPRF-202ENST00000372405 EXOSC9Q06265 439 aaKnown RBP17.9■□□□□ 0.46
PTPRF-202ENST00000372405 CRBNQ96SW2 442 aa17.9■□□□□ 0.46
PTPRF-202ENST00000372405 RGPD5Q99666 1765 aa17.89■□□□□ 0.45
PTPRF-202ENST00000372405 TNS3Q68CZ2 1445 aa17.88■□□□□ 0.45
PTPRF-202ENST00000372405 DCTN1Q14203 1278 aa17.88■□□□□ 0.45
PTPRF-202ENST00000372405 ZNF853P0CG23 659 aa17.88■□□□□ 0.45
PTPRF-202ENST00000372405 LMOD3Q0VAK6 560 aa17.88■□□□□ 0.45
PTPRF-202ENST00000372405 SLAIN2Q9P270 581 aa17.88■□□□□ 0.45
PTPRF-202ENST00000372405 ZBTB7CA1YPR0 619 aa17.87■□□□□ 0.45
PTPRF-202ENST00000372405 MTHFSDQ2M296 383 aaKnown RBP17.87■□□□□ 0.45
PTPRF-202ENST00000372405 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.86■□□□□ 0.45
PTPRF-202ENST00000372405 SPATA31A3Q5VYP0 1347 aa17.86■□□□□ 0.45
PTPRF-202ENST00000372405 USHBP1Q8N6Y0 703 aa17.86■□□□□ 0.45
PTPRF-202ENST00000372405 IFT57Q9NWB7 429 aa17.86■□□□□ 0.45
PTPRF-202ENST00000372405 CT47B1P0C2W7 299 aaPredicted RBP17.85■□□□□ 0.45
PTPRF-202ENST00000372405 NBPF6Q5VWK0 638 aa17.85■□□□□ 0.45
PTPRF-202ENST00000372405 NBPF4Q96M43 638 aa17.85■□□□□ 0.45
PTPRF-202ENST00000372405 BCL2L13Q9BXK5 485 aa17.85■□□□□ 0.45
PTPRF-202ENST00000372405 AXIN2Q9Y2T1 843 aa17.85■□□□□ 0.45
PTPRF-202ENST00000372405 LAS1LQ9Y4W2 734 aaKnown RBP17.85■□□□□ 0.45
PTPRF-202ENST00000372405 CALD1Q05682 793 aaKnown RBP17.84■□□□□ 0.45
PTPRF-202ENST00000372405 CCDC136Q96JN2 1154 aa17.84■□□□□ 0.45
PTPRF-202ENST00000372405 COL18A1P39060 1754 aa17.84■□□□□ 0.45
PTPRF-202ENST00000372405 MBIPQ9NS73 344 aa17.84■□□□□ 0.45
PTPRF-202ENST00000372405 CAMTA1Q9Y6Y1 1673 aa17.83■□□□□ 0.45
PTPRF-202ENST00000372405 GNAI1P63096 354 aa17.83■□□□□ 0.44
PTPRF-202ENST00000372405 MCM10Q7L590 875 aa17.83■□□□□ 0.44
PTPRF-202ENST00000372405 CFAP44Q96MT7 982 aa17.83■□□□□ 0.44
PTPRF-202ENST00000372405 NCAPD2Q15021 1401 aa17.83■□□□□ 0.44
PTPRF-202ENST00000372405 ZC3H6P61129 1189 aaKnown RBP17.82■□□□□ 0.44
PTPRF-202ENST00000372405 CABLES1Q8TDN4 633 aa17.82■□□□□ 0.44
PTPRF-202ENST00000372405 LRRC59Q96AG4 307 aaKnown RBP17.82■□□□□ 0.44
PTPRF-202ENST00000372405 SOS2Q07890 1332 aaPredicted RBP17.82■□□□□ 0.44
PTPRF-202ENST00000372405 CRB1P82279 1406 aa17.81■□□□□ 0.44
PTPRF-202ENST00000372405 PELP1Q8IZL8 1130 aaKnown RBP17.81■□□□□ 0.44
PTPRF-202ENST00000372405 NHSL1Q5SYE7 1610 aa17.81■□□□□ 0.44
PTPRF-202ENST00000372405 SSH1Q8WYL5 1049 aa17.8■□□□□ 0.44
PTPRF-202ENST00000372405 TNNQ9UQP3 1299 aa17.8■□□□□ 0.44
PTPRF-202ENST00000372405 LRRC37A3O60309 1634 aa17.8■□□□□ 0.44
PTPRF-202ENST00000372405 ANKRD24Q8TF21 1146 aa17.8■□□□□ 0.44
PTPRF-202ENST00000372405 FRAT1Q92837 279 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-202ENST00000372405 LMO7Q8WWI1 1683 aa17.79■□□□□ 0.44
PTPRF-202ENST00000372405 PDE3AQ14432 1141 aa17.79■□□□□ 0.44
PTPRF-202ENST00000372405 TSPYL6Q8N831 410 aa17.79■□□□□ 0.44
PTPRF-202ENST00000372405 GAS2L2Q8NHY3 880 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms